HEADER HYDROLASE 24-MAR-06 2GGL TITLE THE MUTANT A222C OF AGROBACTERIUM RADIOBACTER N-CARBAMOYL-D-AMINO ACID TITLE 2 AMIDOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CARBAMOYL-D-AMINO ACID AMIDOHYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.1.77; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS N-CARBAMOYL-D-AMINO-ACID AMIDOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.C.WANG,W.C.CHIU,J.Y.YOU REVDAT 6 25-OCT-23 2GGL 1 REMARK REVDAT 5 10-NOV-21 2GGL 1 SEQADV REVDAT 4 13-JUL-11 2GGL 1 VERSN REVDAT 3 24-FEB-09 2GGL 1 VERSN REVDAT 2 13-JUN-06 2GGL 1 JRNL REVDAT 1 11-APR-06 2GGL 0 SPRSDE 11-APR-06 2GGL 2FKU JRNL AUTH W.C.CHIU,J.Y.YOU,J.S.LIU,S.K.HSU,W.H.HSU,C.H.SHIH,J.K.HWANG, JRNL AUTH 2 W.C.WANG JRNL TITL STRUCTURE-STABILITY-ACTIVITY RELATIONSHIP IN COVALENTLY JRNL TITL 2 CROSS-LINKED N-CARBAMOYL D-AMINO ACID AMIDOHYDROLASE AND JRNL TITL 3 N-ACYLAMINO ACID RACEMASE. JRNL REF J.MOL.BIOL. V. 359 741 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16650857 JRNL DOI 10.1016/J.JMB.2006.03.063 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 45394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.53000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : -2.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.335 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9824 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13312 ; 1.381 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1204 ; 6.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 476 ;36.959 ;23.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1596 ;16.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 76 ;19.381 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1412 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7632 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4769 ; 0.237 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6509 ; 0.324 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 895 ; 0.228 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.243 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.338 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1FO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, HEPES BUFFER, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.05050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTAL STRUCTURE OF D-NCAASE A222C MUTANT REVEALS A REMARK 300 TETRAMER WITH 222 SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 172 O HOH D 392 1.75 REMARK 500 N ARG A 3 O HOH A 402 1.77 REMARK 500 SG CYS C 172 O HOH C 404 1.78 REMARK 500 SG CYS B 172 O HOH B 406 1.90 REMARK 500 OE2 GLU A 64 O HOH A 396 2.00 REMARK 500 N ARG D 3 O HOH D 379 2.12 REMARK 500 OE1 GLN A 296 O HOH A 395 2.16 REMARK 500 CD LYS A 117 O HOH A 404 2.16 REMARK 500 OD2 ASP C 209 O HOH C 352 2.17 REMARK 500 NH2 ARG B 17 OE2 GLU B 64 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 46 172.44 -58.84 REMARK 500 PRO A 55 -8.36 -59.75 REMARK 500 LEU A 88 6.80 -66.74 REMARK 500 SER A 118 33.18 -74.22 REMARK 500 LEU A 145 33.71 -99.50 REMARK 500 ASP A 163 -115.41 60.43 REMARK 500 CYS A 172 -113.35 47.92 REMARK 500 LEU A 265 38.72 -93.73 REMARK 500 HIS A 285 -106.74 -123.09 REMARK 500 MET B 5 167.86 178.43 REMARK 500 PRO B 14 150.27 -46.78 REMARK 500 ALA B 86 -80.19 -53.05 REMARK 500 GLU B 87 -42.69 -27.96 REMARK 500 ASP B 163 -111.28 51.68 REMARK 500 CYS B 172 -110.17 53.35 REMARK 500 GLU B 241 44.79 38.38 REMARK 500 HIS B 285 -101.42 -133.97 REMARK 500 PRO C 55 1.72 -58.78 REMARK 500 TYR C 136 136.80 -38.91 REMARK 500 LEU C 145 46.83 -102.01 REMARK 500 ASP C 163 -121.30 50.53 REMARK 500 CYS C 172 -117.27 45.65 REMARK 500 ASP C 174 -37.92 -38.20 REMARK 500 HIS C 285 -107.50 -148.92 REMARK 500 PHE C 287 53.12 -107.65 REMARK 500 PRO D 55 -4.76 -57.54 REMARK 500 TYR D 139 6.54 -63.74 REMARK 500 LEU D 145 40.56 -102.59 REMARK 500 ASP D 163 -127.24 51.94 REMARK 500 CYS D 172 -106.69 37.00 REMARK 500 HIS D 285 -103.06 -134.63 REMARK 500 ASN D 288 92.29 -69.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FO6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF N-CARBAMOYL-D-AMINO-ACID REMARK 900 AMIDOHYDROLASE REMARK 900 RELATED ID: 2GGK RELATED DB: PDB REMARK 900 THE SAME PROTEIN, A302C MUTANT DBREF 2GGL A 1 304 UNP Q44185 DCAS_AGRTU 1 304 DBREF 2GGL B 1 304 UNP Q44185 DCAS_AGRTU 1 304 DBREF 2GGL C 1 304 UNP Q44185 DCAS_AGRTU 1 304 DBREF 2GGL D 1 304 UNP Q44185 DCAS_AGRTU 1 304 SEQADV 2GGL CYS A 222 UNP Q44185 ALA 222 ENGINEERED MUTATION SEQADV 2GGL CYS B 222 UNP Q44185 ALA 222 ENGINEERED MUTATION SEQADV 2GGL CYS C 222 UNP Q44185 ALA 222 ENGINEERED MUTATION SEQADV 2GGL CYS D 222 UNP Q44185 ALA 222 ENGINEERED MUTATION SEQRES 1 A 304 MET THR ARG GLN MET ILE LEU ALA VAL GLY GLN GLN GLY SEQRES 2 A 304 PRO ILE ALA ARG ALA GLU THR ARG GLU GLN VAL VAL GLY SEQRES 3 A 304 ARG LEU LEU ASP MET LEU THR ASN ALA ALA SER ARG GLY SEQRES 4 A 304 VAL ASN PHE ILE VAL PHE PRO GLU LEU ALA LEU THR THR SEQRES 5 A 304 PHE PHE PRO ARG TRP HIS PHE THR ASP GLU ALA GLU LEU SEQRES 6 A 304 ASP SER PHE TYR GLU THR GLU MET PRO GLY PRO VAL VAL SEQRES 7 A 304 ARG PRO LEU PHE GLU THR ALA ALA GLU LEU GLY ILE GLY SEQRES 8 A 304 PHE ASN LEU GLY TYR ALA GLU LEU VAL VAL GLU GLY GLY SEQRES 9 A 304 VAL LYS ARG ARG PHE ASN THR SER ILE LEU VAL ASP LYS SEQRES 10 A 304 SER GLY LYS ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU SEQRES 11 A 304 PRO GLY HIS LYS GLU TYR GLU ALA TYR ARG PRO PHE GLN SEQRES 12 A 304 HIS LEU GLU LYS ARG TYR PHE GLU PRO GLY ASP LEU GLY SEQRES 13 A 304 PHE PRO VAL TYR ASP VAL ASP ALA ALA LYS MET GLY MET SEQRES 14 A 304 PHE ILE CYS ASN ASP ARG ARG TRP PRO GLU THR TRP ARG SEQRES 15 A 304 VAL MET GLY LEU LYS GLY ALA GLU ILE ILE CYS GLY GLY SEQRES 16 A 304 TYR ASN THR PRO THR HIS ASN PRO PRO VAL PRO GLN HIS SEQRES 17 A 304 ASP HIS LEU THR SER PHE HIS HIS LEU LEU SER MET GLN SEQRES 18 A 304 CYS GLY SER TYR GLN ASN GLY ALA TRP SER ALA ALA ALA SEQRES 19 A 304 GLY LYS VAL GLY MET GLU GLU GLY CYS MET LEU LEU GLY SEQRES 20 A 304 HIS SER CYS ILE VAL ALA PRO THR GLY GLU ILE VAL ALA SEQRES 21 A 304 LEU THR THR THR LEU GLU ASP GLU VAL ILE THR ALA ALA SEQRES 22 A 304 LEU ASP LEU ASP ARG CYS ARG GLU LEU ARG GLU HIS ILE SEQRES 23 A 304 PHE ASN PHE LYS ALA HIS ARG GLN PRO GLN HIS TYR GLY SEQRES 24 A 304 LEU ILE ALA GLU PHE SEQRES 1 B 304 MET THR ARG GLN MET ILE LEU ALA VAL GLY GLN GLN GLY SEQRES 2 B 304 PRO ILE ALA ARG ALA GLU THR ARG GLU GLN VAL VAL GLY SEQRES 3 B 304 ARG LEU LEU ASP MET LEU THR ASN ALA ALA SER ARG GLY SEQRES 4 B 304 VAL ASN PHE ILE VAL PHE PRO GLU LEU ALA LEU THR THR SEQRES 5 B 304 PHE PHE PRO ARG TRP HIS PHE THR ASP GLU ALA GLU LEU SEQRES 6 B 304 ASP SER PHE TYR GLU THR GLU MET PRO GLY PRO VAL VAL SEQRES 7 B 304 ARG PRO LEU PHE GLU THR ALA ALA GLU LEU GLY ILE GLY SEQRES 8 B 304 PHE ASN LEU GLY TYR ALA GLU LEU VAL VAL GLU GLY GLY SEQRES 9 B 304 VAL LYS ARG ARG PHE ASN THR SER ILE LEU VAL ASP LYS SEQRES 10 B 304 SER GLY LYS ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU SEQRES 11 B 304 PRO GLY HIS LYS GLU TYR GLU ALA TYR ARG PRO PHE GLN SEQRES 12 B 304 HIS LEU GLU LYS ARG TYR PHE GLU PRO GLY ASP LEU GLY SEQRES 13 B 304 PHE PRO VAL TYR ASP VAL ASP ALA ALA LYS MET GLY MET SEQRES 14 B 304 PHE ILE CYS ASN ASP ARG ARG TRP PRO GLU THR TRP ARG SEQRES 15 B 304 VAL MET GLY LEU LYS GLY ALA GLU ILE ILE CYS GLY GLY SEQRES 16 B 304 TYR ASN THR PRO THR HIS ASN PRO PRO VAL PRO GLN HIS SEQRES 17 B 304 ASP HIS LEU THR SER PHE HIS HIS LEU LEU SER MET GLN SEQRES 18 B 304 CYS GLY SER TYR GLN ASN GLY ALA TRP SER ALA ALA ALA SEQRES 19 B 304 GLY LYS VAL GLY MET GLU GLU GLY CYS MET LEU LEU GLY SEQRES 20 B 304 HIS SER CYS ILE VAL ALA PRO THR GLY GLU ILE VAL ALA SEQRES 21 B 304 LEU THR THR THR LEU GLU ASP GLU VAL ILE THR ALA ALA SEQRES 22 B 304 LEU ASP LEU ASP ARG CYS ARG GLU LEU ARG GLU HIS ILE SEQRES 23 B 304 PHE ASN PHE LYS ALA HIS ARG GLN PRO GLN HIS TYR GLY SEQRES 24 B 304 LEU ILE ALA GLU PHE SEQRES 1 C 304 MET THR ARG GLN MET ILE LEU ALA VAL GLY GLN GLN GLY SEQRES 2 C 304 PRO ILE ALA ARG ALA GLU THR ARG GLU GLN VAL VAL GLY SEQRES 3 C 304 ARG LEU LEU ASP MET LEU THR ASN ALA ALA SER ARG GLY SEQRES 4 C 304 VAL ASN PHE ILE VAL PHE PRO GLU LEU ALA LEU THR THR SEQRES 5 C 304 PHE PHE PRO ARG TRP HIS PHE THR ASP GLU ALA GLU LEU SEQRES 6 C 304 ASP SER PHE TYR GLU THR GLU MET PRO GLY PRO VAL VAL SEQRES 7 C 304 ARG PRO LEU PHE GLU THR ALA ALA GLU LEU GLY ILE GLY SEQRES 8 C 304 PHE ASN LEU GLY TYR ALA GLU LEU VAL VAL GLU GLY GLY SEQRES 9 C 304 VAL LYS ARG ARG PHE ASN THR SER ILE LEU VAL ASP LYS SEQRES 10 C 304 SER GLY LYS ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU SEQRES 11 C 304 PRO GLY HIS LYS GLU TYR GLU ALA TYR ARG PRO PHE GLN SEQRES 12 C 304 HIS LEU GLU LYS ARG TYR PHE GLU PRO GLY ASP LEU GLY SEQRES 13 C 304 PHE PRO VAL TYR ASP VAL ASP ALA ALA LYS MET GLY MET SEQRES 14 C 304 PHE ILE CYS ASN ASP ARG ARG TRP PRO GLU THR TRP ARG SEQRES 15 C 304 VAL MET GLY LEU LYS GLY ALA GLU ILE ILE CYS GLY GLY SEQRES 16 C 304 TYR ASN THR PRO THR HIS ASN PRO PRO VAL PRO GLN HIS SEQRES 17 C 304 ASP HIS LEU THR SER PHE HIS HIS LEU LEU SER MET GLN SEQRES 18 C 304 CYS GLY SER TYR GLN ASN GLY ALA TRP SER ALA ALA ALA SEQRES 19 C 304 GLY LYS VAL GLY MET GLU GLU GLY CYS MET LEU LEU GLY SEQRES 20 C 304 HIS SER CYS ILE VAL ALA PRO THR GLY GLU ILE VAL ALA SEQRES 21 C 304 LEU THR THR THR LEU GLU ASP GLU VAL ILE THR ALA ALA SEQRES 22 C 304 LEU ASP LEU ASP ARG CYS ARG GLU LEU ARG GLU HIS ILE SEQRES 23 C 304 PHE ASN PHE LYS ALA HIS ARG GLN PRO GLN HIS TYR GLY SEQRES 24 C 304 LEU ILE ALA GLU PHE SEQRES 1 D 304 MET THR ARG GLN MET ILE LEU ALA VAL GLY GLN GLN GLY SEQRES 2 D 304 PRO ILE ALA ARG ALA GLU THR ARG GLU GLN VAL VAL GLY SEQRES 3 D 304 ARG LEU LEU ASP MET LEU THR ASN ALA ALA SER ARG GLY SEQRES 4 D 304 VAL ASN PHE ILE VAL PHE PRO GLU LEU ALA LEU THR THR SEQRES 5 D 304 PHE PHE PRO ARG TRP HIS PHE THR ASP GLU ALA GLU LEU SEQRES 6 D 304 ASP SER PHE TYR GLU THR GLU MET PRO GLY PRO VAL VAL SEQRES 7 D 304 ARG PRO LEU PHE GLU THR ALA ALA GLU LEU GLY ILE GLY SEQRES 8 D 304 PHE ASN LEU GLY TYR ALA GLU LEU VAL VAL GLU GLY GLY SEQRES 9 D 304 VAL LYS ARG ARG PHE ASN THR SER ILE LEU VAL ASP LYS SEQRES 10 D 304 SER GLY LYS ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU SEQRES 11 D 304 PRO GLY HIS LYS GLU TYR GLU ALA TYR ARG PRO PHE GLN SEQRES 12 D 304 HIS LEU GLU LYS ARG TYR PHE GLU PRO GLY ASP LEU GLY SEQRES 13 D 304 PHE PRO VAL TYR ASP VAL ASP ALA ALA LYS MET GLY MET SEQRES 14 D 304 PHE ILE CYS ASN ASP ARG ARG TRP PRO GLU THR TRP ARG SEQRES 15 D 304 VAL MET GLY LEU LYS GLY ALA GLU ILE ILE CYS GLY GLY SEQRES 16 D 304 TYR ASN THR PRO THR HIS ASN PRO PRO VAL PRO GLN HIS SEQRES 17 D 304 ASP HIS LEU THR SER PHE HIS HIS LEU LEU SER MET GLN SEQRES 18 D 304 CYS GLY SER TYR GLN ASN GLY ALA TRP SER ALA ALA ALA SEQRES 19 D 304 GLY LYS VAL GLY MET GLU GLU GLY CYS MET LEU LEU GLY SEQRES 20 D 304 HIS SER CYS ILE VAL ALA PRO THR GLY GLU ILE VAL ALA SEQRES 21 D 304 LEU THR THR THR LEU GLU ASP GLU VAL ILE THR ALA ALA SEQRES 22 D 304 LEU ASP LEU ASP ARG CYS ARG GLU LEU ARG GLU HIS ILE SEQRES 23 D 304 PHE ASN PHE LYS ALA HIS ARG GLN PRO GLN HIS TYR GLY SEQRES 24 D 304 LEU ILE ALA GLU PHE FORMUL 5 HOH *402(H2 O) HELIX 1 1 THR A 20 ARG A 38 1 19 HELIX 2 2 PHE A 53 TRP A 57 5 5 HELIX 3 3 ASP A 61 SER A 67 1 7 HELIX 4 4 VAL A 78 LEU A 88 1 11 HELIX 5 5 LEU A 145 PHE A 150 1 6 HELIX 6 6 ASN A 173 ARG A 176 5 4 HELIX 7 7 TRP A 177 LYS A 187 1 11 HELIX 8 8 VAL A 205 HIS A 210 5 6 HELIX 9 9 LEU A 211 GLY A 228 1 18 HELIX 10 10 CYS A 279 GLU A 284 1 6 HELIX 11 11 ASN A 288 ARG A 293 1 6 HELIX 12 12 GLN A 294 GLU A 303 5 10 HELIX 13 13 THR B 20 ASN B 34 1 15 HELIX 14 14 PHE B 53 TRP B 57 5 5 HELIX 15 15 ASP B 61 SER B 67 1 7 HELIX 16 16 VAL B 78 LEU B 88 1 11 HELIX 17 17 LEU B 145 PHE B 150 1 6 HELIX 18 18 ILE B 171 ARG B 176 5 6 HELIX 19 19 TRP B 177 LEU B 186 1 10 HELIX 20 20 VAL B 205 HIS B 210 5 6 HELIX 21 21 LEU B 211 GLY B 228 1 18 HELIX 22 22 CYS B 279 GLU B 284 1 6 HELIX 23 23 ASN B 288 ARG B 293 1 6 HELIX 24 24 GLN B 294 GLU B 303 5 10 HELIX 25 25 THR C 20 ARG C 38 1 19 HELIX 26 26 PHE C 53 TRP C 57 5 5 HELIX 27 27 ASP C 61 SER C 67 1 7 HELIX 28 28 VAL C 78 GLY C 89 1 12 HELIX 29 29 LEU C 145 PHE C 150 1 6 HELIX 30 30 ILE C 171 ARG C 176 5 6 HELIX 31 31 TRP C 177 LYS C 187 1 11 HELIX 32 32 VAL C 205 HIS C 210 5 6 HELIX 33 33 LEU C 211 GLY C 228 1 18 HELIX 34 34 CYS C 279 GLU C 284 1 6 HELIX 35 35 ASN C 288 ARG C 293 1 6 HELIX 36 36 GLN C 294 GLU C 303 5 10 HELIX 37 37 THR D 20 SER D 37 1 18 HELIX 38 38 PHE D 53 TRP D 57 5 5 HELIX 39 39 ASP D 61 PHE D 68 1 8 HELIX 40 40 VAL D 78 GLY D 89 1 12 HELIX 41 41 LEU D 145 PHE D 150 1 6 HELIX 42 42 ILE D 171 ARG D 176 5 6 HELIX 43 43 TRP D 177 LYS D 187 1 11 HELIX 44 44 VAL D 205 HIS D 210 5 6 HELIX 45 45 LEU D 211 GLY D 228 1 18 HELIX 46 46 CYS D 279 GLU D 284 1 6 HELIX 47 47 ASN D 288 ARG D 293 1 6 HELIX 48 48 GLN D 294 HIS D 297 5 4 HELIX 49 49 TYR D 298 GLU D 303 1 6 SHEET 1 A 6 ILE A 121 ARG A 126 0 SHEET 2 A 6 VAL A 105 VAL A 115 -1 N LEU A 114 O GLY A 123 SHEET 3 A 6 GLY A 91 GLU A 102 -1 N VAL A 100 O ARG A 107 SHEET 4 A 6 PHE A 42 VAL A 44 1 N ILE A 43 O GLY A 91 SHEET 5 A 6 GLN A 4 GLN A 11 1 N GLY A 10 O VAL A 44 SHEET 6 A 6 GLU A 268 ASP A 275 -1 O LEU A 274 N MET A 5 SHEET 1 B 6 VAL A 159 VAL A 162 0 SHEET 2 B 6 ALA A 165 ILE A 171 -1 O ALA A 165 N VAL A 162 SHEET 3 B 6 ILE A 191 TYR A 196 1 O ILE A 191 N GLY A 168 SHEET 4 B 6 TRP A 230 GLY A 235 1 O ALA A 234 N GLY A 194 SHEET 5 B 6 CYS A 250 VAL A 252 -1 O VAL A 252 N SER A 231 SHEET 6 B 6 ILE A 258 LEU A 261 -1 O VAL A 259 N ILE A 251 SHEET 1 C 2 GLY A 238 GLU A 240 0 SHEET 2 C 2 CYS A 243 LEU A 245 -1 O LEU A 245 N GLY A 238 SHEET 1 D 6 ILE B 121 ARG B 126 0 SHEET 2 D 6 VAL B 105 VAL B 115 -1 N LEU B 114 O VAL B 122 SHEET 3 D 6 GLY B 91 GLU B 102 -1 N VAL B 100 O ARG B 107 SHEET 4 D 6 PHE B 42 VAL B 44 1 N ILE B 43 O GLY B 91 SHEET 5 D 6 GLN B 4 GLN B 11 1 N ALA B 8 O VAL B 44 SHEET 6 D 6 GLU B 268 ASP B 275 -1 O LEU B 274 N MET B 5 SHEET 1 E 6 VAL B 159 VAL B 162 0 SHEET 2 E 6 ALA B 165 MET B 169 -1 O ALA B 165 N VAL B 162 SHEET 3 E 6 ILE B 191 ASN B 197 1 O CYS B 193 N GLY B 168 SHEET 4 E 6 TRP B 230 LYS B 236 1 O TRP B 230 N ILE B 192 SHEET 5 E 6 CYS B 250 VAL B 252 -1 O VAL B 252 N SER B 231 SHEET 6 E 6 ILE B 258 LEU B 261 -1 O ALA B 260 N ILE B 251 SHEET 1 F 2 GLY B 238 GLU B 240 0 SHEET 2 F 2 CYS B 243 LEU B 245 -1 O CYS B 243 N GLU B 240 SHEET 1 G 6 ILE C 121 ARG C 126 0 SHEET 2 G 6 LYS C 106 VAL C 115 -1 N SER C 112 O TYR C 125 SHEET 3 G 6 GLY C 91 VAL C 101 -1 N VAL C 100 O ARG C 107 SHEET 4 G 6 PHE C 42 VAL C 44 1 N ILE C 43 O GLY C 91 SHEET 5 G 6 GLN C 4 GLN C 11 1 N ALA C 8 O PHE C 42 SHEET 6 G 6 GLU C 268 ASP C 275 -1 O LEU C 274 N MET C 5 SHEET 1 H 6 VAL C 159 VAL C 162 0 SHEET 2 H 6 ALA C 165 MET C 169 -1 O ALA C 165 N VAL C 162 SHEET 3 H 6 ILE C 191 TYR C 196 1 O CYS C 193 N GLY C 168 SHEET 4 H 6 TRP C 230 GLY C 235 1 O TRP C 230 N ILE C 192 SHEET 5 H 6 CYS C 250 VAL C 252 -1 O VAL C 252 N SER C 231 SHEET 6 H 6 ILE C 258 LEU C 261 -1 O VAL C 259 N ILE C 251 SHEET 1 I 2 GLY C 238 GLU C 240 0 SHEET 2 I 2 CYS C 243 LEU C 245 -1 O LEU C 245 N GLY C 238 SHEET 1 J 6 ILE D 121 ARG D 126 0 SHEET 2 J 6 VAL D 105 VAL D 115 -1 N SER D 112 O TYR D 125 SHEET 3 J 6 GLY D 91 GLU D 102 -1 N VAL D 100 O ARG D 107 SHEET 4 J 6 PHE D 42 VAL D 44 1 N ILE D 43 O GLY D 91 SHEET 5 J 6 GLN D 4 GLN D 11 1 N GLY D 10 O VAL D 44 SHEET 6 J 6 GLU D 268 ASP D 275 -1 O LEU D 274 N MET D 5 SHEET 1 K 6 VAL D 159 VAL D 162 0 SHEET 2 K 6 ALA D 165 MET D 169 -1 O MET D 167 N TYR D 160 SHEET 3 K 6 ILE D 191 TYR D 196 1 O ILE D 191 N GLY D 168 SHEET 4 K 6 TRP D 230 GLY D 235 1 O ALA D 234 N GLY D 194 SHEET 5 K 6 CYS D 250 VAL D 252 -1 O VAL D 252 N SER D 231 SHEET 6 K 6 ILE D 258 LEU D 261 -1 O ALA D 260 N ILE D 251 SHEET 1 L 2 GLY D 238 GLU D 240 0 SHEET 2 L 2 CYS D 243 LEU D 245 -1 O LEU D 245 N GLY D 238 CISPEP 1 MET A 73 PRO A 74 0 -5.22 CISPEP 2 MET B 73 PRO B 74 0 -1.62 CISPEP 3 MET C 73 PRO C 74 0 0.94 CISPEP 4 MET D 73 PRO D 74 0 1.88 CRYST1 69.379 68.101 138.191 90.00 96.09 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014414 0.000000 0.001538 0.00000 SCALE2 0.000000 0.014684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007277 0.00000