HEADER TRANSCRIPTION, METAL BINDING PROTEIN 27-MAR-06 2GHF TITLE SOLUTION STRUCTURE OF THE COMPLETE ZINC-FINGER REGION OF HUMAN ZINC- TITLE 2 FINGERS AND HOMEOBOXES 1 (ZHX1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGERS AND HOMEOBOXES PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC-FINGER REGION; COMPND 5 SYNONYM: ZHX1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZHX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (NOVAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-14 KEYWDS C2H2 ZINC FINGERS; 4-STRANDED PARALLEL/ANTI-PARALLEL BETA-SHEET, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, KEYWDS 3 TRANSCRIPTION, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.WIENK,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 4 09-MAR-22 2GHF 1 REMARK SEQADV REVDAT 3 14-APR-09 2GHF 1 ATOM SEQADV REVDAT 2 24-FEB-09 2GHF 1 VERSN REVDAT 1 11-APR-06 2GHF 0 JRNL AUTH H.WIENK,I.LAMMERS,J.WU,A.HOTZE,R.WECHSELBERGER,R.KAPTEIN, JRNL AUTH 2 G.FOLKERS JRNL TITL SOLUTION STRUCTURE OF THE ZINC-FINGER REGION OF HUMAN JRNL TITL 2 ZINC-FINGERS AND HOMEOBOXES 1 (ZHX1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON 2034 DISTANCE REMARK 3 RESTRAINTS (INCLUDING FOR EACH OF THE TWO ZINC-FINGERS 4 C2H2-TO- REMARK 3 ZINC RESTRAINTS AND 6 C2H2 RESTRAINTS TO ARRANGE THEIR ZN- REMARK 3 COORDINATING ATOMS IN A TETRAHEDRON). IN ADDITION 192 DIHEDRAL REMARK 3 RESTRAINTS WERE USED (100 FROM TALOS AND 92 FROM CSI). REMARK 4 REMARK 4 2GHF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037121. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM ZHX1-ZNF; 50 MM NAPO4; REMARK 210 150 MM NACL; 40 UM ZNCL2, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, SPARKY 3, CYANA 2.1 REMARK 210 METHOD USED : SPARKY ASSIGNMENT - CYANA REMARK 210 STRUCTURE CALCULATIONS; RUN1: REMARK 210 USE 70% MOST INTENSE PEAKS FOR REMARK 210 INITIAL FOLD, RUN2: REFINE REMARK 210 INITIAL FOLD USING ALL PEAKS - REMARK 210 WATER REFINEMENT WITH CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 137 OE2 GLU A 145 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 20 GLU A 106 CD GLU A 106 OE2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 20 CYS A 104 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A -6 136.77 89.65 REMARK 500 1 HIS A -3 -53.52 -167.05 REMARK 500 1 HIS A -1 -34.64 -174.08 REMARK 500 1 LYS A 65 -91.15 66.62 REMARK 500 1 VAL A 66 135.14 176.40 REMARK 500 1 GLU A 67 -56.78 -123.47 REMARK 500 1 LEU A 98 -95.58 -148.25 REMARK 500 1 ASN A 99 -81.45 -139.11 REMARK 500 1 HIS A 125 70.01 -114.72 REMARK 500 1 ASN A 139 -43.84 74.74 REMARK 500 1 ASN A 140 -150.46 -86.83 REMARK 500 1 ASP A 150 -52.25 -155.14 REMARK 500 2 LYS A 65 153.56 71.92 REMARK 500 2 HIS A 125 69.34 -114.71 REMARK 500 2 ASN A 140 -83.48 -143.03 REMARK 500 2 ASP A 150 -52.46 -156.39 REMARK 500 3 LYS A 65 -45.30 64.88 REMARK 500 3 VAL A 66 122.05 -177.38 REMARK 500 3 GLU A 67 -80.56 -100.13 REMARK 500 3 CYS A 75 113.49 -164.03 REMARK 500 3 ASN A 99 -85.37 -44.97 REMARK 500 3 HIS A 125 70.21 -114.42 REMARK 500 3 ASN A 140 -87.13 -145.58 REMARK 500 3 ASP A 150 -57.68 -151.00 REMARK 500 3 LEU A 151 20.45 -79.81 REMARK 500 4 ALA A -7 -79.42 -98.61 REMARK 500 4 HIS A -4 -33.88 -140.92 REMARK 500 4 ASN A 60 113.12 81.30 REMARK 500 4 LYS A 65 -166.16 -101.68 REMARK 500 4 GLU A 67 -80.51 -96.06 REMARK 500 4 CYS A 75 123.25 -170.89 REMARK 500 4 ASN A 99 -174.82 177.16 REMARK 500 4 TYR A 114 -44.85 71.03 REMARK 500 4 HIS A 125 70.19 -114.08 REMARK 500 4 ASN A 140 -83.54 -142.27 REMARK 500 4 ASP A 150 -53.61 -155.28 REMARK 500 5 HIS A -6 124.67 73.94 REMARK 500 5 HIS A -5 -66.38 -129.35 REMARK 500 5 HIS A -4 -60.80 63.70 REMARK 500 5 HIS A -3 89.53 -164.50 REMARK 500 5 LYS A 65 128.89 69.28 REMARK 500 5 VAL A 66 118.01 -31.79 REMARK 500 5 ASN A 99 -72.24 -82.19 REMARK 500 5 HIS A 125 69.02 -119.02 REMARK 500 5 ASN A 139 -51.33 74.32 REMARK 500 5 ASN A 140 -78.29 -79.36 REMARK 500 5 ASP A 150 -50.82 -151.36 REMARK 500 6 ALA A -7 32.60 -142.43 REMARK 500 6 ASN A 60 69.77 -157.47 REMARK 500 6 GLU A 67 -79.09 -97.86 REMARK 500 REMARK 500 THIS ENTRY HAS 191 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 93 NE2 104.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 125 NE2 100.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 305 DBREF 2GHF A 60 153 UNP Q9UKY1 ZHX1_HUMAN 60 153 SEQADV 2GHF MET A -8 UNP Q9UKY1 CLONING ARTIFACT SEQADV 2GHF ALA A -7 UNP Q9UKY1 CLONING ARTIFACT SEQADV 2GHF HIS A -6 UNP Q9UKY1 EXPRESSION TAG SEQADV 2GHF HIS A -5 UNP Q9UKY1 EXPRESSION TAG SEQADV 2GHF HIS A -4 UNP Q9UKY1 EXPRESSION TAG SEQADV 2GHF HIS A -3 UNP Q9UKY1 EXPRESSION TAG SEQADV 2GHF HIS A -2 UNP Q9UKY1 EXPRESSION TAG SEQADV 2GHF HIS A -1 UNP Q9UKY1 EXPRESSION TAG SEQRES 1 A 102 MET ALA HIS HIS HIS HIS HIS HIS ASN GLN GLN ASN LYS SEQRES 2 A 102 LYS VAL GLU GLY GLY TYR GLU CYS LYS TYR CYS THR PHE SEQRES 3 A 102 GLN THR PRO ASP LEU ASN MET PHE THR PHE HIS VAL ASP SEQRES 4 A 102 SER GLU HIS PRO ASN VAL VAL LEU ASN SER SER TYR VAL SEQRES 5 A 102 CYS VAL GLU CYS ASN PHE LEU THR LYS ARG TYR ASP ALA SEQRES 6 A 102 LEU SER GLU HIS ASN LEU LYS TYR HIS PRO GLY GLU GLU SEQRES 7 A 102 ASN PHE LYS LEU THR MET VAL LYS ARG ASN ASN GLN THR SEQRES 8 A 102 ILE PHE GLU GLN THR ILE ASN ASP LEU THR PHE HET ZN A 205 1 HET ZN A 305 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ASP A 81 HIS A 93 1 13 HELIX 2 2 TYR A 114 GLU A 119 1 6 HELIX 3 3 GLU A 119 TYR A 124 1 6 SHEET 1 A 2 TYR A 70 GLU A 71 0 SHEET 2 A 2 GLN A 78 THR A 79 -1 O THR A 79 N TYR A 70 SHEET 1 B 4 PHE A 109 THR A 111 0 SHEET 2 B 4 TYR A 102 CYS A 104 -1 N CYS A 104 O PHE A 109 SHEET 3 B 4 PHE A 144 ILE A 148 1 O GLN A 146 N VAL A 103 SHEET 4 B 4 PHE A 131 MET A 135 -1 N LYS A 132 O THR A 147 LINK NE2 HIS A 88 ZN ZN A 205 1555 1555 1.79 LINK NE2 HIS A 93 ZN ZN A 205 1555 1555 2.37 LINK NE2 HIS A 120 ZN ZN A 305 1555 1555 1.86 LINK NE2 HIS A 125 ZN ZN A 305 1555 1555 2.05 SITE 1 AC1 4 CYS A 72 CYS A 75 HIS A 88 HIS A 93 SITE 1 AC2 5 CYS A 104 GLU A 106 CYS A 107 HIS A 120 SITE 2 AC2 5 HIS A 125 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1