HEADER LIGASE 28-MAR-06 2GI3 TITLE CRYSTAL STRUCTURE OF GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A TITLE 2 (TM1272) FROM THERMOTOGA MARITIMA AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLU-ADT SUBUNIT A; COMPND 5 EC: 6.3.5.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: GATA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1272, GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A (GLU-ADT KEYWDS 2 SUBUNIT A), STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2GI3 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2GI3 1 VERSN REVDAT 3 24-FEB-09 2GI3 1 VERSN REVDAT 2 02-MAY-06 2GI3 1 REMARK REVDAT 1 11-APR-06 2GI3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE JRNL TITL 2 SUBUNIT A (TM1272) FROM THERMOTOGA MARITIMA AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 57293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.369 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3640 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2523 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4924 ; 1.490 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6163 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 6.212 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;35.626 ;23.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;13.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.441 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3972 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 726 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 766 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2754 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1774 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1893 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 309 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.019 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.266 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.300 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2475 ; 2.395 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 916 ; 0.570 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3679 ; 2.919 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 5.525 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1245 ; 7.143 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN REMARK 3 THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED REMARK 3 TO 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 4 REMARK 4 2GI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918381, 0.978662 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : 0.15500 REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : 0.72900 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M CACL2, 30.0% MPD, 0.1M ACETATE REMARK 280 PH 4.6 , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.32467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.66233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.66233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.32467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY AND STATIC LIGHT SCATTERING REMARK 300 DATA SUPPORT THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 20.66233 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 307 REMARK 465 ALA A 308 REMARK 465 ARG A 309 REMARK 465 PHE A 310 REMARK 465 ASP A 311 REMARK 465 GLY A 312 REMARK 465 VAL A 313 REMARK 465 LYS A 314 REMARK 465 TYR A 315 REMARK 465 GLY A 316 REMARK 465 LEU A 317 REMARK 465 ARG A 318 REMARK 465 ILE A 319 REMARK 465 LYS A 320 REMARK 465 GLU A 321 REMARK 465 LYS A 322 REMARK 465 GLY A 323 REMARK 465 LEU A 324 REMARK 465 ARG A 325 REMARK 465 GLU A 326 REMARK 465 MSE A 327 REMARK 465 TYR A 328 REMARK 465 MSE A 329 REMARK 465 LYS A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 ASN A 306 CG OD1 ND2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LYS A 362 CE NZ REMARK 470 LYS A 474 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 101.31 -169.66 REMARK 500 LYS A 54 61.08 -107.29 REMARK 500 CYS A 78 29.09 48.95 REMARK 500 SER A 119 -4.13 -146.60 REMARK 500 THR A 120 -5.00 74.20 REMARK 500 ASP A 133 104.15 -173.25 REMARK 500 SER A 142 43.58 -91.26 REMARK 500 SER A 305 47.28 -97.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 481 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283137 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2GI3 A 1 475 UNP Q9X0Z9 GATA_THEMA 1 475 SEQADV 2GI3 GLY A 0 UNP Q9X0Z9 EXPRESSION TAG SEQADV 2GI3 MSE A 1 UNP Q9X0Z9 MET 1 MODIFIED RESIDUE SEQADV 2GI3 MSE A 74 UNP Q9X0Z9 MET 74 MODIFIED RESIDUE SEQADV 2GI3 MSE A 98 UNP Q9X0Z9 MET 98 MODIFIED RESIDUE SEQADV 2GI3 MSE A 116 UNP Q9X0Z9 MET 116 MODIFIED RESIDUE SEQADV 2GI3 MSE A 153 UNP Q9X0Z9 MET 153 MODIFIED RESIDUE SEQADV 2GI3 MSE A 214 UNP Q9X0Z9 MET 214 MODIFIED RESIDUE SEQADV 2GI3 MSE A 245 UNP Q9X0Z9 MET 245 MODIFIED RESIDUE SEQADV 2GI3 MSE A 327 UNP Q9X0Z9 MET 327 MODIFIED RESIDUE SEQADV 2GI3 MSE A 329 UNP Q9X0Z9 MET 329 MODIFIED RESIDUE SEQADV 2GI3 MSE A 345 UNP Q9X0Z9 MET 345 MODIFIED RESIDUE SEQADV 2GI3 MSE A 364 UNP Q9X0Z9 MET 364 MODIFIED RESIDUE SEQADV 2GI3 MSE A 408 UNP Q9X0Z9 MET 408 MODIFIED RESIDUE SEQADV 2GI3 MSE A 467 UNP Q9X0Z9 MET 467 MODIFIED RESIDUE SEQRES 1 A 476 GLY MSE ILE ASP LEU ASP PHE ARG LYS LEU THR ILE GLU SEQRES 2 A 476 GLU CYS LEU LYS LEU SER GLU GLU GLU ARG GLU LYS LEU SEQRES 3 A 476 PRO GLN LEU SER LEU GLU THR ILE LYS ARG LEU ASP PRO SEQRES 4 A 476 HIS VAL LYS ALA PHE ILE SER VAL ARG GLU ASN VAL SER SEQRES 5 A 476 VAL GLU LYS LYS GLY LYS PHE TRP GLY ILE PRO VAL ALA SEQRES 6 A 476 ILE LYS ASP ASN ILE LEU THR LEU GLY MSE ARG THR THR SEQRES 7 A 476 CYS ALA SER ARG ILE LEU GLU ASN TYR GLU SER VAL PHE SEQRES 8 A 476 ASP ALA THR VAL VAL LYS LYS MSE LYS GLU ALA GLY PHE SEQRES 9 A 476 VAL VAL VAL GLY LYS ALA ASN LEU ASP GLU PHE ALA MSE SEQRES 10 A 476 GLY SER SER THR GLU ARG SER ALA PHE PHE PRO THR ARG SEQRES 11 A 476 ASN PRO TRP ASP LEU GLU ARG VAL PRO GLY GLY SER SER SEQRES 12 A 476 GLY GLY SER ALA ALA ALA VAL SER ALA GLY MSE VAL VAL SEQRES 13 A 476 ALA ALA LEU GLY SER ASP THR GLY GLY SER VAL ARG GLN SEQRES 14 A 476 PRO ALA SER LEU CYS GLY VAL VAL GLY TYR LYS PRO THR SEQRES 15 A 476 TYR GLY LEU VAL SER ARG TYR GLY LEU VAL ALA PHE ALA SEQRES 16 A 476 SER SER LEU ASP GLN ILE GLY PRO ILE THR LYS THR VAL SEQRES 17 A 476 ARG ASP ALA ALA ILE LEU MSE GLU ILE ILE SER GLY ARG SEQRES 18 A 476 ASP GLU ASN ASP ALA THR THR VAL ASN ARG LYS VAL ASP SEQRES 19 A 476 PHE LEU SER GLU ILE GLU GLU GLY VAL SER GLY MSE LYS SEQRES 20 A 476 PHE ALA VAL PRO GLU GLU ILE TYR GLU HIS ASP ILE GLU SEQRES 21 A 476 GLU GLY VAL SER GLU ARG PHE GLU GLU ALA LEU LYS LEU SEQRES 22 A 476 LEU GLU ARG LEU GLY ALA LYS VAL GLU ARG VAL LYS ILE SEQRES 23 A 476 PRO HIS ILE LYS TYR SER VAL ALA THR TYR TYR VAL ILE SEQRES 24 A 476 ALA PRO ALA GLU ALA SER SER ASN LEU ALA ARG PHE ASP SEQRES 25 A 476 GLY VAL LYS TYR GLY LEU ARG ILE LYS GLU LYS GLY LEU SEQRES 26 A 476 ARG GLU MSE TYR MSE LYS THR ARG ASN VAL GLY PHE GLY SEQRES 27 A 476 GLU GLU VAL ARG ARG ARG ILE MSE ILE GLY THR PHE THR SEQRES 28 A 476 LEU SER ALA ALA TYR TYR GLU ALA TYR PHE ASN LYS ALA SEQRES 29 A 476 MSE LYS VAL ARG ARG LYS ILE SER ASP GLU LEU ASN GLU SEQRES 30 A 476 VAL LEU SER GLN TYR ASP ALA ILE LEU THR PRO THR SER SEQRES 31 A 476 PRO VAL THR ALA PHE LYS ILE GLY GLU ILE LYS ASP PRO SEQRES 32 A 476 LEU THR TYR TYR LEU MSE ASP ILE PHE THR ILE PRO ALA SEQRES 33 A 476 ASN LEU ALA GLY LEU PRO ALA ILE SER VAL PRO PHE GLY SEQRES 34 A 476 PHE SER ASN ASN LEU PRO VAL GLY VAL GLN VAL ILE GLY SEQRES 35 A 476 ARG ARG PHE ALA ASP GLY LYS VAL PHE ARG ILE ALA ARG SEQRES 36 A 476 ALA ILE GLU LYS ASN SER PRO TYR ASN GLU ASN GLY MSE SEQRES 37 A 476 PHE PRO LEU PRO GLU VAL LYS ALA MODRES 2GI3 MSE A 1 MET SELENOMETHIONINE MODRES 2GI3 MSE A 74 MET SELENOMETHIONINE MODRES 2GI3 MSE A 98 MET SELENOMETHIONINE MODRES 2GI3 MSE A 116 MET SELENOMETHIONINE MODRES 2GI3 MSE A 153 MET SELENOMETHIONINE MODRES 2GI3 MSE A 214 MET SELENOMETHIONINE MODRES 2GI3 MSE A 245 MET SELENOMETHIONINE MODRES 2GI3 MSE A 345 MET SELENOMETHIONINE MODRES 2GI3 MSE A 364 MET SELENOMETHIONINE MODRES 2GI3 MSE A 408 MET SELENOMETHIONINE MODRES 2GI3 MSE A 467 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 74 12 HET MSE A 98 12 HET MSE A 116 8 HET MSE A 153 8 HET MSE A 214 8 HET MSE A 245 8 HET MSE A 345 8 HET MSE A 364 8 HET MSE A 408 8 HET MSE A 467 8 HET ACT A 476 4 HET ACT A 477 4 HET ACT A 478 4 HET MPD A 479 11 HET MPD A 480 11 HET MPD A 481 8 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 ACT 3(C2 H3 O2 1-) FORMUL 5 MPD 3(C6 H14 O2) FORMUL 8 HOH *339(H2 O) HELIX 1 1 ASP A 5 LEU A 9 5 5 HELIX 2 2 THR A 10 LEU A 15 1 6 HELIX 3 3 SER A 18 GLU A 23 1 6 HELIX 4 4 LYS A 24 LYS A 41 1 18 HELIX 5 5 SER A 80 GLU A 84 5 5 HELIX 6 6 ALA A 92 GLY A 102 1 11 HELIX 7 7 ASP A 112 MSE A 116 5 5 HELIX 8 8 SER A 142 ALA A 151 1 10 HELIX 9 9 VAL A 166 GLY A 174 1 9 HELIX 10 10 THR A 206 SER A 218 1 13 HELIX 11 11 GLU A 252 HIS A 256 5 5 HELIX 12 12 GLU A 259 LEU A 276 1 18 HELIX 13 13 HIS A 287 LYS A 289 5 3 HELIX 14 14 TYR A 290 SER A 305 1 16 HELIX 15 15 GLY A 335 TYR A 381 1 47 HELIX 16 16 ASP A 401 LEU A 407 1 7 HELIX 17 17 THR A 412 GLY A 419 1 8 HELIX 18 18 ALA A 445 SER A 460 1 16 SHEET 1 A11 PHE A 43 VAL A 46 0 SHEET 2 A11 VAL A 104 ALA A 109 -1 O LYS A 108 N ILE A 44 SHEET 3 A11 PRO A 62 LYS A 66 1 N VAL A 63 O VAL A 104 SHEET 4 A11 ALA A 156 ASP A 161 1 O LEU A 158 N LYS A 66 SHEET 5 A11 GLN A 199 THR A 204 -1 O ILE A 203 N ALA A 157 SHEET 6 A11 VAL A 176 LYS A 179 -1 N VAL A 176 O THR A 204 SHEET 7 A11 ALA A 422 SER A 430 -1 O ALA A 422 N LYS A 179 SHEET 8 A11 LEU A 433 ILE A 440 -1 O LEU A 433 N SER A 430 SHEET 9 A11 ALA A 383 PRO A 387 -1 N THR A 386 O GLN A 438 SHEET 10 A11 LYS A 246 PRO A 250 1 N ALA A 248 O LEU A 385 SHEET 11 A11 LYS A 279 VAL A 283 1 O LYS A 279 N PHE A 247 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C GLY A 73 N MSE A 74 1555 1555 1.32 LINK C MSE A 74 N ARG A 75 1555 1555 1.31 LINK C LYS A 97 N MSE A 98 1555 1555 1.34 LINK C MSE A 98 N LYS A 99 1555 1555 1.33 LINK C ALA A 115 N MSE A 116 1555 1555 1.32 LINK C MSE A 116 N GLY A 117 1555 1555 1.33 LINK C GLY A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N VAL A 154 1555 1555 1.34 LINK C LEU A 213 N MSE A 214 1555 1555 1.34 LINK C MSE A 214 N GLU A 215 1555 1555 1.33 LINK C GLY A 244 N MSE A 245 1555 1555 1.34 LINK C MSE A 245 N LYS A 246 1555 1555 1.32 LINK C ILE A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N ILE A 346 1555 1555 1.33 LINK C ALA A 363 N MSE A 364 1555 1555 1.33 LINK C MSE A 364 N LYS A 365 1555 1555 1.33 LINK C LEU A 407 N MSE A 408 1555 1555 1.33 LINK C MSE A 408 N ASP A 409 1555 1555 1.33 LINK C GLY A 466 N MSE A 467 1555 1555 1.33 LINK C MSE A 467 N PHE A 468 1555 1555 1.33 CISPEP 1 GLY A 140 SER A 141 0 1.73 SITE 1 AC1 2 GLY A 419 ARG A 443 SITE 1 AC2 4 LYS A 57 ILE A 212 MPD A 481 HOH A 780 SITE 1 AC3 9 ARG A 230 SER A 379 GLN A 380 TYR A 381 SITE 2 AC3 9 ASP A 382 ARG A 442 LYS A 448 HOH A 627 SITE 3 AC3 9 HOH A 761 SITE 1 AC4 4 ARG A 122 THR A 350 LYS A 400 HOH A 742 SITE 1 AC5 6 LYS A 57 PHE A 58 GLU A 215 LEU A 235 SITE 2 AC5 6 ACT A 478 HOH A 779 CRYST1 131.776 131.776 61.987 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007590 0.004380 0.000000 0.00000 SCALE2 0.000000 0.008760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016130 0.00000