HEADER HORMONE/GROWTH FACTOR 24-MAR-06 2GH0 TITLE GROWTH FACTOR/RECEPTOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARTEMIN; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GDNF FAMILY RECEPTOR ALPHA-3; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: GFR-ALPHA-3; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GFRA3; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS CYSTINE-KNOT, HELIX BUNDLE, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.Q.WANG REVDAT 4 29-JUL-20 2GH0 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 2GH0 1 VERSN REVDAT 2 24-FEB-09 2GH0 1 VERSN REVDAT 1 27-JUN-06 2GH0 0 JRNL AUTH X.WANG,R.H.BALOH,J.MILBRANDT,K.C.GARCIA JRNL TITL STRUCTURE OF ARTEMIN COMPLEXED WITH ITS RECEPTOR GFRALPHA3: JRNL TITL 2 CONVERGENT RECOGNITION OF GLIAL CELL LINE-DERIVED JRNL TITL 3 NEUROTROPHIC FACTORS. JRNL REF STRUCTURE V. 14 1083 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16765900 JRNL DOI 10.1016/J.STR.2006.05.010 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 51067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2740 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3720 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4772 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6480 ; 1.824 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 5.834 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;33.050 ;21.373 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;15.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;18.174 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 727 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3596 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2007 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3311 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 220 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.270 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3103 ; 1.280 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4802 ; 1.889 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1849 ; 3.510 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1678 ; 5.082 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 120 C 219 REMARK 3 RESIDUE RANGE : D 121 D 219 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9776 -7.6124 -29.7207 REMARK 3 T TENSOR REMARK 3 T11: -0.0377 T22: 0.0668 REMARK 3 T33: -0.0680 T12: -0.1372 REMARK 3 T13: -0.0224 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 4.6553 L22: 2.2190 REMARK 3 L33: 2.2951 L12: 2.9855 REMARK 3 L13: -3.2632 L23: -2.1412 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.0100 S13: 0.1615 REMARK 3 S21: -0.0850 S22: 0.0077 S23: 0.1062 REMARK 3 S31: -0.0170 S32: -0.1241 S33: -0.0447 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 357 REMARK 3 RESIDUE RANGE : A 100 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1435 15.6000 -46.3050 REMARK 3 T TENSOR REMARK 3 T11: -0.0927 T22: -0.2010 REMARK 3 T33: -0.1727 T12: -0.0439 REMARK 3 T13: -0.0038 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.3840 L22: 2.1270 REMARK 3 L33: 2.2184 L12: 1.0070 REMARK 3 L13: -0.4526 L23: -0.4072 REMARK 3 S TENSOR REMARK 3 S11: 0.1800 S12: -0.2985 S13: 0.1297 REMARK 3 S21: 0.2095 S22: -0.1943 S23: 0.0544 REMARK 3 S31: -0.0857 S32: 0.0584 S33: 0.0143 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 159 B 357 REMARK 3 RESIDUE RANGE : B 1100 B 1100 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9561 -29.2393 2.8018 REMARK 3 T TENSOR REMARK 3 T11: -0.1618 T22: -0.0712 REMARK 3 T33: -0.0709 T12: 0.0126 REMARK 3 T13: -0.0412 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.4516 L22: 1.8491 REMARK 3 L33: 3.8480 L12: 0.5799 REMARK 3 L13: -0.2269 L23: -0.2914 REMARK 3 S TENSOR REMARK 3 S11: -0.1621 S12: 0.0197 S13: -0.1755 REMARK 3 S21: 0.0529 S22: 0.0732 S23: -0.2208 REMARK 3 S31: 0.1403 S32: 0.0176 S33: 0.0889 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE BUFFER, 0.1 M MGCL2, REMARK 280 AND 20% (V/V) ETHANOL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 220 REMARK 465 ASP D 120 REMARK 465 GLY D 220 REMARK 465 LYS A 151 REMARK 465 LEU A 152 REMARK 465 ASN A 153 REMARK 465 MET A 154 REMARK 465 LEU A 155 REMARK 465 LYS A 156 REMARK 465 PRO A 157 REMARK 465 GLN A 358 REMARK 465 ASP A 359 REMARK 465 TRP A 360 REMARK 465 PRO A 361 REMARK 465 HIS A 362 REMARK 465 PRO A 363 REMARK 465 LYS B 151 REMARK 465 LEU B 152 REMARK 465 ASN B 153 REMARK 465 MET B 154 REMARK 465 LEU B 155 REMARK 465 LYS B 156 REMARK 465 PRO B 157 REMARK 465 ASP B 158 REMARK 465 GLN B 358 REMARK 465 ASP B 359 REMARK 465 TRP B 360 REMARK 465 PRO B 361 REMARK 465 HIS B 362 REMARK 465 PRO B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 467 O HOH A 470 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 180 CE LYS A 180 NZ 0.199 REMARK 500 GLU A 250 CD GLU A 250 OE2 0.066 REMARK 500 GLY A 322 C ASN A 323 N 0.284 REMARK 500 ARG A 350 CG ARG A 350 CD 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 230 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 230 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 230 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS D 154 59.54 -119.08 REMARK 500 ARG D 156 -69.50 -151.69 REMARK 500 ALA D 157 38.85 -81.60 REMARK 500 HIS A 190 -105.98 -54.78 REMARK 500 CYS A 191 117.01 54.30 REMARK 500 LEU A 217 54.30 -98.03 REMARK 500 THR A 283 -83.03 -113.98 REMARK 500 MET A 300 50.72 -98.72 REMARK 500 ASN A 323 4.42 -63.85 REMARK 500 LEU B 217 55.62 -98.79 REMARK 500 THR B 283 -98.60 -114.45 REMARK 500 MET B 300 58.94 -117.38 REMARK 500 ASN B 323 -9.05 -57.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 187 GLY A 188 149.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 2GH0 C 122 220 UNP Q5T4W7 ARTN_HUMAN 122 220 DBREF 2GH0 D 122 220 UNP Q5T4W7 ARTN_HUMAN 122 220 DBREF 2GH0 A 151 363 UNP O60609 GFRA3_HUMAN 151 363 DBREF 2GH0 B 151 363 UNP O60609 GFRA3_HUMAN 151 363 SEQADV 2GH0 ASP C 120 UNP Q5T4W7 CLONING ARTIFACT SEQADV 2GH0 PRO C 121 UNP Q5T4W7 CLONING ARTIFACT SEQADV 2GH0 ASP D 120 UNP Q5T4W7 CLONING ARTIFACT SEQADV 2GH0 PRO D 121 UNP Q5T4W7 CLONING ARTIFACT SEQRES 1 C 101 ASP PRO GLY CYS ARG LEU ARG SER GLN LEU VAL PRO VAL SEQRES 2 C 101 ARG ALA LEU GLY LEU GLY HIS ARG SER ASP GLU LEU VAL SEQRES 3 C 101 ARG PHE ARG PHE CYS SER GLY SER CYS ARG ARG ALA ARG SEQRES 4 C 101 SER PRO HIS ASP LEU SER LEU ALA SER LEU LEU GLY ALA SEQRES 5 C 101 GLY ALA LEU ARG PRO PRO PRO GLY SER ARG PRO VAL SER SEQRES 6 C 101 GLN PRO CYS CYS ARG PRO THR ARG TYR GLU ALA VAL SER SEQRES 7 C 101 PHE MET ASP VAL ASN SER THR TRP ARG THR VAL ASP ARG SEQRES 8 C 101 LEU SER ALA THR ALA CYS GLY CYS LEU GLY SEQRES 1 D 101 ASP PRO GLY CYS ARG LEU ARG SER GLN LEU VAL PRO VAL SEQRES 2 D 101 ARG ALA LEU GLY LEU GLY HIS ARG SER ASP GLU LEU VAL SEQRES 3 D 101 ARG PHE ARG PHE CYS SER GLY SER CYS ARG ARG ALA ARG SEQRES 4 D 101 SER PRO HIS ASP LEU SER LEU ALA SER LEU LEU GLY ALA SEQRES 5 D 101 GLY ALA LEU ARG PRO PRO PRO GLY SER ARG PRO VAL SER SEQRES 6 D 101 GLN PRO CYS CYS ARG PRO THR ARG TYR GLU ALA VAL SER SEQRES 7 D 101 PHE MET ASP VAL ASN SER THR TRP ARG THR VAL ASP ARG SEQRES 8 D 101 LEU SER ALA THR ALA CYS GLY CYS LEU GLY SEQRES 1 A 213 LYS LEU ASN MET LEU LYS PRO ASP SER ASP LEU CYS LEU SEQRES 2 A 213 LYS PHE ALA MET LEU CYS THR LEU ASN ASP LYS CYS ASP SEQRES 3 A 213 ARG LEU ARG LYS ALA TYR GLY GLU ALA CYS SER GLY PRO SEQRES 4 A 213 HIS CYS GLN ARG HIS VAL CYS LEU ARG GLN LEU LEU THR SEQRES 5 A 213 PHE PHE GLU LYS ALA ALA GLU PRO HIS ALA GLN GLY LEU SEQRES 6 A 213 LEU LEU CYS PRO CYS ALA PRO ASN ASP ARG GLY CYS GLY SEQRES 7 A 213 GLU ARG ARG ARG ASN THR ILE ALA PRO ASN CYS ALA LEU SEQRES 8 A 213 PRO PRO VAL ALA PRO ASN CYS LEU GLU LEU ARG ARG LEU SEQRES 9 A 213 CYS PHE SER ASP PRO LEU CYS ARG SER ARG LEU VAL ASP SEQRES 10 A 213 PHE GLN THR HIS CYS HIS PRO MET ASP ILE LEU GLY THR SEQRES 11 A 213 CYS ALA THR GLU GLN SER ARG CYS LEU ARG ALA TYR LEU SEQRES 12 A 213 GLY LEU ILE GLY THR ALA MET THR PRO ASN PHE VAL SER SEQRES 13 A 213 ASN VAL ASN THR SER VAL ALA LEU SER CYS THR CYS ARG SEQRES 14 A 213 GLY SER GLY ASN LEU GLN GLU GLU CYS GLU MET LEU GLU SEQRES 15 A 213 GLY PHE PHE SER HIS ASN PRO CYS LEU THR GLU ALA ILE SEQRES 16 A 213 ALA ALA LYS MET ARG PHE HIS SER GLN LEU PHE SER GLN SEQRES 17 A 213 ASP TRP PRO HIS PRO SEQRES 1 B 213 LYS LEU ASN MET LEU LYS PRO ASP SER ASP LEU CYS LEU SEQRES 2 B 213 LYS PHE ALA MET LEU CYS THR LEU ASN ASP LYS CYS ASP SEQRES 3 B 213 ARG LEU ARG LYS ALA TYR GLY GLU ALA CYS SER GLY PRO SEQRES 4 B 213 HIS CYS GLN ARG HIS VAL CYS LEU ARG GLN LEU LEU THR SEQRES 5 B 213 PHE PHE GLU LYS ALA ALA GLU PRO HIS ALA GLN GLY LEU SEQRES 6 B 213 LEU LEU CYS PRO CYS ALA PRO ASN ASP ARG GLY CYS GLY SEQRES 7 B 213 GLU ARG ARG ARG ASN THR ILE ALA PRO ASN CYS ALA LEU SEQRES 8 B 213 PRO PRO VAL ALA PRO ASN CYS LEU GLU LEU ARG ARG LEU SEQRES 9 B 213 CYS PHE SER ASP PRO LEU CYS ARG SER ARG LEU VAL ASP SEQRES 10 B 213 PHE GLN THR HIS CYS HIS PRO MET ASP ILE LEU GLY THR SEQRES 11 B 213 CYS ALA THR GLU GLN SER ARG CYS LEU ARG ALA TYR LEU SEQRES 12 B 213 GLY LEU ILE GLY THR ALA MET THR PRO ASN PHE VAL SER SEQRES 13 B 213 ASN VAL ASN THR SER VAL ALA LEU SER CYS THR CYS ARG SEQRES 14 B 213 GLY SER GLY ASN LEU GLN GLU GLU CYS GLU MET LEU GLU SEQRES 15 B 213 GLY PHE PHE SER HIS ASN PRO CYS LEU THR GLU ALA ILE SEQRES 16 B 213 ALA ALA LYS MET ARG PHE HIS SER GLN LEU PHE SER GLN SEQRES 17 B 213 ASP TRP PRO HIS PRO MODRES 2GH0 ASN A 309 ASN GLYCOSYLATION SITE MODRES 2GH0 ASN B 309 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET NAG B1100 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE FORMUL 5 NAG 3(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 FORMUL 5 MAN 2(C6 H12 O6) FORMUL 7 HOH *236(H2 O) HELIX 1 1 ARG C 133 LEU C 135 5 3 HELIX 2 2 CYS C 154 ARG C 158 5 5 HELIX 3 3 SER C 159 ALA C 171 1 13 HELIX 4 4 ARG D 133 LEU D 135 5 3 HELIX 5 5 SER D 159 GLY D 172 1 14 HELIX 6 6 ASP A 160 LEU A 171 1 12 HELIX 7 7 ASN A 172 CYS A 186 1 15 HELIX 8 8 GLN A 192 ALA A 207 1 16 HELIX 9 9 ALA A 208 LEU A 217 1 10 HELIX 10 10 ASP A 224 THR A 234 1 11 HELIX 11 11 ALA A 236 LEU A 241 1 6 HELIX 12 12 ASN A 247 SER A 257 1 11 HELIX 13 13 ASP A 258 CYS A 272 1 15 HELIX 14 14 GLU A 284 GLY A 294 1 11 HELIX 15 15 SER A 321 ASN A 323 5 3 HELIX 16 16 LEU A 324 HIS A 337 1 14 HELIX 17 17 ASN A 338 PHE A 356 1 19 HELIX 18 18 ASP B 160 ASN B 172 1 13 HELIX 19 19 ASN B 172 CYS B 186 1 15 HELIX 20 20 GLN B 192 ALA B 207 1 16 HELIX 21 21 ALA B 208 LEU B 217 1 10 HELIX 22 22 ASP B 224 THR B 234 1 11 HELIX 23 23 ALA B 236 LEU B 241 1 6 HELIX 24 24 ASN B 247 SER B 257 1 11 HELIX 25 25 ASP B 258 CYS B 272 1 15 HELIX 26 26 GLU B 284 GLY B 294 1 11 HELIX 27 27 SER B 321 ASN B 323 5 3 HELIX 28 28 LEU B 324 HIS B 337 1 14 HELIX 29 29 ASN B 338 SER B 357 1 20 SHEET 1 A 2 ARG C 124 PRO C 131 0 SHEET 2 A 2 LEU C 144 SER C 151 -1 O PHE C 147 N GLN C 128 SHEET 1 B 2 CYS C 187 MET C 199 0 SHEET 2 B 2 TRP C 205 LEU C 219 -1 O LEU C 219 N CYS C 187 SHEET 1 C 2 ARG D 124 PRO D 131 0 SHEET 2 C 2 LEU D 144 SER D 151 -1 O PHE D 149 N ARG D 126 SHEET 1 D 2 CYS D 187 MET D 199 0 SHEET 2 D 2 TRP D 205 LEU D 219 -1 O SER D 212 N GLU D 194 SHEET 1 E 2 PRO A 302 PHE A 304 0 SHEET 2 E 2 VAL A 312 LEU A 314 -1 O ALA A 313 N ASN A 303 SHEET 1 F 2 PRO B 302 PHE B 304 0 SHEET 2 F 2 VAL B 312 LEU B 314 -1 O ALA B 313 N ASN B 303 SSBOND 1 CYS C 123 CYS C 188 1555 1555 2.04 SSBOND 2 CYS C 150 CYS C 216 1555 1555 2.01 SSBOND 3 CYS C 154 CYS C 218 1555 1555 2.14 SSBOND 4 CYS C 187 CYS D 187 1555 1555 2.08 SSBOND 5 CYS D 123 CYS D 188 1555 1555 2.06 SSBOND 6 CYS D 150 CYS D 216 1555 1555 2.01 SSBOND 7 CYS D 154 CYS D 218 1555 1555 2.06 SSBOND 8 CYS A 162 CYS A 218 1555 1555 2.02 SSBOND 9 CYS A 169 CYS A 175 1555 1555 2.10 SSBOND 10 CYS A 186 CYS A 196 1555 1555 2.06 SSBOND 11 CYS A 191 CYS A 239 1555 1555 2.03 SSBOND 12 CYS A 220 CYS A 227 1555 1555 2.12 SSBOND 13 CYS A 248 CYS A 316 1555 1555 2.02 SSBOND 14 CYS A 255 CYS A 261 1555 1555 2.07 SSBOND 15 CYS A 272 CYS A 288 1555 1555 2.16 SSBOND 16 CYS A 281 CYS A 340 1555 1555 2.08 SSBOND 17 CYS A 318 CYS A 328 1555 1555 2.11 SSBOND 18 CYS B 162 CYS B 218 1555 1555 2.04 SSBOND 19 CYS B 169 CYS B 175 1555 1555 2.08 SSBOND 20 CYS B 186 CYS B 196 1555 1555 2.06 SSBOND 21 CYS B 191 CYS B 239 1555 1555 2.05 SSBOND 22 CYS B 220 CYS B 227 1555 1555 2.09 SSBOND 23 CYS B 248 CYS B 316 1555 1555 1.98 SSBOND 24 CYS B 255 CYS B 261 1555 1555 2.06 SSBOND 25 CYS B 272 CYS B 288 1555 1555 2.12 SSBOND 26 CYS B 281 CYS B 340 1555 1555 2.08 SSBOND 27 CYS B 318 CYS B 328 1555 1555 2.06 LINK ND2 ASN A 309 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 309 C1 NAG B1100 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.37 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.47 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.46 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.42 CRYST1 73.678 41.460 119.863 90.00 103.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013573 0.000000 0.003274 0.00000 SCALE2 0.000000 0.024120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008582 0.00000