data_2GGV # _entry.id 2GGV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GGV pdb_00002ggv 10.2210/pdb2ggv/pdb RCSB RCSB037101 ? ? WWPDB D_1000037101 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-27 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 2GGV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-03-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aleshin, A.E.' 1 'Shiryaev, S.A.' 2 'Strongin, A.Y.' 3 'Liddington, R.C.' 4 # _citation.id primary _citation.title 'Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 16 _citation.page_first 795 _citation.page_last 806 _citation.year 2007 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17400917 _citation.pdbx_database_id_DOI 10.1110/ps.072753207 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aleshin, A.E.' 1 ? primary 'Shiryaev, S.A.' 2 ? primary 'Strongin, A.Y.' 3 ? primary 'Liddington, R.C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'non-structural protein 2B' 5981.351 1 ? ? 'NS2B cofactor' ? 2 polymer man 'non-structural protein 3' 20035.590 1 ? H51A 'NS3 protease domain' ? 3 water nat water 18.015 90 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 NS2B 2 NS3 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MSTDMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMNDPGAGGGGSGGGRR MSTDMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMNDPGAGGGGSGGGRR A ? 2 'polypeptide(L)' no no ;GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWATTKGAALMSGEGRLDPYWGSVKEDRLCYGG PWQLQHKWNGQDEVQMIVVEPGRNVKNVQTKPGVFKTPEGEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSY ISAIVQGERMDEPIPAGKGHHHHHH ; ;GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWATTKGAALMSGEGRLDPYWGSVKEDRLCYGG PWQLQHKWNGQDEVQMIVVEPGRNVKNVQTKPGVFKTPEGEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSY ISAIVQGERMDEPIPAGKGHHHHHH ; B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 THR n 1 4 ASP n 1 5 MET n 1 6 TRP n 1 7 ILE n 1 8 GLU n 1 9 ARG n 1 10 THR n 1 11 ALA n 1 12 ASP n 1 13 ILE n 1 14 SER n 1 15 TRP n 1 16 GLU n 1 17 SER n 1 18 ASP n 1 19 ALA n 1 20 GLU n 1 21 ILE n 1 22 THR n 1 23 GLY n 1 24 SER n 1 25 SER n 1 26 GLU n 1 27 ARG n 1 28 VAL n 1 29 ASP n 1 30 VAL n 1 31 ARG n 1 32 LEU n 1 33 ASP n 1 34 ASP n 1 35 ASP n 1 36 GLY n 1 37 ASN n 1 38 PHE n 1 39 GLN n 1 40 LEU n 1 41 MET n 1 42 ASN n 1 43 ASP n 1 44 PRO n 1 45 GLY n 1 46 ALA n 1 47 GLY n 1 48 GLY n 1 49 GLY n 1 50 GLY n 1 51 SER n 1 52 GLY n 1 53 GLY n 1 54 GLY n 1 55 ARG n 1 56 ARG n 2 1 GLY n 2 2 VAL n 2 3 LEU n 2 4 TRP n 2 5 ASP n 2 6 THR n 2 7 PRO n 2 8 SER n 2 9 PRO n 2 10 LYS n 2 11 GLU n 2 12 TYR n 2 13 LYS n 2 14 LYS n 2 15 GLY n 2 16 ASP n 2 17 THR n 2 18 THR n 2 19 THR n 2 20 GLY n 2 21 VAL n 2 22 TYR n 2 23 ARG n 2 24 ILE n 2 25 MET n 2 26 THR n 2 27 ARG n 2 28 GLY n 2 29 LEU n 2 30 LEU n 2 31 GLY n 2 32 SER n 2 33 TYR n 2 34 GLN n 2 35 ALA n 2 36 GLY n 2 37 ALA n 2 38 GLY n 2 39 VAL n 2 40 MET n 2 41 VAL n 2 42 GLU n 2 43 GLY n 2 44 VAL n 2 45 PHE n 2 46 HIS n 2 47 THR n 2 48 LEU n 2 49 TRP n 2 50 ALA n 2 51 THR n 2 52 THR n 2 53 LYS n 2 54 GLY n 2 55 ALA n 2 56 ALA n 2 57 LEU n 2 58 MET n 2 59 SER n 2 60 GLY n 2 61 GLU n 2 62 GLY n 2 63 ARG n 2 64 LEU n 2 65 ASP n 2 66 PRO n 2 67 TYR n 2 68 TRP n 2 69 GLY n 2 70 SER n 2 71 VAL n 2 72 LYS n 2 73 GLU n 2 74 ASP n 2 75 ARG n 2 76 LEU n 2 77 CYS n 2 78 TYR n 2 79 GLY n 2 80 GLY n 2 81 PRO n 2 82 TRP n 2 83 GLN n 2 84 LEU n 2 85 GLN n 2 86 HIS n 2 87 LYS n 2 88 TRP n 2 89 ASN n 2 90 GLY n 2 91 GLN n 2 92 ASP n 2 93 GLU n 2 94 VAL n 2 95 GLN n 2 96 MET n 2 97 ILE n 2 98 VAL n 2 99 VAL n 2 100 GLU n 2 101 PRO n 2 102 GLY n 2 103 ARG n 2 104 ASN n 2 105 VAL n 2 106 LYS n 2 107 ASN n 2 108 VAL n 2 109 GLN n 2 110 THR n 2 111 LYS n 2 112 PRO n 2 113 GLY n 2 114 VAL n 2 115 PHE n 2 116 LYS n 2 117 THR n 2 118 PRO n 2 119 GLU n 2 120 GLY n 2 121 GLU n 2 122 ILE n 2 123 GLY n 2 124 ALA n 2 125 VAL n 2 126 THR n 2 127 LEU n 2 128 ASP n 2 129 PHE n 2 130 PRO n 2 131 THR n 2 132 GLY n 2 133 THR n 2 134 SER n 2 135 GLY n 2 136 SER n 2 137 PRO n 2 138 ILE n 2 139 VAL n 2 140 ASP n 2 141 LYS n 2 142 ASN n 2 143 GLY n 2 144 ASP n 2 145 VAL n 2 146 ILE n 2 147 GLY n 2 148 LEU n 2 149 TYR n 2 150 GLY n 2 151 ASN n 2 152 GLY n 2 153 VAL n 2 154 ILE n 2 155 MET n 2 156 PRO n 2 157 ASN n 2 158 GLY n 2 159 SER n 2 160 TYR n 2 161 ILE n 2 162 SER n 2 163 ALA n 2 164 ILE n 2 165 VAL n 2 166 GLN n 2 167 GLY n 2 168 GLU n 2 169 ARG n 2 170 MET n 2 171 ASP n 2 172 GLU n 2 173 PRO n 2 174 ILE n 2 175 PRO n 2 176 ALA n 2 177 GLY n 2 178 LYS n 2 179 GLY n 2 180 HIS n 2 181 HIS n 2 182 HIS n 2 183 HIS n 2 184 HIS n 2 185 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Flavivirus ? ? ? ? ? ? ? 'West Nile virus' 11082 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? Pet101/D-TOPO ? ? 2 1 sample ? ? ? ? Flavivirus ? ? ? ? ? ? ? 'West Nile virus' 11082 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? Pet101/D-TOPO ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 48 ? ? ? A . n A 1 2 SER 2 49 ? ? ? A . n A 1 3 THR 3 50 50 THR THR A . n A 1 4 ASP 4 51 51 ASP ASP A . n A 1 5 MET 5 52 52 MET MET A . n A 1 6 TRP 6 53 53 TRP TRP A . n A 1 7 ILE 7 54 54 ILE ILE A . n A 1 8 GLU 8 55 55 GLU GLU A . n A 1 9 ARG 9 56 56 ARG ARG A . n A 1 10 THR 10 57 57 THR THR A . n A 1 11 ALA 11 58 58 ALA ALA A . n A 1 12 ASP 12 59 59 ASP ASP A . n A 1 13 ILE 13 60 60 ILE ILE A . n A 1 14 SER 14 61 61 SER SER A . n A 1 15 TRP 15 62 62 TRP TRP A . n A 1 16 GLU 16 63 63 GLU GLU A . n A 1 17 SER 17 64 64 SER SER A . n A 1 18 ASP 18 65 65 ASP ASP A . n A 1 19 ALA 19 66 66 ALA ALA A . n A 1 20 GLU 20 67 67 GLU GLU A . n A 1 21 ILE 21 68 68 ILE ILE A . n A 1 22 THR 22 69 69 THR THR A . n A 1 23 GLY 23 70 70 GLY GLY A . n A 1 24 SER 24 71 71 SER SER A . n A 1 25 SER 25 72 72 SER SER A . n A 1 26 GLU 26 73 73 GLU GLU A . n A 1 27 ARG 27 74 74 ARG ARG A . n A 1 28 VAL 28 75 75 VAL VAL A . n A 1 29 ASP 29 76 76 ASP ASP A . n A 1 30 VAL 30 77 77 VAL VAL A . n A 1 31 ARG 31 78 78 ARG ARG A . n A 1 32 LEU 32 79 79 LEU LEU A . n A 1 33 ASP 33 80 80 ASP ASP A . n A 1 34 ASP 34 81 81 ASP ASP A . n A 1 35 ASP 35 82 82 ASP ASP A . n A 1 36 GLY 36 83 83 GLY GLY A . n A 1 37 ASN 37 84 84 ASN ASN A . n A 1 38 PHE 38 85 85 PHE PHE A . n A 1 39 GLN 39 86 86 GLN GLN A . n A 1 40 LEU 40 87 87 LEU LEU A . n A 1 41 MET 41 88 88 MET MET A . n A 1 42 ASN 42 89 89 ASN ASN A . n A 1 43 ASP 43 90 90 ASP ASP A . n A 1 44 PRO 44 91 91 PRO PRO A . n A 1 45 GLY 45 92 92 GLY GLY A . n A 1 46 ALA 46 93 93 ALA ALA A . n A 1 47 GLY 47 94 ? ? ? A . n A 1 48 GLY 48 95 ? ? ? A . n A 1 49 GLY 49 96 ? ? ? A . n A 1 50 GLY 50 97 ? ? ? A . n A 1 51 SER 51 98 ? ? ? A . n A 1 52 GLY 52 99 ? ? ? A . n A 1 53 GLY 53 100 ? ? ? A . n A 1 54 GLY 54 101 ? ? ? A . n A 1 55 ARG 55 102 ? ? ? A . n A 1 56 ARG 56 103 ? ? ? A . n B 2 1 GLY 1 2 ? ? ? B . n B 2 2 VAL 2 3 ? ? ? B . n B 2 3 LEU 3 4 ? ? ? B . n B 2 4 TRP 4 5 ? ? ? B . n B 2 5 ASP 5 6 ? ? ? B . n B 2 6 THR 6 7 ? ? ? B . n B 2 7 PRO 7 8 ? ? ? B . n B 2 8 SER 8 9 ? ? ? B . n B 2 9 PRO 9 10 10 PRO PRO B . n B 2 10 LYS 10 11 11 LYS LYS B . n B 2 11 GLU 11 12 12 GLU GLU B . n B 2 12 TYR 12 13 13 TYR TYR B . n B 2 13 LYS 13 14 14 LYS LYS B . n B 2 14 LYS 14 15 15 LYS LYS B . n B 2 15 GLY 15 16 16 GLY GLY B . n B 2 16 ASP 16 17 17 ASP ASP B . n B 2 17 THR 17 18 18 THR THR B . n B 2 18 THR 18 19 19 THR THR B . n B 2 19 THR 19 20 20 THR THR B . n B 2 20 GLY 20 21 21 GLY GLY B . n B 2 21 VAL 21 22 22 VAL VAL B . n B 2 22 TYR 22 23 23 TYR TYR B . n B 2 23 ARG 23 24 24 ARG ARG B . n B 2 24 ILE 24 25 25 ILE ILE B . n B 2 25 MET 25 26 26 MET MET B . n B 2 26 THR 26 27 27 THR THR B . n B 2 27 ARG 27 28 28 ARG ARG B . n B 2 28 GLY 28 29 29 GLY GLY B . n B 2 29 LEU 29 30 30 LEU LEU B . n B 2 30 LEU 30 31 31 LEU LEU B . n B 2 31 GLY 31 32 32 GLY GLY B . n B 2 32 SER 32 33 33 SER SER B . n B 2 33 TYR 33 34 34 TYR TYR B . n B 2 34 GLN 34 35 35 GLN GLN B . n B 2 35 ALA 35 36 36 ALA ALA B . n B 2 36 GLY 36 37 37 GLY GLY B . n B 2 37 ALA 37 38 38 ALA ALA B . n B 2 38 GLY 38 39 39 GLY GLY B . n B 2 39 VAL 39 40 40 VAL VAL B . n B 2 40 MET 40 41 41 MET MET B . n B 2 41 VAL 41 42 42 VAL VAL B . n B 2 42 GLU 42 43 43 GLU GLU B . n B 2 43 GLY 43 44 44 GLY GLY B . n B 2 44 VAL 44 45 45 VAL VAL B . n B 2 45 PHE 45 46 46 PHE PHE B . n B 2 46 HIS 46 47 47 HIS HIS B . n B 2 47 THR 47 48 48 THR THR B . n B 2 48 LEU 48 49 49 LEU LEU B . n B 2 49 TRP 49 50 50 TRP TRP B . n B 2 50 ALA 50 51 51 ALA ALA B . n B 2 51 THR 51 52 52 THR THR B . n B 2 52 THR 52 53 53 THR THR B . n B 2 53 LYS 53 54 54 LYS LYS B . n B 2 54 GLY 54 55 55 GLY GLY B . n B 2 55 ALA 55 56 56 ALA ALA B . n B 2 56 ALA 56 57 57 ALA ALA B . n B 2 57 LEU 57 58 58 LEU LEU B . n B 2 58 MET 58 59 59 MET MET B . n B 2 59 SER 59 60 60 SER SER B . n B 2 60 GLY 60 61 61 GLY GLY B . n B 2 61 GLU 61 62 62 GLU GLU B . n B 2 62 GLY 62 63 63 GLY GLY B . n B 2 63 ARG 63 64 64 ARG ARG B . n B 2 64 LEU 64 65 65 LEU LEU B . n B 2 65 ASP 65 66 66 ASP ASP B . n B 2 66 PRO 66 67 67 PRO PRO B . n B 2 67 TYR 67 68 68 TYR TYR B . n B 2 68 TRP 68 69 69 TRP TRP B . n B 2 69 GLY 69 70 70 GLY GLY B . n B 2 70 SER 70 71 71 SER SER B . n B 2 71 VAL 71 72 72 VAL VAL B . n B 2 72 LYS 72 73 73 LYS LYS B . n B 2 73 GLU 73 74 74 GLU GLU B . n B 2 74 ASP 74 75 75 ASP ASP B . n B 2 75 ARG 75 76 76 ARG ARG B . n B 2 76 LEU 76 77 77 LEU LEU B . n B 2 77 CYS 77 78 78 CYS CYS B . n B 2 78 TYR 78 79 79 TYR TYR B . n B 2 79 GLY 79 80 80 GLY GLY B . n B 2 80 GLY 80 81 81 GLY GLY B . n B 2 81 PRO 81 82 82 PRO PRO B . n B 2 82 TRP 82 83 83 TRP TRP B . n B 2 83 GLN 83 84 84 GLN GLN B . n B 2 84 LEU 84 85 85 LEU LEU B . n B 2 85 GLN 85 86 86 GLN GLN B . n B 2 86 HIS 86 87 87 HIS HIS B . n B 2 87 LYS 87 88 88 LYS LYS B . n B 2 88 TRP 88 89 89 TRP TRP B . n B 2 89 ASN 89 90 90 ASN ASN B . n B 2 90 GLY 90 91 91 GLY GLY B . n B 2 91 GLN 91 92 92 GLN GLN B . n B 2 92 ASP 92 93 93 ASP ASP B . n B 2 93 GLU 93 94 94 GLU GLU B . n B 2 94 VAL 94 95 95 VAL VAL B . n B 2 95 GLN 95 96 96 GLN GLN B . n B 2 96 MET 96 97 97 MET MET B . n B 2 97 ILE 97 98 98 ILE ILE B . n B 2 98 VAL 98 99 99 VAL VAL B . n B 2 99 VAL 99 100 100 VAL VAL B . n B 2 100 GLU 100 101 101 GLU GLU B . n B 2 101 PRO 101 102 102 PRO PRO B . n B 2 102 GLY 102 103 103 GLY GLY B . n B 2 103 ARG 103 104 104 ARG ARG B . n B 2 104 ASN 104 105 105 ASN ASN B . n B 2 105 VAL 105 106 106 VAL VAL B . n B 2 106 LYS 106 107 107 LYS LYS B . n B 2 107 ASN 107 108 108 ASN ASN B . n B 2 108 VAL 108 109 109 VAL VAL B . n B 2 109 GLN 109 110 110 GLN GLN B . n B 2 110 THR 110 111 111 THR THR B . n B 2 111 LYS 111 112 112 LYS LYS B . n B 2 112 PRO 112 113 113 PRO PRO B . n B 2 113 GLY 113 114 114 GLY GLY B . n B 2 114 VAL 114 115 115 VAL VAL B . n B 2 115 PHE 115 116 116 PHE PHE B . n B 2 116 LYS 116 117 117 LYS LYS B . n B 2 117 THR 117 118 118 THR THR B . n B 2 118 PRO 118 119 119 PRO PRO B . n B 2 119 GLU 119 120 120 GLU GLU B . n B 2 120 GLY 120 121 121 GLY GLY B . n B 2 121 GLU 121 122 122 GLU GLU B . n B 2 122 ILE 122 123 123 ILE ILE B . n B 2 123 GLY 123 124 124 GLY GLY B . n B 2 124 ALA 124 125 125 ALA ALA B . n B 2 125 VAL 125 126 126 VAL VAL B . n B 2 126 THR 126 127 127 THR THR B . n B 2 127 LEU 127 128 128 LEU LEU B . n B 2 128 ASP 128 129 129 ASP ASP B . n B 2 129 PHE 129 130 130 PHE PHE B . n B 2 130 PRO 130 131 131 PRO PRO B . n B 2 131 THR 131 132 132 THR THR B . n B 2 132 GLY 132 133 133 GLY GLY B . n B 2 133 THR 133 134 134 THR THR B . n B 2 134 SER 134 135 135 SER SER B . n B 2 135 GLY 135 136 136 GLY GLY B . n B 2 136 SER 136 137 137 SER SER B . n B 2 137 PRO 137 138 138 PRO PRO B . n B 2 138 ILE 138 139 139 ILE ILE B . n B 2 139 VAL 139 140 140 VAL VAL B . n B 2 140 ASP 140 141 141 ASP ASP B . n B 2 141 LYS 141 142 142 LYS LYS B . n B 2 142 ASN 142 143 143 ASN ASN B . n B 2 143 GLY 143 144 144 GLY GLY B . n B 2 144 ASP 144 145 145 ASP ASP B . n B 2 145 VAL 145 146 146 VAL VAL B . n B 2 146 ILE 146 147 147 ILE ILE B . n B 2 147 GLY 147 148 148 GLY GLY B . n B 2 148 LEU 148 149 149 LEU LEU B . n B 2 149 TYR 149 150 150 TYR TYR B . n B 2 150 GLY 150 151 151 GLY GLY B . n B 2 151 ASN 151 152 152 ASN ASN B . n B 2 152 GLY 152 153 153 GLY GLY B . n B 2 153 VAL 153 154 154 VAL VAL B . n B 2 154 ILE 154 155 155 ILE ILE B . n B 2 155 MET 155 156 156 MET MET B . n B 2 156 PRO 156 157 157 PRO PRO B . n B 2 157 ASN 157 158 158 ASN ASN B . n B 2 158 GLY 158 159 159 GLY GLY B . n B 2 159 SER 159 160 160 SER SER B . n B 2 160 TYR 160 161 161 TYR TYR B . n B 2 161 ILE 161 162 162 ILE ILE B . n B 2 162 SER 162 163 163 SER SER B . n B 2 163 ALA 163 164 164 ALA ALA B . n B 2 164 ILE 164 165 165 ILE ILE B . n B 2 165 VAL 165 166 166 VAL VAL B . n B 2 166 GLN 166 167 167 GLN GLN B . n B 2 167 GLY 167 168 168 GLY GLY B . n B 2 168 GLU 168 169 169 GLU GLU B . n B 2 169 ARG 169 170 170 ARG ARG B . n B 2 170 MET 170 171 171 MET MET B . n B 2 171 ASP 171 172 172 ASP ASP B . n B 2 172 GLU 172 173 173 GLU GLU B . n B 2 173 PRO 173 174 174 PRO PRO B . n B 2 174 ILE 174 175 175 ILE ILE B . n B 2 175 PRO 175 176 176 PRO PRO B . n B 2 176 ALA 176 177 177 ALA ALA B . n B 2 177 GLY 177 178 178 GLY GLY B . n B 2 178 LYS 178 179 ? ? ? B . n B 2 179 GLY 179 180 ? ? ? B . n B 2 180 HIS 180 181 ? ? ? B . n B 2 181 HIS 181 182 ? ? ? B . n B 2 182 HIS 182 183 ? ? ? B . n B 2 183 HIS 183 184 ? ? ? B . n B 2 184 HIS 184 185 ? ? ? B . n B 2 185 HIS 185 186 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 104 2 HOH HOH A . C 3 HOH 2 105 4 HOH HOH A . C 3 HOH 3 106 8 HOH HOH A . C 3 HOH 4 107 23 HOH HOH A . C 3 HOH 5 108 25 HOH HOH A . C 3 HOH 6 109 27 HOH HOH A . C 3 HOH 7 110 30 HOH HOH A . C 3 HOH 8 111 37 HOH HOH A . C 3 HOH 9 112 43 HOH HOH A . C 3 HOH 10 113 48 HOH HOH A . C 3 HOH 11 114 49 HOH HOH A . C 3 HOH 12 115 58 HOH HOH A . C 3 HOH 13 116 59 HOH HOH A . C 3 HOH 14 117 68 HOH HOH A . C 3 HOH 15 118 79 HOH HOH A . C 3 HOH 16 119 81 HOH HOH A . C 3 HOH 17 120 86 HOH HOH A . C 3 HOH 18 121 87 HOH HOH A . C 3 HOH 19 122 89 HOH HOH A . D 3 HOH 1 187 1 HOH HOH B . D 3 HOH 2 188 3 HOH HOH B . D 3 HOH 3 189 5 HOH HOH B . D 3 HOH 4 190 6 HOH HOH B . D 3 HOH 5 191 7 HOH HOH B . D 3 HOH 6 192 9 HOH HOH B . D 3 HOH 7 193 10 HOH HOH B . D 3 HOH 8 194 11 HOH HOH B . D 3 HOH 9 195 12 HOH HOH B . D 3 HOH 10 196 13 HOH HOH B . D 3 HOH 11 197 14 HOH HOH B . D 3 HOH 12 198 15 HOH HOH B . D 3 HOH 13 199 16 HOH HOH B . D 3 HOH 14 200 17 HOH HOH B . D 3 HOH 15 201 18 HOH HOH B . D 3 HOH 16 202 19 HOH HOH B . D 3 HOH 17 203 20 HOH HOH B . D 3 HOH 18 204 21 HOH HOH B . D 3 HOH 19 205 22 HOH HOH B . D 3 HOH 20 206 24 HOH HOH B . D 3 HOH 21 207 26 HOH HOH B . D 3 HOH 22 208 28 HOH HOH B . D 3 HOH 23 209 29 HOH HOH B . D 3 HOH 24 210 31 HOH HOH B . D 3 HOH 25 211 32 HOH HOH B . D 3 HOH 26 212 33 HOH HOH B . D 3 HOH 27 213 34 HOH HOH B . D 3 HOH 28 214 35 HOH HOH B . D 3 HOH 29 215 36 HOH HOH B . D 3 HOH 30 216 38 HOH HOH B . D 3 HOH 31 217 39 HOH HOH B . D 3 HOH 32 218 40 HOH HOH B . D 3 HOH 33 219 41 HOH HOH B . D 3 HOH 34 220 42 HOH HOH B . D 3 HOH 35 221 44 HOH HOH B . D 3 HOH 36 222 45 HOH HOH B . D 3 HOH 37 223 46 HOH HOH B . D 3 HOH 38 224 47 HOH HOH B . D 3 HOH 39 225 50 HOH HOH B . D 3 HOH 40 226 51 HOH HOH B . D 3 HOH 41 227 52 HOH HOH B . D 3 HOH 42 228 53 HOH HOH B . D 3 HOH 43 229 54 HOH HOH B . D 3 HOH 44 230 55 HOH HOH B . D 3 HOH 45 231 56 HOH HOH B . D 3 HOH 46 232 57 HOH HOH B . D 3 HOH 47 233 60 HOH HOH B . D 3 HOH 48 234 61 HOH HOH B . D 3 HOH 49 235 62 HOH HOH B . D 3 HOH 50 236 63 HOH HOH B . D 3 HOH 51 237 64 HOH HOH B . D 3 HOH 52 238 65 HOH HOH B . D 3 HOH 53 239 66 HOH HOH B . D 3 HOH 54 240 67 HOH HOH B . D 3 HOH 55 241 69 HOH HOH B . D 3 HOH 56 242 70 HOH HOH B . D 3 HOH 57 243 71 HOH HOH B . D 3 HOH 58 244 72 HOH HOH B . D 3 HOH 59 245 73 HOH HOH B . D 3 HOH 60 246 74 HOH HOH B . D 3 HOH 61 247 75 HOH HOH B . D 3 HOH 62 248 76 HOH HOH B . D 3 HOH 63 249 77 HOH HOH B . D 3 HOH 64 250 78 HOH HOH B . D 3 HOH 65 251 80 HOH HOH B . D 3 HOH 66 252 82 HOH HOH B . D 3 HOH 67 253 83 HOH HOH B . D 3 HOH 68 254 84 HOH HOH B . D 3 HOH 69 255 85 HOH HOH B . D 3 HOH 70 256 88 HOH HOH B . D 3 HOH 71 257 90 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 ADSC . ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SHELXS . ? ? ? ? phasing ? ? ? 5 # _cell.length_a 56.745 _cell.length_b 56.745 _cell.length_c 103.720 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 2GGV _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 64' _symmetry.entry_id 2GGV _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 172 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2GGV _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '30% PEG 1500, 0.1M TRIS, 0.2M lithium cloride, 2mM mercaptoethanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2005-09-20 ? 2 CCD 'ADSC QUANTUM 4' 2005-10-10 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' ? M x-ray 2 2 MAD ? M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 0.9779 1.0 3 0.9785 1.0 4 0.960 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'ALS BEAMLINE 12.3.1' ? 1.0 ALS 12.3.1 2 SYNCHROTRON 'NSLS BEAMLINE X26C' ? '0.9779, 0.9785, 0.960' NSLS X26C # _reflns.entry_id 2GGV _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.8 _reflns.d_resolution_low 49.15 _reflns.number_all 17285 _reflns.number_obs 17285 _reflns.percent_possible_obs 98 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 7.7 _reflns.B_iso_Wilson_estimate 33 _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.9 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98 _reflns_shell.Rmerge_I_obs 0.6 _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.pdbx_Rsym_value 0.6 _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.number_unique_all 2481 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 49.150 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.430 _refine.ls_number_reflns_obs 17282 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.193 _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.228 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 906 _refine.B_iso_mean 36.717 _refine.aniso_B[1][1] 1.530 _refine.aniso_B[2][2] 1.530 _refine.aniso_B[3][3] -2.290 _refine.aniso_B[1][2] 0.760 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.pdbx_overall_ESU_R 0.152 _refine.pdbx_overall_ESU_R_Free 0.137 _refine.overall_SU_ML 0.100 _refine.overall_SU_B 3.198 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2GGV _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 17557 _refine.ls_R_factor_obs 0.193 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1648 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 1738 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 49.150 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1686 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2290 1.426 1.949 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 217 6.409 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 77 32.061 24.935 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 274 12.623 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 18.505 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 242 0.101 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1310 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 692 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1129 0.304 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 115 0.136 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 76 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 18 0.115 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1097 1.109 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1710 1.840 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 691 2.411 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 580 3.648 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.550 _refine_ls_shell.number_reflns_R_work 1205 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.26 _refine_ls_shell.R_factor_R_free 0.264 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1272 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GGV _struct.title 'Crystal structure of the West Nile virus NS2B-NS3 protease, His51Ala mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GGV _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'beta barrel, serine protease, viral protease, flavivirus, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q203W3_WNV Q203W3 1 STDMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMNDPGA 1423 ? 2 UNP Q203W3_WNV Q203W3 2 ;GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCYGG PWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEGEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSY ISAIVQGERMDEPIPAG ; 1507 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GGV A 2 ? 46 ? Q203W3 1423 ? 1467 ? 49 93 2 2 2GGV B 1 ? 177 ? Q203W3 1507 ? 1683 ? 2 178 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GGV MET A 1 ? UNP Q203W3 ? ? 'cloning artifact' 48 1 1 2GGV GLY A 47 ? UNP Q203W3 ? ? 'SEE REMARK 999' 94 2 1 2GGV GLY A 48 ? UNP Q203W3 ? ? 'SEE REMARK 999' 95 3 1 2GGV GLY A 49 ? UNP Q203W3 ? ? 'SEE REMARK 999' 96 4 1 2GGV GLY A 50 ? UNP Q203W3 ? ? 'SEE REMARK 999' 97 5 1 2GGV SER A 51 ? UNP Q203W3 ? ? 'SEE REMARK 999' 98 6 1 2GGV GLY A 52 ? UNP Q203W3 ? ? 'SEE REMARK 999' 99 7 1 2GGV GLY A 53 ? UNP Q203W3 ? ? 'SEE REMARK 999' 100 8 1 2GGV GLY A 54 ? UNP Q203W3 ? ? 'SEE REMARK 999' 101 9 1 2GGV ARG A 55 ? UNP Q203W3 ? ? 'SEE REMARK 999' 102 10 1 2GGV ARG A 56 ? UNP Q203W3 ? ? 'SEE REMARK 999' 103 11 2 2GGV ALA B 50 ? UNP Q203W3 HIS 1556 'engineered mutation' 51 12 2 2GGV GLN B 83 ? UNP Q203W3 LYS 1589 conflict 84 13 2 2GGV ARG B 103 ? UNP Q203W3 LYS 1609 conflict 104 14 2 2GGV LYS B 178 ? UNP Q203W3 ? ? 'cloning artifact' 179 15 2 2GGV GLY B 179 ? UNP Q203W3 ? ? 'cloning artifact' 180 16 2 2GGV HIS B 180 ? UNP Q203W3 ? ? 'expression tag' 181 17 2 2GGV HIS B 181 ? UNP Q203W3 ? ? 'expression tag' 182 18 2 2GGV HIS B 182 ? UNP Q203W3 ? ? 'expression tag' 183 19 2 2GGV HIS B 183 ? UNP Q203W3 ? ? 'expression tag' 184 20 2 2GGV HIS B 184 ? UNP Q203W3 ? ? 'expression tag' 185 21 2 2GGV HIS B 185 ? UNP Q203W3 ? ? 'expression tag' 186 22 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA tetrameric 4 4 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2850 ? 1 MORE -20 ? 1 'SSA (A^2)' 11330 ? 2 'ABSA (A^2)' 7770 ? 2 MORE -58 ? 2 'SSA (A^2)' 20590 ? 3 'ABSA (A^2)' 8430 ? 3 MORE -47 ? 3 'SSA (A^2)' 19930 ? 4 'ABSA (A^2)' 4330 ? 4 MORE -31 ? 4 'SSA (A^2)' 24030 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D 3 1,3 A,B,C,D 4 1,3 A,C 4 4,5 B,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 28.3725000000 0.0000000000 -1.0000000000 0.0000000000 49.1426115377 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 4_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 -28.3725000000 0.0000000000 -1.0000000000 0.0000000000 49.1426115377 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_564 -x+y,-x+1,z-1/3 -0.5000000000 0.8660254038 0.0000000000 -28.3725000000 -0.8660254038 -0.5000000000 0.0000000000 49.1426115377 0.0000000000 0.0000000000 1.0000000000 -34.5733333333 5 'crystal symmetry operation' 6_554 x-y,x,z-1/3 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -34.5733333333 # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a monomer. The H51A mutant also forms dimers in solution. The dimer is generated from the monomer in the asymmetric unit by the operation -x, -y, z. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 16 ? GLY A 23 ? GLU A 63 GLY A 70 1 ? 8 HELX_P HELX_P2 2 LEU B 48 ? LYS B 53 ? LEU B 49 LYS B 54 1 ? 6 HELX_P HELX_P3 3 PRO B 130 ? SER B 134 ? PRO B 131 SER B 135 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY B 62 ? LEU B 64 ? GLY B 63 LEU B 65 A 2 LEU B 57 ? SER B 59 ? LEU B 58 SER B 60 A 3 MET A 5 ? ALA A 11 ? MET A 52 ALA A 58 A 4 GLY B 20 ? ARG B 27 ? GLY B 21 ARG B 28 A 5 SER B 32 ? VAL B 41 ? SER B 33 VAL B 42 A 6 VAL B 44 ? THR B 47 ? VAL B 45 THR B 48 A 7 ARG B 75 ? TYR B 78 ? ARG B 76 TYR B 79 A 8 PRO B 66 ? SER B 70 ? PRO B 67 SER B 71 B 1 SER A 24 ? GLU A 26 ? SER A 71 GLU A 73 B 2 LYS B 106 ? THR B 110 ? LYS B 107 THR B 111 B 3 VAL B 94 ? VAL B 98 ? VAL B 95 VAL B 99 B 4 PRO B 137 ? VAL B 139 ? PRO B 138 VAL B 140 B 5 VAL B 145 ? ILE B 154 ? VAL B 146 ILE B 155 B 6 TYR B 160 ? VAL B 165 ? TYR B 161 VAL B 166 B 7 GLY B 120 ? VAL B 125 ? GLY B 121 VAL B 126 B 8 GLY B 113 ? THR B 117 ? GLY B 114 THR B 118 C 1 VAL A 30 ? LEU A 32 ? VAL A 77 LEU A 79 C 2 PHE A 38 ? LEU A 40 ? PHE A 85 LEU A 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU B 64 ? O LEU B 65 N LEU B 57 ? N LEU B 58 A 2 3 O MET B 58 ? O MET B 59 N MET A 5 ? N MET A 52 A 3 4 N THR A 10 ? N THR A 57 O VAL B 21 ? O VAL B 22 A 4 5 N ILE B 24 ? N ILE B 25 O GLY B 36 ? O GLY B 37 A 5 6 N VAL B 39 ? N VAL B 40 O HIS B 46 ? O HIS B 47 A 6 7 N THR B 47 ? N THR B 48 O LEU B 76 ? O LEU B 77 A 7 8 O CYS B 77 ? O CYS B 78 N TYR B 67 ? N TYR B 68 B 1 2 N SER A 25 ? N SER A 72 O ASN B 107 ? O ASN B 108 B 2 3 O THR B 110 ? O THR B 111 N VAL B 94 ? N VAL B 95 B 3 4 N GLN B 95 ? N GLN B 96 O VAL B 139 ? O VAL B 140 B 4 5 N ILE B 138 ? N ILE B 139 O GLY B 147 ? O GLY B 148 B 5 6 N VAL B 153 ? N VAL B 154 O ILE B 161 ? O ILE B 162 B 6 7 O SER B 162 ? O SER B 163 N VAL B 125 ? N VAL B 126 B 7 8 O ALA B 124 ? O ALA B 125 N GLY B 113 ? N GLY B 114 C 1 2 N ARG A 31 ? N ARG A 78 O GLN A 39 ? O GLN A 86 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 75 ? ? -118.98 71.86 2 1 ASP A 80 ? ? -74.18 -166.46 3 1 ASP A 80 ? ? -74.18 -167.07 4 1 GLU B 12 ? ? -107.40 54.91 5 1 VAL B 100 ? ? -109.44 72.71 6 1 GLU B 120 ? ? -94.22 30.47 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 400 ;COMPOUND THE PROTEINS NS2B AND NS3PRO ARE CONNECTED THROUGH A LINKER GGGGSGGGRR. ; 999 ;SEQUENCE THIS IS THE LINKER SEQUENCE BETWEEN THE TWO DIFFERENT PROTEINS. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 48 ? A MET 1 2 1 Y 1 A SER 49 ? A SER 2 3 1 Y 1 A GLY 94 ? A GLY 47 4 1 Y 1 A GLY 95 ? A GLY 48 5 1 Y 1 A GLY 96 ? A GLY 49 6 1 Y 1 A GLY 97 ? A GLY 50 7 1 Y 1 A SER 98 ? A SER 51 8 1 Y 1 A GLY 99 ? A GLY 52 9 1 Y 1 A GLY 100 ? A GLY 53 10 1 Y 1 A GLY 101 ? A GLY 54 11 1 Y 1 A ARG 102 ? A ARG 55 12 1 Y 1 A ARG 103 ? A ARG 56 13 1 Y 1 B GLY 2 ? B GLY 1 14 1 Y 1 B VAL 3 ? B VAL 2 15 1 Y 1 B LEU 4 ? B LEU 3 16 1 Y 1 B TRP 5 ? B TRP 4 17 1 Y 1 B ASP 6 ? B ASP 5 18 1 Y 1 B THR 7 ? B THR 6 19 1 Y 1 B PRO 8 ? B PRO 7 20 1 Y 1 B SER 9 ? B SER 8 21 1 Y 1 B LYS 179 ? B LYS 178 22 1 Y 1 B GLY 180 ? B GLY 179 23 1 Y 1 B HIS 181 ? B HIS 180 24 1 Y 1 B HIS 182 ? B HIS 181 25 1 Y 1 B HIS 183 ? B HIS 182 26 1 Y 1 B HIS 184 ? B HIS 183 27 1 Y 1 B HIS 185 ? B HIS 184 28 1 Y 1 B HIS 186 ? B HIS 185 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 2GGV _atom_sites.fract_transf_matrix[1][1] 0.01762 _atom_sites.fract_transf_matrix[1][2] 0.01017 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02035 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00964 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_