HEADER TRANSFERASE 24-MAR-06 2GGQ TITLE COMPLEX OF HYPOTHETICAL GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE FROM TITLE 2 SULFOLOBUS TOKODAII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 401AA LONG HYPOTHETICAL GLUCOSE-1-PHOSPHATE COMPND 3 THYMIDYLYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 EC: 2.7.7.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII; SOURCE 3 ORGANISM_TAXID: 111955; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.RAJAKANNAN,T.MIZUSHIMA,A.SUZUKI,R.MASUI,S.KURAMITSU,T.YAMANE REVDAT 4 25-OCT-23 2GGQ 1 REMARK REVDAT 3 13-JUL-11 2GGQ 1 VERSN REVDAT 2 24-FEB-09 2GGQ 1 VERSN REVDAT 1 24-MAR-07 2GGQ 0 JRNL AUTH V.RAJAKANNAN,T.YAMANE JRNL TITL COMPLEX OF HYPOTHETICAL GLUCOSE-1-PHOSPHATE JRNL TITL 2 THYMIDYLYLTRANSFERASE FROM SULFOLOBUS TOKODAII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 33712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1771 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2124 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3141 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : 2.00000 REMARK 3 B12 (A**2) : -0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3226 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4362 ; 1.717 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ;14.293 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;37.549 ;25.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;17.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2353 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1552 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2223 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1985 ; 0.987 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3222 ; 1.751 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1241 ; 2.548 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1140 ; 4.207 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2GG0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 3350, 0.1M KI, 50MM DTTP, 20MM REMARK 280 TRIS-HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.37500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.43487 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.83933 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 61.37500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 35.43487 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.83933 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 61.37500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 35.43487 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.83933 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.86975 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 63.67867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 70.86975 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 63.67867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 70.86975 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 63.67867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 654 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 687 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 167 N - CA - C ANGL. DEV. = -25.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 29 -128.33 48.53 REMARK 500 ASP A 91 -27.16 94.06 REMARK 500 GLU A 92 155.08 134.84 REMARK 500 LYS A 106 -38.21 -36.27 REMARK 500 ASN A 126 60.03 -119.30 REMARK 500 PRO A 127 4.53 -65.34 REMARK 500 TYR A 130 153.21 98.74 REMARK 500 ILE A 150 136.15 175.63 REMARK 500 SER A 177 -170.91 154.61 REMARK 500 GLU A 178 0.28 -59.81 REMARK 500 TYR A 280 31.57 70.09 REMARK 500 GLU A 285 134.85 -170.55 REMARK 500 ALA A 318 -162.64 -73.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 128 ASP A 129 128.91 REMARK 500 ASP A 166 ILE A 167 -122.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GGO RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT DTTP DBREF 2GGQ A 1 401 GB 15621447 BAB65442 1 401 SEQRES 1 A 401 MET LYS ALA PHE ILE LEU ALA ALA GLY SER GLY GLU ARG SEQRES 2 A 401 LEU GLU PRO ILE THR HIS THR ARG PRO LYS ALA PHE VAL SEQRES 3 A 401 PRO ILE LEU SER LYS PRO LEU ILE GLU TYR GLN ILE GLU SEQRES 4 A 401 TYR LEU ARG LYS CYS GLY ILE ARG ASP ILE THR VAL ILE SEQRES 5 A 401 VAL SER SER LYS ASN LYS GLU TYR PHE GLU LYS LYS LEU SEQRES 6 A 401 LYS GLU ILE SER ILE VAL THR GLN LYS ASP ASP ILE LYS SEQRES 7 A 401 GLY THR GLY ALA ALA ILE LEU SER ALA LYS PHE ASN ASP SEQRES 8 A 401 GLU ALA LEU ILE ILE TYR GLY ASP LEU PHE PHE SER ASN SEQRES 9 A 401 GLU LYS GLU ILE CYS ASN ILE ILE THR LEU LYS GLU ASN SEQRES 10 A 401 ALA ILE ILE GLY VAL LYS VAL SER ASN PRO LYS ASP TYR SEQRES 11 A 401 GLY VAL LEU VAL LEU ASP ASN GLN ASN ASN LEU SER LYS SEQRES 12 A 401 ILE ILE GLU LYS PRO GLU ILE PRO PRO SER ASN LEU ILE SEQRES 13 A 401 ASN ALA GLY ILE TYR LYS LEU ASN SER ASP ILE PHE THR SEQRES 14 A 401 TYR LEU ASP LYS ILE SER ILE SER GLU ARG GLY GLU LEU SEQRES 15 A 401 GLU LEU THR ASP ALA ILE ASN LEU MET ALA LYS ASP HIS SEQRES 16 A 401 ARG VAL LYS VAL ILE GLU TYR GLU GLY TYR TRP MET ASP SEQRES 17 A 401 ILE GLY LYS PRO TRP ASN ILE ILE ASP VAL ASN LYS TRP SEQRES 18 A 401 ALA LEU ASP ASN LEU VAL PHE SER GLN ASN LEU GLY ASN SEQRES 19 A 401 VAL GLU ASP ASN VAL LYS ILE LYS GLY LYS VAL ILE ILE SEQRES 20 A 401 GLU GLU ASP ALA GLU ILE LYS SER GLY THR TYR ILE GLU SEQRES 21 A 401 GLY PRO VAL TYR ILE GLY LYS GLY SER GLU ILE GLY PRO SEQRES 22 A 401 ASN SER TYR LEU ARG PRO TYR THR ILE LEU VAL GLU LYS SEQRES 23 A 401 ASN LYS ILE GLY ALA SER VAL GLU VAL LYS GLU SER VAL SEQRES 24 A 401 ILE MET GLU GLY SER LYS ILE PRO HIS LEU SER TYR VAL SEQRES 25 A 401 GLY ASP SER VAL ILE ALA GLU ASP VAL ASN PHE GLY ALA SEQRES 26 A 401 GLY THR LEU ILE ALA ASN LEU ARG PHE ASP GLU LYS GLU SEQRES 27 A 401 VAL LYS VAL ASN VAL LYS GLY LYS ARG ILE SER SER GLY SEQRES 28 A 401 ARG ARG LYS LEU GLY ALA PHE ILE GLY GLY HIS VAL ARG SEQRES 29 A 401 THR GLY ILE ASN VAL THR ILE LEU PRO GLY VAL LYS ILE SEQRES 30 A 401 GLY ALA TYR ALA ARG ILE TYR PRO GLY ALA VAL VAL ASN SEQRES 31 A 401 ARG ASP VAL GLY TYR GLY GLU PHE PHE LYS VAL HET IOD A 501 1 HET IOD A 502 1 HET IOD A 503 1 HET TTP A 500 29 HETNAM IOD IODIDE ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 2 IOD 3(I 1-) FORMUL 5 TTP C10 H17 N2 O14 P3 FORMUL 6 HOH *197(H2 O) HELIX 1 1 GLY A 11 GLU A 15 5 5 HELIX 2 2 PRO A 16 THR A 20 5 5 HELIX 3 3 PRO A 22 PHE A 25 5 4 HELIX 4 4 LEU A 33 CYS A 44 1 12 HELIX 5 5 ASN A 57 LEU A 65 1 9 HELIX 6 6 GLY A 79 LEU A 85 1 7 HELIX 7 7 GLU A 105 ILE A 112 1 8 HELIX 8 8 ASP A 166 ILE A 174 1 9 HELIX 9 9 GLU A 183 HIS A 195 1 13 HELIX 10 10 LYS A 211 LEU A 226 1 16 SHEET 1 A 7 SER A 69 THR A 72 0 SHEET 2 A 7 ASP A 48 VAL A 53 1 N VAL A 51 O SER A 69 SHEET 3 A 7 LYS A 2 ALA A 7 1 N ILE A 5 O ILE A 52 SHEET 4 A 7 ALA A 93 TYR A 97 1 O ILE A 96 N LEU A 6 SHEET 5 A 7 LEU A 155 LEU A 163 -1 O TYR A 161 N ILE A 95 SHEET 6 A 7 ASN A 117 LYS A 123 -1 N ALA A 118 O LYS A 162 SHEET 7 A 7 VAL A 197 GLU A 201 1 O ILE A 200 N ILE A 119 SHEET 1 B 2 PRO A 27 ILE A 28 0 SHEET 2 B 2 LYS A 31 PRO A 32 -1 O LYS A 31 N ILE A 28 SHEET 1 C 2 LEU A 100 PHE A 102 0 SHEET 2 C 2 TRP A 206 ASP A 208 -1 O MET A 207 N PHE A 101 SHEET 1 D 2 GLY A 131 LEU A 135 0 SHEET 2 D 2 LEU A 141 GLU A 146 -1 O LYS A 143 N VAL A 134 SHEET 1 E 8 GLN A 230 ASN A 231 0 SHEET 2 E 8 VAL A 245 ILE A 247 1 O ILE A 247 N GLN A 230 SHEET 3 E 8 VAL A 263 ILE A 265 1 O ILE A 265 N ILE A 246 SHEET 4 E 8 THR A 281 LEU A 283 1 O LEU A 283 N TYR A 264 SHEET 5 E 8 SER A 298 ILE A 300 1 O ILE A 300 N ILE A 282 SHEET 6 E 8 VAL A 316 ILE A 317 1 O ILE A 317 N VAL A 299 SHEET 7 E 8 PHE A 358 ILE A 359 1 O ILE A 359 N VAL A 316 SHEET 8 E 8 LYS A 376 ILE A 377 1 O ILE A 377 N PHE A 358 SHEET 1 F 7 ASN A 234 VAL A 235 0 SHEET 2 F 7 GLU A 252 ILE A 253 1 O ILE A 253 N ASN A 234 SHEET 3 F 7 GLU A 270 ILE A 271 1 O ILE A 271 N GLU A 252 SHEET 4 F 7 LYS A 288 LYS A 296 1 O ILE A 289 N GLU A 270 SHEET 5 F 7 TYR A 276 LEU A 277 1 N TYR A 276 O VAL A 293 SHEET 6 F 7 TYR A 258 GLU A 260 1 N GLU A 260 O LEU A 277 SHEET 7 F 7 LYS A 240 LYS A 242 1 N LYS A 240 O ILE A 259 SHEET 1 G 5 ASN A 234 VAL A 235 0 SHEET 2 G 5 GLU A 252 ILE A 253 1 O ILE A 253 N ASN A 234 SHEET 3 G 5 GLU A 270 ILE A 271 1 O ILE A 271 N GLU A 252 SHEET 4 G 5 LYS A 288 LYS A 296 1 O ILE A 289 N GLU A 270 SHEET 5 G 5 LYS A 305 GLY A 313 1 O ILE A 306 N LYS A 288 SHEET 1 H 4 ASN A 322 PHE A 323 0 SHEET 2 H 4 ARG A 364 THR A 365 1 O THR A 365 N ASN A 322 SHEET 3 H 4 ARG A 382 ILE A 383 1 O ILE A 383 N ARG A 364 SHEET 4 H 4 PHE A 398 PHE A 399 1 O PHE A 399 N ARG A 382 SHEET 1 I 3 LEU A 328 ILE A 329 0 SHEET 2 I 3 THR A 370 ILE A 371 1 O ILE A 371 N LEU A 328 SHEET 3 I 3 VAL A 388 VAL A 389 1 O VAL A 389 N THR A 370 SHEET 1 J 2 LYS A 340 VAL A 343 0 SHEET 2 J 2 LYS A 346 SER A 349 -1 O LYS A 346 N VAL A 343 SSBOND 1 CYS A 44 CYS A 109 1555 1555 1.95 CISPEP 1 GLU A 15 PRO A 16 0 6.18 CISPEP 2 ILE A 176 SER A 177 0 -11.50 CISPEP 3 GLY A 261 PRO A 262 0 1.98 CISPEP 4 GLY A 272 PRO A 273 0 0.66 SITE 1 AC1 1 TYR A 311 SITE 1 AC2 1 PHE A 334 SITE 1 AC3 15 LEU A 6 ALA A 8 GLY A 9 SER A 10 SITE 2 AC3 15 GLY A 11 GLU A 12 ARG A 13 LYS A 23 SITE 3 AC3 15 GLN A 73 GLY A 79 ALA A 83 ARG A 179 SITE 4 AC3 15 GLU A 181 LYS A 344 HOH A 622 CRYST1 122.750 122.750 95.518 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008147 0.004703 0.000000 0.00000 SCALE2 0.000000 0.009407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010469 0.00000