HEADER CHAPERONE, METAL TRANSPORT 24-MAR-06 2GGP TITLE SOLUTION STRUCTURE OF THE ATX1-CU(I)-CCC2A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL HOMEOSTASIS FACTOR ATX1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMA DOMAIN, RESIDUES 1-73; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROBABLE COPPER-TRANSPORTING ATPASE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: HMA 1 DOMAIN, RESIDUES 2-72; COMPND 10 SYNONYM: CU2+, -ATPASE; COMPND 11 EC: 3.6.3.4; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ATX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: CCC2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS COPPER TRANSPORT, COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL PROTEOMICS KEYWDS 2 IN EUROPE, SPINE, CHAPERONE, METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.BANCI,I.BERTINI,F.CANTINI,I.C.FELLI,L.GONNELLI,N.HADJILIADIS, AUTHOR 2 R.PIERATTELLI,A.ROSATO,P.VOULGARIS,STRUCTURAL PROTEOMICS IN EUROPE AUTHOR 3 (SPINE) REVDAT 3 09-MAR-22 2GGP 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2GGP 1 VERSN REVDAT 1 08-AUG-06 2GGP 0 JRNL AUTH L.BANCI,I.BERTINI,F.CANTINI,I.C.FELLI,L.GONNELLI, JRNL AUTH 2 N.HADJILIADIS,R.PIERATTELLI,A.ROSATO,P.VOULGARIS JRNL TITL THE ATX1-CCC2 COMPLEX IS A METAL-MEDIATED PROTEIN-PROTEIN JRNL TITL 2 INTERACTION. JRNL REF NAT.CHEM.BIOL. V. 2 367 2006 JRNL REFN ISSN 1552-4450 JRNL PMID 16732294 JRNL DOI 10.1038/NCHEMBIO797 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : CASE, D.A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GGP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037095. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 MM KPI REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM ATX1 U-15N,13C, 1MM CCC2A REMARK 210 UNLABELED, 1MM CU(I), 100MM KPI, REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 2D 15N REMARK 210 EDITED NOESY; 2D 13C EDITED REMARK 210 NOESY; 2D 13C FILTERED NOESY; REMARK 210 NOESY FOR INTERMOLECULAR NOES REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG B 2 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 ARG B 2 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 4 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 5 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 11 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 12 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 12 TYR B 46 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 12 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 13 ARG B 2 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 14 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 15 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 16 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 17 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 14.50 86.11 REMARK 500 1 ARG B 2 -151.24 -84.92 REMARK 500 1 GLU B 3 148.09 -172.92 REMARK 500 1 VAL B 8 74.55 -107.98 REMARK 500 1 THR B 12 -61.85 -141.45 REMARK 500 1 LYS B 28 25.53 -71.43 REMARK 500 1 ASN B 40 15.50 51.74 REMARK 500 1 ASN B 48 156.61 178.12 REMARK 500 1 GLU B 49 20.36 104.22 REMARK 500 1 PHE B 64 -164.63 -107.89 REMARK 500 1 ASP B 71 32.98 -87.59 REMARK 500 2 ALA A 2 -26.76 -141.43 REMARK 500 2 ILE A 4 146.37 72.88 REMARK 500 2 SER A 39 77.34 -102.36 REMARK 500 2 GLN A 43 10.20 80.39 REMARK 500 2 THR B 12 144.96 -170.65 REMARK 500 2 CYS B 13 -150.97 53.35 REMARK 500 2 SER B 14 -89.05 -118.05 REMARK 500 2 ASN B 40 18.94 50.64 REMARK 500 2 PHE B 64 -155.82 -109.93 REMARK 500 2 ASP B 71 23.03 -73.82 REMARK 500 3 GLN A 43 27.22 49.93 REMARK 500 3 THR B 12 -37.87 167.02 REMARK 500 3 ALA B 15 -24.14 -141.21 REMARK 500 3 TYR B 46 -144.08 -152.75 REMARK 500 4 ASP A 32 -30.95 -130.74 REMARK 500 4 ILE B 20 -64.56 -95.70 REMARK 500 4 TYR B 46 -151.46 -147.40 REMARK 500 4 PHE B 64 -167.09 -114.96 REMARK 500 4 ILE B 68 78.71 47.36 REMARK 500 4 ARG B 70 140.30 -170.26 REMARK 500 4 ASP B 71 36.31 -80.85 REMARK 500 5 GLN A 43 18.70 56.85 REMARK 500 5 THR B 12 -68.21 71.52 REMARK 500 5 ALA B 15 -44.64 -132.01 REMARK 500 5 ASN B 40 75.15 66.47 REMARK 500 5 ASN B 48 155.11 99.64 REMARK 500 5 GLU B 49 34.33 -71.75 REMARK 500 5 LYS B 56 32.49 -65.95 REMARK 500 5 GLU B 57 -42.83 -151.60 REMARK 500 5 PHE B 64 -163.52 -121.28 REMARK 500 5 ASP B 71 32.52 -67.86 REMARK 500 6 ALA A 2 -11.78 -160.21 REMARK 500 6 GLN A 43 19.78 59.91 REMARK 500 6 ARG B 2 147.81 179.85 REMARK 500 6 THR B 12 -17.47 -157.06 REMARK 500 6 TYR B 46 -144.60 -153.47 REMARK 500 6 LYS B 56 13.99 -69.61 REMARK 500 6 PHE B 64 -154.93 -115.81 REMARK 500 6 ASP B 71 22.03 -69.94 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 65 CYS B 66 1 -148.56 REMARK 500 TYR B 46 ASP B 47 5 147.44 REMARK 500 ASP B 65 CYS B 66 7 -146.79 REMARK 500 ARG B 70 ASP B 71 7 147.04 REMARK 500 GLU B 67 ILE B 68 8 -147.07 REMARK 500 ASN B 18 THR B 19 13 145.12 REMARK 500 ASP B 65 CYS B 66 15 -149.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 68 0.09 SIDE CHAIN REMARK 500 2 ARG B 70 0.09 SIDE CHAIN REMARK 500 11 ARG B 70 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 B 73 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS B 13 SG 106.5 REMARK 620 3 CYS B 16 SG 117.9 106.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 B 73 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: P38636 RELATED DB: TARGETDB REMARK 900 RELATED ID: P38360 RELATED DB: TARGETDB DBREF 2GGP A 1 73 UNP P38636 ATX1_YEAST 1 73 DBREF 2GGP B 2 72 UNP P38995 ATU2_YEAST 2 72 SEQADV 2GGP ALA B 1 UNP P38995 CLONING ARTIFACT SEQRES 1 A 73 MET ALA GLU ILE LYS HIS TYR GLN PHE ASN VAL VAL MET SEQRES 2 A 73 THR CYS SER GLY CYS SER GLY ALA VAL ASN LYS VAL LEU SEQRES 3 A 73 THR LYS LEU GLU PRO ASP VAL SER LYS ILE ASP ILE SER SEQRES 4 A 73 LEU GLU LYS GLN LEU VAL ASP VAL TYR THR THR LEU PRO SEQRES 5 A 73 TYR ASP PHE ILE LEU GLU LYS ILE LYS LYS THR GLY LYS SEQRES 6 A 73 GLU VAL ARG SER GLY LYS GLN LEU SEQRES 1 B 72 ALA ARG GLU VAL ILE LEU ALA VAL HIS GLY MET THR CYS SEQRES 2 B 72 SER ALA CYS THR ASN THR ILE ASN THR GLN LEU ARG ALA SEQRES 3 B 72 LEU LYS GLY VAL THR LYS CYS ASP ILE SER LEU VAL THR SEQRES 4 B 72 ASN GLU CYS GLN VAL THR TYR ASP ASN GLU VAL THR ALA SEQRES 5 B 72 ASP SER ILE LYS GLU ILE ILE GLU ASP CYS GLY PHE ASP SEQRES 6 B 72 CYS GLU ILE LEU ARG ASP SER HET CU1 B 73 1 HETNAM CU1 COPPER (I) ION FORMUL 3 CU1 CU 1+ HELIX 1 1 CYS A 15 LYS A 28 1 14 HELIX 2 2 PRO A 52 GLY A 64 1 13 HELIX 3 3 THR B 17 ARG B 25 1 9 HELIX 4 4 THR B 51 CYS B 62 1 12 SHEET 1 A 4 VAL A 33 SER A 39 0 SHEET 2 A 4 LEU A 44 THR A 49 -1 O LEU A 44 N SER A 39 SHEET 3 A 4 LYS A 5 VAL A 11 -1 N LYS A 5 O THR A 49 SHEET 4 A 4 VAL A 67 GLN A 72 -1 O LYS A 71 N GLN A 8 SHEET 1 B 4 VAL B 30 ILE B 35 0 SHEET 2 B 4 GLU B 41 TYR B 46 -1 O GLN B 43 N ASP B 34 SHEET 3 B 4 ARG B 2 ALA B 7 -1 N VAL B 4 O VAL B 44 SHEET 4 B 4 GLU B 67 ARG B 70 -1 O ARG B 70 N ILE B 5 LINK SG CYS A 15 CU CU1 B 73 1555 1555 2.18 LINK SG CYS B 13 CU CU1 B 73 1555 1555 2.16 LINK SG CYS B 16 CU CU1 B 73 1555 1555 2.20 SITE 1 AC1 4 CYS A 15 CYS B 13 ALA B 15 CYS B 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1