data_2GIB # _entry.id 2GIB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GIB pdb_00002gib 10.2210/pdb2gib/pdb RCSB RCSB037153 ? ? WWPDB D_1000037153 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GIB _pdbx_database_status.recvd_initial_deposition_date 2006-03-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yu, I.M.' 1 'Oldham, M.L.' 2 'Zhang, J.' 3 'Chen, J.' 4 # _citation.id primary _citation.title ;Crystal structure of the severe acute respiratory syndrome (SARS) coronavirus nucleocapsid protein dimerization domain reveals evolutionary linkage between corona- and arteriviridae. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 17134 _citation.page_last 17139 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16627473 _citation.pdbx_database_id_DOI 10.1074/jbc.M602107200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yu, I.M.' 1 ? primary 'Oldham, M.L.' 2 ? primary 'Zhang, J.' 3 ? primary 'Chen, J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleocapsid protein' 11554.877 2 ? ? 'dimerization domain (residues 270-370)' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 212 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'N structural protein, NC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SANVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQF KDNVILLNKHIDAYKTFPPTEPK ; _entity_poly.pdbx_seq_one_letter_code_can ;SANVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQF KDNVILLNKHIDAYKTFPPTEPK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 ASN n 1 4 VAL n 1 5 THR n 1 6 GLN n 1 7 ALA n 1 8 PHE n 1 9 GLY n 1 10 ARG n 1 11 ARG n 1 12 GLY n 1 13 PRO n 1 14 GLU n 1 15 GLN n 1 16 THR n 1 17 GLN n 1 18 GLY n 1 19 ASN n 1 20 PHE n 1 21 GLY n 1 22 ASP n 1 23 GLN n 1 24 ASP n 1 25 LEU n 1 26 ILE n 1 27 ARG n 1 28 GLN n 1 29 GLY n 1 30 THR n 1 31 ASP n 1 32 TYR n 1 33 LYS n 1 34 HIS n 1 35 TRP n 1 36 PRO n 1 37 GLN n 1 38 ILE n 1 39 ALA n 1 40 GLN n 1 41 PHE n 1 42 ALA n 1 43 PRO n 1 44 SER n 1 45 ALA n 1 46 SER n 1 47 ALA n 1 48 PHE n 1 49 PHE n 1 50 GLY n 1 51 MET n 1 52 SER n 1 53 ARG n 1 54 ILE n 1 55 GLY n 1 56 MET n 1 57 GLU n 1 58 VAL n 1 59 THR n 1 60 PRO n 1 61 SER n 1 62 GLY n 1 63 THR n 1 64 TRP n 1 65 LEU n 1 66 THR n 1 67 TYR n 1 68 HIS n 1 69 GLY n 1 70 ALA n 1 71 ILE n 1 72 LYS n 1 73 LEU n 1 74 ASP n 1 75 ASP n 1 76 LYS n 1 77 ASP n 1 78 PRO n 1 79 GLN n 1 80 PHE n 1 81 LYS n 1 82 ASP n 1 83 ASN n 1 84 VAL n 1 85 ILE n 1 86 LEU n 1 87 LEU n 1 88 ASN n 1 89 LYS n 1 90 HIS n 1 91 ILE n 1 92 ASP n 1 93 ALA n 1 94 TYR n 1 95 LYS n 1 96 THR n 1 97 PHE n 1 98 PRO n 1 99 PRO n 1 100 THR n 1 101 GLU n 1 102 PRO n 1 103 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Coronavirus _entity_src_gen.pdbx_gene_src_gene N _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SARS coronavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 227859 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 268 ? ? ? A . n A 1 2 ALA 2 269 ? ? ? A . n A 1 3 ASN 3 270 270 ASN ASN A . n A 1 4 VAL 4 271 271 VAL VAL A . n A 1 5 THR 5 272 272 THR THR A . n A 1 6 GLN 6 273 273 GLN GLN A . n A 1 7 ALA 7 274 274 ALA ALA A . n A 1 8 PHE 8 275 275 PHE PHE A . n A 1 9 GLY 9 276 276 GLY GLY A . n A 1 10 ARG 10 277 277 ARG ARG A . n A 1 11 ARG 11 278 278 ARG ARG A . n A 1 12 GLY 12 279 279 GLY GLY A . n A 1 13 PRO 13 280 280 PRO PRO A . n A 1 14 GLU 14 281 281 GLU GLU A . n A 1 15 GLN 15 282 282 GLN GLN A . n A 1 16 THR 16 283 283 THR THR A . n A 1 17 GLN 17 284 284 GLN GLN A . n A 1 18 GLY 18 285 285 GLY GLY A . n A 1 19 ASN 19 286 286 ASN ASN A . n A 1 20 PHE 20 287 287 PHE PHE A . n A 1 21 GLY 21 288 288 GLY GLY A . n A 1 22 ASP 22 289 289 ASP ASP A . n A 1 23 GLN 23 290 290 GLN GLN A . n A 1 24 ASP 24 291 291 ASP ASP A . n A 1 25 LEU 25 292 292 LEU LEU A . n A 1 26 ILE 26 293 293 ILE ILE A . n A 1 27 ARG 27 294 294 ARG ALA A . n A 1 28 GLN 28 295 295 GLN GLN A . n A 1 29 GLY 29 296 296 GLY GLY A . n A 1 30 THR 30 297 297 THR THR A . n A 1 31 ASP 31 298 298 ASP ASP A . n A 1 32 TYR 32 299 299 TYR TYR A . n A 1 33 LYS 33 300 300 LYS ALA A . n A 1 34 HIS 34 301 301 HIS HIS A . n A 1 35 TRP 35 302 302 TRP TRP A . n A 1 36 PRO 36 303 303 PRO PRO A . n A 1 37 GLN 37 304 304 GLN GLN A . n A 1 38 ILE 38 305 305 ILE ILE A . n A 1 39 ALA 39 306 306 ALA ALA A . n A 1 40 GLN 40 307 307 GLN GLN A . n A 1 41 PHE 41 308 308 PHE PHE A . n A 1 42 ALA 42 309 309 ALA ALA A . n A 1 43 PRO 43 310 310 PRO PRO A . n A 1 44 SER 44 311 311 SER SER A . n A 1 45 ALA 45 312 312 ALA ALA A . n A 1 46 SER 46 313 313 SER SER A . n A 1 47 ALA 47 314 314 ALA ALA A . n A 1 48 PHE 48 315 315 PHE PHE A . n A 1 49 PHE 49 316 316 PHE PHE A . n A 1 50 GLY 50 317 317 GLY GLY A . n A 1 51 MET 51 318 318 MET MET A . n A 1 52 SER 52 319 319 SER SER A . n A 1 53 ARG 53 320 320 ARG ARG A . n A 1 54 ILE 54 321 321 ILE ILE A . n A 1 55 GLY 55 322 322 GLY GLY A . n A 1 56 MET 56 323 323 MET MET A . n A 1 57 GLU 57 324 324 GLU GLU A . n A 1 58 VAL 58 325 325 VAL VAL A . n A 1 59 THR 59 326 326 THR THR A . n A 1 60 PRO 60 327 327 PRO PRO A . n A 1 61 SER 61 328 328 SER SER A . n A 1 62 GLY 62 329 329 GLY GLY A . n A 1 63 THR 63 330 330 THR THR A . n A 1 64 TRP 64 331 331 TRP TRP A . n A 1 65 LEU 65 332 332 LEU LEU A . n A 1 66 THR 66 333 333 THR THR A . n A 1 67 TYR 67 334 334 TYR TYR A . n A 1 68 HIS 68 335 335 HIS HIS A . n A 1 69 GLY 69 336 336 GLY GLY A . n A 1 70 ALA 70 337 337 ALA ALA A . n A 1 71 ILE 71 338 338 ILE ILE A . n A 1 72 LYS 72 339 339 LYS LYS A . n A 1 73 LEU 73 340 340 LEU LEU A . n A 1 74 ASP 74 341 341 ASP ASP A . n A 1 75 ASP 75 342 342 ASP ASP A . n A 1 76 LYS 76 343 343 LYS LYS A . n A 1 77 ASP 77 344 344 ASP ASP A . n A 1 78 PRO 78 345 345 PRO PRO A . n A 1 79 GLN 79 346 346 GLN GLN A . n A 1 80 PHE 80 347 347 PHE PHE A . n A 1 81 LYS 81 348 348 LYS LYS A . n A 1 82 ASP 82 349 349 ASP ASP A . n A 1 83 ASN 83 350 350 ASN ASN A . n A 1 84 VAL 84 351 351 VAL VAL A . n A 1 85 ILE 85 352 352 ILE ILE A . n A 1 86 LEU 86 353 353 LEU LEU A . n A 1 87 LEU 87 354 354 LEU LEU A . n A 1 88 ASN 88 355 355 ASN ASN A . n A 1 89 LYS 89 356 356 LYS LYS A . n A 1 90 HIS 90 357 357 HIS HIS A . n A 1 91 ILE 91 358 358 ILE ILE A . n A 1 92 ASP 92 359 359 ASP ASP A . n A 1 93 ALA 93 360 360 ALA ALA A . n A 1 94 TYR 94 361 361 TYR TYR A . n A 1 95 LYS 95 362 362 LYS LYS A . n A 1 96 THR 96 363 363 THR THR A . n A 1 97 PHE 97 364 364 PHE PHE A . n A 1 98 PRO 98 365 365 PRO PRO A . n A 1 99 PRO 99 366 366 PRO ALA A . n A 1 100 THR 100 367 ? ? ? A . n A 1 101 GLU 101 368 ? ? ? A . n A 1 102 PRO 102 369 ? ? ? A . n A 1 103 LYS 103 370 ? ? ? A . n B 1 1 SER 1 268 ? ? ? B . n B 1 2 ALA 2 269 ? ? ? B . n B 1 3 ASN 3 270 ? ? ? B . n B 1 4 VAL 4 271 ? ? ? B . n B 1 5 THR 5 272 ? ? ? B . n B 1 6 GLN 6 273 ? ? ? B . n B 1 7 ALA 7 274 274 ALA ALA B . n B 1 8 PHE 8 275 275 PHE ALA B . n B 1 9 GLY 9 276 276 GLY GLY B . n B 1 10 ARG 10 277 277 ARG ALA B . n B 1 11 ARG 11 278 278 ARG ARG B . n B 1 12 GLY 12 279 279 GLY GLY B . n B 1 13 PRO 13 280 280 PRO PRO B . n B 1 14 GLU 14 281 281 GLU GLU B . n B 1 15 GLN 15 282 282 GLN GLN B . n B 1 16 THR 16 283 283 THR THR B . n B 1 17 GLN 17 284 284 GLN GLN B . n B 1 18 GLY 18 285 285 GLY GLY B . n B 1 19 ASN 19 286 286 ASN ASN B . n B 1 20 PHE 20 287 287 PHE PHE B . n B 1 21 GLY 21 288 288 GLY GLY B . n B 1 22 ASP 22 289 289 ASP ASP B . n B 1 23 GLN 23 290 290 GLN GLN B . n B 1 24 ASP 24 291 291 ASP ASP B . n B 1 25 LEU 25 292 292 LEU LEU B . n B 1 26 ILE 26 293 293 ILE ILE B . n B 1 27 ARG 27 294 294 ARG ARG B . n B 1 28 GLN 28 295 295 GLN GLN B . n B 1 29 GLY 29 296 296 GLY GLY B . n B 1 30 THR 30 297 297 THR THR B . n B 1 31 ASP 31 298 298 ASP ASP B . n B 1 32 TYR 32 299 299 TYR TYR B . n B 1 33 LYS 33 300 300 LYS ALA B . n B 1 34 HIS 34 301 301 HIS HIS B . n B 1 35 TRP 35 302 302 TRP TRP B . n B 1 36 PRO 36 303 303 PRO PRO B . n B 1 37 GLN 37 304 304 GLN GLN B . n B 1 38 ILE 38 305 305 ILE ILE B . n B 1 39 ALA 39 306 306 ALA ALA B . n B 1 40 GLN 40 307 307 GLN GLN B . n B 1 41 PHE 41 308 308 PHE PHE B . n B 1 42 ALA 42 309 309 ALA ALA B . n B 1 43 PRO 43 310 310 PRO PRO B . n B 1 44 SER 44 311 311 SER SER B . n B 1 45 ALA 45 312 312 ALA ALA B . n B 1 46 SER 46 313 313 SER SER B . n B 1 47 ALA 47 314 314 ALA ALA B . n B 1 48 PHE 48 315 315 PHE PHE B . n B 1 49 PHE 49 316 316 PHE PHE B . n B 1 50 GLY 50 317 317 GLY GLY B . n B 1 51 MET 51 318 318 MET MET B . n B 1 52 SER 52 319 319 SER SER B . n B 1 53 ARG 53 320 320 ARG ARG B . n B 1 54 ILE 54 321 321 ILE ILE B . n B 1 55 GLY 55 322 322 GLY GLY B . n B 1 56 MET 56 323 323 MET MET B . n B 1 57 GLU 57 324 324 GLU GLU B . n B 1 58 VAL 58 325 325 VAL VAL B . n B 1 59 THR 59 326 326 THR THR B . n B 1 60 PRO 60 327 327 PRO PRO B . n B 1 61 SER 61 328 328 SER SER B . n B 1 62 GLY 62 329 329 GLY GLY B . n B 1 63 THR 63 330 330 THR THR B . n B 1 64 TRP 64 331 331 TRP TRP B . n B 1 65 LEU 65 332 332 LEU LEU B . n B 1 66 THR 66 333 333 THR THR B . n B 1 67 TYR 67 334 334 TYR TYR B . n B 1 68 HIS 68 335 335 HIS HIS B . n B 1 69 GLY 69 336 336 GLY GLY B . n B 1 70 ALA 70 337 337 ALA ALA B . n B 1 71 ILE 71 338 338 ILE ILE B . n B 1 72 LYS 72 339 339 LYS LYS B . n B 1 73 LEU 73 340 340 LEU LEU B . n B 1 74 ASP 74 341 341 ASP ASP B . n B 1 75 ASP 75 342 342 ASP ASP B . n B 1 76 LYS 76 343 343 LYS LYS B . n B 1 77 ASP 77 344 344 ASP ASP B . n B 1 78 PRO 78 345 345 PRO PRO B . n B 1 79 GLN 79 346 346 GLN GLN B . n B 1 80 PHE 80 347 347 PHE PHE B . n B 1 81 LYS 81 348 348 LYS ALA B . n B 1 82 ASP 82 349 349 ASP ASP B . n B 1 83 ASN 83 350 350 ASN ASN B . n B 1 84 VAL 84 351 351 VAL VAL B . n B 1 85 ILE 85 352 352 ILE ILE B . n B 1 86 LEU 86 353 353 LEU LEU B . n B 1 87 LEU 87 354 354 LEU LEU B . n B 1 88 ASN 88 355 355 ASN ASN B . n B 1 89 LYS 89 356 356 LYS LYS B . n B 1 90 HIS 90 357 357 HIS HIS B . n B 1 91 ILE 91 358 358 ILE ILE B . n B 1 92 ASP 92 359 359 ASP ASP B . n B 1 93 ALA 93 360 360 ALA ALA B . n B 1 94 TYR 94 361 361 TYR TYR B . n B 1 95 LYS 95 362 362 LYS LYS B . n B 1 96 THR 96 363 363 THR THR B . n B 1 97 PHE 97 364 364 PHE PHE B . n B 1 98 PRO 98 365 365 PRO PRO B . n B 1 99 PRO 99 366 366 PRO PRO B . n B 1 100 THR 100 367 367 THR THR B . n B 1 101 GLU 101 368 368 GLU GLU B . n B 1 102 PRO 102 369 369 PRO PRO B . n B 1 103 LYS 103 370 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 371 1 SO4 SUL A . D 3 HOH 1 1 1 HOH HOH A . D 3 HOH 2 2 2 HOH HOH A . D 3 HOH 3 7 7 HOH HOH A . D 3 HOH 4 8 8 HOH HOH A . D 3 HOH 5 10 10 HOH HOH A . D 3 HOH 6 16 16 HOH HOH A . D 3 HOH 7 17 17 HOH HOH A . D 3 HOH 8 19 19 HOH HOH A . D 3 HOH 9 20 20 HOH HOH A . D 3 HOH 10 22 22 HOH HOH A . D 3 HOH 11 23 23 HOH HOH A . D 3 HOH 12 26 26 HOH HOH A . D 3 HOH 13 29 29 HOH HOH A . D 3 HOH 14 32 32 HOH HOH A . D 3 HOH 15 33 33 HOH HOH A . D 3 HOH 16 37 37 HOH HOH A . D 3 HOH 17 38 38 HOH HOH A . D 3 HOH 18 39 39 HOH HOH A . D 3 HOH 19 41 41 HOH HOH A . D 3 HOH 20 42 42 HOH HOH A . D 3 HOH 21 44 44 HOH HOH A . D 3 HOH 22 47 47 HOH HOH A . D 3 HOH 23 49 49 HOH HOH A . D 3 HOH 24 50 50 HOH HOH A . D 3 HOH 25 52 52 HOH HOH A . D 3 HOH 26 54 54 HOH HOH A . D 3 HOH 27 55 55 HOH HOH A . D 3 HOH 28 57 57 HOH HOH A . D 3 HOH 29 59 59 HOH HOH A . D 3 HOH 30 63 63 HOH HOH A . D 3 HOH 31 64 64 HOH HOH A . D 3 HOH 32 65 65 HOH HOH A . D 3 HOH 33 68 68 HOH HOH A . D 3 HOH 34 69 69 HOH HOH A . D 3 HOH 35 72 72 HOH HOH A . D 3 HOH 36 73 73 HOH HOH A . D 3 HOH 37 74 74 HOH HOH A . D 3 HOH 38 77 77 HOH HOH A . D 3 HOH 39 80 80 HOH HOH A . D 3 HOH 40 81 81 HOH HOH A . D 3 HOH 41 83 83 HOH HOH A . D 3 HOH 42 85 85 HOH HOH A . D 3 HOH 43 87 87 HOH HOH A . D 3 HOH 44 88 88 HOH HOH A . D 3 HOH 45 89 89 HOH HOH A . D 3 HOH 46 90 90 HOH HOH A . D 3 HOH 47 93 93 HOH HOH A . D 3 HOH 48 96 96 HOH HOH A . D 3 HOH 49 97 97 HOH HOH A . D 3 HOH 50 98 98 HOH HOH A . D 3 HOH 51 102 102 HOH HOH A . D 3 HOH 52 107 107 HOH HOH A . D 3 HOH 53 109 109 HOH HOH A . D 3 HOH 54 110 110 HOH HOH A . D 3 HOH 55 111 111 HOH HOH A . D 3 HOH 56 112 112 HOH HOH A . D 3 HOH 57 113 113 HOH HOH A . D 3 HOH 58 114 114 HOH HOH A . D 3 HOH 59 116 116 HOH HOH A . D 3 HOH 60 117 117 HOH HOH A . D 3 HOH 61 119 119 HOH HOH A . D 3 HOH 62 120 120 HOH HOH A . D 3 HOH 63 121 121 HOH HOH A . D 3 HOH 64 122 122 HOH HOH A . D 3 HOH 65 124 124 HOH HOH A . D 3 HOH 66 127 127 HOH HOH A . D 3 HOH 67 128 128 HOH HOH A . D 3 HOH 68 129 129 HOH HOH A . D 3 HOH 69 130 130 HOH HOH A . D 3 HOH 70 131 131 HOH HOH A . D 3 HOH 71 133 133 HOH HOH A . D 3 HOH 72 141 141 HOH HOH A . D 3 HOH 73 142 142 HOH HOH A . D 3 HOH 74 147 147 HOH HOH A . D 3 HOH 75 154 154 HOH HOH A . D 3 HOH 76 155 155 HOH HOH A . D 3 HOH 77 159 159 HOH HOH A . D 3 HOH 78 160 160 HOH HOH A . D 3 HOH 79 161 161 HOH HOH A . D 3 HOH 80 167 167 HOH HOH A . D 3 HOH 81 173 173 HOH HOH A . D 3 HOH 82 174 174 HOH HOH A . D 3 HOH 83 176 176 HOH HOH A . D 3 HOH 84 185 185 HOH HOH A . D 3 HOH 85 191 191 HOH HOH A . D 3 HOH 86 192 192 HOH HOH A . D 3 HOH 87 195 195 HOH HOH A . D 3 HOH 88 197 197 HOH HOH A . D 3 HOH 89 201 201 HOH HOH A . D 3 HOH 90 202 202 HOH HOH A . D 3 HOH 91 203 203 HOH HOH A . D 3 HOH 92 204 204 HOH HOH A . D 3 HOH 93 205 205 HOH HOH A . D 3 HOH 94 207 207 HOH HOH A . D 3 HOH 95 209 209 HOH HOH A . D 3 HOH 96 210 210 HOH HOH A . D 3 HOH 97 211 211 HOH HOH A . D 3 HOH 98 214 214 HOH HOH A . D 3 HOH 99 215 215 HOH HOH A . D 3 HOH 100 216 216 HOH HOH A . D 3 HOH 101 217 217 HOH HOH A . D 3 HOH 102 218 218 HOH HOH A . D 3 HOH 103 219 219 HOH HOH A . D 3 HOH 104 220 220 HOH HOH A . D 3 HOH 105 222 222 HOH HOH A . D 3 HOH 106 223 223 HOH HOH A . D 3 HOH 107 224 224 HOH HOH A . D 3 HOH 108 226 226 HOH HOH A . D 3 HOH 109 227 227 HOH HOH A . D 3 HOH 110 228 228 HOH HOH A . D 3 HOH 111 229 229 HOH HOH A . E 3 HOH 1 3 3 HOH HOH B . E 3 HOH 2 4 4 HOH HOH B . E 3 HOH 3 5 5 HOH HOH B . E 3 HOH 4 9 9 HOH HOH B . E 3 HOH 5 11 11 HOH HOH B . E 3 HOH 6 12 12 HOH HOH B . E 3 HOH 7 13 13 HOH HOH B . E 3 HOH 8 14 14 HOH HOH B . E 3 HOH 9 15 15 HOH HOH B . E 3 HOH 10 18 18 HOH HOH B . E 3 HOH 11 21 21 HOH HOH B . E 3 HOH 12 25 25 HOH HOH B . E 3 HOH 13 27 27 HOH HOH B . E 3 HOH 14 28 28 HOH HOH B . E 3 HOH 15 30 30 HOH HOH B . E 3 HOH 16 31 31 HOH HOH B . E 3 HOH 17 34 34 HOH HOH B . E 3 HOH 18 36 36 HOH HOH B . E 3 HOH 19 40 40 HOH HOH B . E 3 HOH 20 43 43 HOH HOH B . E 3 HOH 21 45 45 HOH HOH B . E 3 HOH 22 46 46 HOH HOH B . E 3 HOH 23 48 48 HOH HOH B . E 3 HOH 24 51 51 HOH HOH B . E 3 HOH 25 53 53 HOH HOH B . E 3 HOH 26 56 56 HOH HOH B . E 3 HOH 27 58 58 HOH HOH B . E 3 HOH 28 60 60 HOH HOH B . E 3 HOH 29 61 61 HOH HOH B . E 3 HOH 30 62 62 HOH HOH B . E 3 HOH 31 66 66 HOH HOH B . E 3 HOH 32 67 67 HOH HOH B . E 3 HOH 33 70 70 HOH HOH B . E 3 HOH 34 75 75 HOH HOH B . E 3 HOH 35 76 76 HOH HOH B . E 3 HOH 36 78 78 HOH HOH B . E 3 HOH 37 79 79 HOH HOH B . E 3 HOH 38 82 82 HOH HOH B . E 3 HOH 39 84 84 HOH HOH B . E 3 HOH 40 86 86 HOH HOH B . E 3 HOH 41 91 91 HOH HOH B . E 3 HOH 42 92 92 HOH HOH B . E 3 HOH 43 94 94 HOH HOH B . E 3 HOH 44 99 99 HOH HOH B . E 3 HOH 45 100 100 HOH HOH B . E 3 HOH 46 101 101 HOH HOH B . E 3 HOH 47 103 103 HOH HOH B . E 3 HOH 48 104 104 HOH HOH B . E 3 HOH 49 105 105 HOH HOH B . E 3 HOH 50 106 106 HOH HOH B . E 3 HOH 51 108 108 HOH HOH B . E 3 HOH 52 115 115 HOH HOH B . E 3 HOH 53 118 118 HOH HOH B . E 3 HOH 54 123 123 HOH HOH B . E 3 HOH 55 126 126 HOH HOH B . E 3 HOH 56 132 132 HOH HOH B . E 3 HOH 57 134 134 HOH HOH B . E 3 HOH 58 135 135 HOH HOH B . E 3 HOH 59 136 136 HOH HOH B . E 3 HOH 60 138 138 HOH HOH B . E 3 HOH 61 139 139 HOH HOH B . E 3 HOH 62 140 140 HOH HOH B . E 3 HOH 63 145 145 HOH HOH B . E 3 HOH 64 149 149 HOH HOH B . E 3 HOH 65 150 150 HOH HOH B . E 3 HOH 66 151 151 HOH HOH B . E 3 HOH 67 152 152 HOH HOH B . E 3 HOH 68 153 153 HOH HOH B . E 3 HOH 69 158 158 HOH HOH B . E 3 HOH 70 162 162 HOH HOH B . E 3 HOH 71 163 163 HOH HOH B . E 3 HOH 72 164 164 HOH HOH B . E 3 HOH 73 165 165 HOH HOH B . E 3 HOH 74 166 166 HOH HOH B . E 3 HOH 75 168 168 HOH HOH B . E 3 HOH 76 169 169 HOH HOH B . E 3 HOH 77 170 170 HOH HOH B . E 3 HOH 78 171 171 HOH HOH B . E 3 HOH 79 172 172 HOH HOH B . E 3 HOH 80 175 175 HOH HOH B . E 3 HOH 81 177 177 HOH HOH B . E 3 HOH 82 178 178 HOH HOH B . E 3 HOH 83 180 180 HOH HOH B . E 3 HOH 84 181 181 HOH HOH B . E 3 HOH 85 182 182 HOH HOH B . E 3 HOH 86 183 183 HOH HOH B . E 3 HOH 87 186 186 HOH HOH B . E 3 HOH 88 187 187 HOH HOH B . E 3 HOH 89 189 189 HOH HOH B . E 3 HOH 90 190 190 HOH HOH B . E 3 HOH 91 193 193 HOH HOH B . E 3 HOH 92 196 196 HOH HOH B . E 3 HOH 93 198 198 HOH HOH B . E 3 HOH 94 199 199 HOH HOH B . E 3 HOH 95 200 200 HOH HOH B . E 3 HOH 96 206 206 HOH HOH B . E 3 HOH 97 208 208 HOH HOH B . E 3 HOH 98 212 212 HOH HOH B . E 3 HOH 99 213 213 HOH HOH B . E 3 HOH 100 221 221 HOH HOH B . E 3 HOH 101 225 225 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 294 ? CG ? A ARG 27 CG 2 1 Y 1 A ARG 294 ? CD ? A ARG 27 CD 3 1 Y 1 A ARG 294 ? NE ? A ARG 27 NE 4 1 Y 1 A ARG 294 ? CZ ? A ARG 27 CZ 5 1 Y 1 A ARG 294 ? NH1 ? A ARG 27 NH1 6 1 Y 1 A ARG 294 ? NH2 ? A ARG 27 NH2 7 1 Y 1 A LYS 300 ? CG ? A LYS 33 CG 8 1 Y 1 A LYS 300 ? CD ? A LYS 33 CD 9 1 Y 1 A LYS 300 ? CE ? A LYS 33 CE 10 1 Y 1 A LYS 300 ? NZ ? A LYS 33 NZ 11 1 Y 1 A PRO 366 ? CG ? A PRO 99 CG 12 1 Y 1 A PRO 366 ? CD ? A PRO 99 CD 13 1 Y 1 B PHE 275 ? CG ? B PHE 8 CG 14 1 Y 1 B PHE 275 ? CD1 ? B PHE 8 CD1 15 1 Y 1 B PHE 275 ? CD2 ? B PHE 8 CD2 16 1 Y 1 B PHE 275 ? CE1 ? B PHE 8 CE1 17 1 Y 1 B PHE 275 ? CE2 ? B PHE 8 CE2 18 1 Y 1 B PHE 275 ? CZ ? B PHE 8 CZ 19 1 Y 1 B ARG 277 ? CG ? B ARG 10 CG 20 1 Y 1 B ARG 277 ? CD ? B ARG 10 CD 21 1 Y 1 B ARG 277 ? NE ? B ARG 10 NE 22 1 Y 1 B ARG 277 ? CZ ? B ARG 10 CZ 23 1 Y 1 B ARG 277 ? NH1 ? B ARG 10 NH1 24 1 Y 1 B ARG 277 ? NH2 ? B ARG 10 NH2 25 1 Y 1 B LYS 300 ? CG ? B LYS 33 CG 26 1 Y 1 B LYS 300 ? CD ? B LYS 33 CD 27 1 Y 1 B LYS 300 ? CE ? B LYS 33 CE 28 1 Y 1 B LYS 300 ? NZ ? B LYS 33 NZ 29 1 Y 1 B LYS 348 ? CG ? B LYS 81 CG 30 1 Y 1 B LYS 348 ? CD ? B LYS 81 CD 31 1 Y 1 B LYS 348 ? CE ? B LYS 81 CE 32 1 Y 1 B LYS 348 ? NZ ? B LYS 81 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 ADSC 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 2GIB _cell.length_a 124.163 _cell.length_b 50.490 _cell.length_c 41.479 _cell.angle_alpha 90.00 _cell.angle_beta 108.92 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GIB _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2GIB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_percent_sol 54.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.5 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;30-33% Pentaerythritol ethoxylate 15/4 EO/OH, 50 mM Ammonium sulfate, 50 mM Bis-Tris , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.5K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-11-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97929 1.0 2 0.97940 1.0 3 0.94285 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97929, 0.97940, 0.94285' # _reflns.entry_id 2GIB _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.93 _reflns.d_resolution_high 1.75 _reflns.number_obs 23088 _reflns.number_all 23293 _reflns.percent_possible_obs 99.12 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.795 _reflns_shell.percent_possible_all 96.12 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2GIB _refine.ls_number_reflns_obs 23088 _refine.ls_number_reflns_all 23293 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.93 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 99.12 _refine.ls_R_factor_obs 0.18951 _refine.ls_R_factor_all 0.18951 _refine.ls_R_factor_R_work 0.18726 _refine.ls_R_factor_R_free 0.23451 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1166 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.914 _refine.B_iso_mean 17.965 _refine.aniso_B[1][1] -0.77 _refine.aniso_B[2][2] -0.76 _refine.aniso_B[3][3] 1.24 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.47 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.160 _refine.pdbx_overall_ESU_R_Free 0.114 _refine.overall_SU_ML 0.069 _refine.overall_SU_B 4.535 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1510 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 1727 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 30.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1560 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.674 1.931 ? 2121 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.036 5.000 ? 191 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.360 24.744 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.438 15.000 ? 233 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.965 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 216 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1241 'X-RAY DIFFRACTION' ? r_nbd_refined 0.230 0.200 ? 720 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.313 0.200 ? 1067 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.223 0.200 ? 169 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.538 0.200 ? 63 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.419 0.200 ? 30 'X-RAY DIFFRACTION' ? r_mcbond_it 1.627 1.500 ? 987 'X-RAY DIFFRACTION' ? r_mcangle_it 2.177 2.000 ? 1539 'X-RAY DIFFRACTION' ? r_scbond_it 3.124 3.000 ? 662 'X-RAY DIFFRACTION' ? r_scangle_it 3.912 4.500 ? 582 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.142 3.000 ? 1649 'X-RAY DIFFRACTION' ? r_sphericity_free 7.765 3.000 ? 212 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.052 3.000 ? 1516 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.750 _refine_ls_shell.d_res_low 1.795 _refine_ls_shell.number_reflns_R_work 1649 _refine_ls_shell.R_factor_R_work 0.163 _refine_ls_shell.percent_reflns_obs 96.21 _refine_ls_shell.R_factor_R_free 0.28 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1649 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2GIB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2GIB _struct.title 'Crystal structure of the SARS coronavirus nucleocapsid protein dimerization domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GIB _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'SARS, nucleocapsid, dimer, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NCAP_CVHSA _struct_ref.pdbx_db_accession P59595 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 270 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GIB A 3 ? 103 ? P59595 270 ? 370 ? 270 370 2 1 2GIB B 3 ? 103 ? P59595 270 ? 370 ? 270 370 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GIB SER A 1 ? UNP P59595 ? ? 'cloning artifact' 268 1 1 2GIB ALA A 2 ? UNP P59595 ? ? 'cloning artifact' 269 2 2 2GIB SER B 1 ? UNP P59595 ? ? 'cloning artifact' 268 3 2 2GIB ALA B 2 ? UNP P59595 ? ? 'cloning artifact' 269 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4180 ? 1 MORE -27 ? 1 'SSA (A^2)' 10880 ? 2 'ABSA (A^2)' 9630 ? 2 MORE -93 ? 2 'SSA (A^2)' 20860 ? 3 'ABSA (A^2)' 9860 ? 3 MORE -68 ? 3 'SSA (A^2)' 20260 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1,2 A,B,C,D,E 3 1,3 A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 124.1630000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 110.7135319518 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 39.2379822394 # _struct_biol.id 1 _struct_biol.details 'The biologic assembly is a dimer as found in the asymmetric unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 3 ? GLY A 9 ? ASN A 270 GLY A 276 1 ? 7 HELX_P HELX_P2 2 ASP A 22 ? GLY A 29 ? ASP A 289 GLY A 296 1 ? 8 HELX_P HELX_P3 3 THR A 30 ? TYR A 32 ? THR A 297 TYR A 299 5 ? 3 HELX_P HELX_P4 4 HIS A 34 ? GLN A 40 ? HIS A 301 GLN A 307 1 ? 7 HELX_P HELX_P5 5 SER A 44 ? SER A 52 ? SER A 311 SER A 319 1 ? 9 HELX_P HELX_P6 6 GLN A 79 ? ILE A 91 ? GLN A 346 ILE A 358 1 ? 13 HELX_P HELX_P7 7 ASP A 92 ? PHE A 97 ? ASP A 359 PHE A 364 5 ? 6 HELX_P HELX_P8 8 ASP B 22 ? GLY B 29 ? ASP B 289 GLY B 296 1 ? 8 HELX_P HELX_P9 9 THR B 30 ? TYR B 32 ? THR B 297 TYR B 299 5 ? 3 HELX_P HELX_P10 10 HIS B 34 ? GLN B 40 ? HIS B 301 GLN B 307 1 ? 7 HELX_P HELX_P11 11 SER B 44 ? SER B 52 ? SER B 311 SER B 319 1 ? 9 HELX_P HELX_P12 12 GLN B 79 ? ILE B 91 ? GLN B 346 ILE B 358 1 ? 13 HELX_P HELX_P13 13 ASP B 92 ? PHE B 97 ? ASP B 359 PHE B 364 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 101 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 368 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 102 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 369 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.30 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 53 ? VAL A 58 ? ARG A 320 VAL A 325 A 2 THR A 63 ? LEU A 73 ? THR A 330 LEU A 340 A 3 GLY B 62 ? LYS B 72 ? GLY B 329 LYS B 339 A 4 ARG B 53 ? THR B 59 ? ARG B 320 THR B 326 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 53 ? N ARG A 320 O HIS A 68 ? O HIS A 335 A 2 3 N ILE A 71 ? N ILE A 338 O LEU B 65 ? O LEU B 332 A 3 4 O HIS B 68 ? O HIS B 335 N ARG B 53 ? N ARG B 320 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 371 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 371' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH D . ? HOH A 2 . ? 1_555 ? 2 AC1 8 HOH D . ? HOH A 2 . ? 2_655 ? 3 AC1 8 HOH D . ? HOH A 229 . ? 1_555 ? 4 AC1 8 HOH D . ? HOH A 229 . ? 2_655 ? 5 AC1 8 GLY A 9 ? GLY A 276 . ? 2_655 ? 6 AC1 8 GLY A 9 ? GLY A 276 . ? 1_555 ? 7 AC1 8 ARG A 10 ? ARG A 277 . ? 2_655 ? 8 AC1 8 ARG A 10 ? ARG A 277 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 116 ? ? O A HOH 228 ? ? 1.20 2 1 O B HOH 149 ? ? O B HOH 208 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 127 ? ? 1_555 O A HOH 219 ? ? 2_655 1.57 2 1 O A HOH 111 ? ? 1_555 O A HOH 111 ? ? 2_656 1.62 3 1 OE1 B GLU 368 ? ? 1_555 O B HOH 4 ? ? 4_555 1.94 4 1 OE2 B GLU 368 ? ? 1_555 O B HOH 4 ? ? 4_555 2.05 5 1 CD B GLU 368 ? ? 1_555 O B HOH 4 ? ? 4_555 2.12 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 371 ? C SO4 . 2 1 A HOH 229 ? D HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 268 ? A SER 1 2 1 Y 1 A ALA 269 ? A ALA 2 3 1 Y 1 A THR 367 ? A THR 100 4 1 Y 1 A GLU 368 ? A GLU 101 5 1 Y 1 A PRO 369 ? A PRO 102 6 1 Y 1 A LYS 370 ? A LYS 103 7 1 Y 1 B SER 268 ? B SER 1 8 1 Y 1 B ALA 269 ? B ALA 2 9 1 Y 1 B ASN 270 ? B ASN 3 10 1 Y 1 B VAL 271 ? B VAL 4 11 1 Y 1 B THR 272 ? B THR 5 12 1 Y 1 B GLN 273 ? B GLN 6 13 1 Y 1 B LYS 370 ? B LYS 103 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 SO4 S S N N 290 SO4 O1 O N N 291 SO4 O2 O N N 292 SO4 O3 O N N 293 SO4 O4 O N N 294 THR N N N N 295 THR CA C N S 296 THR C C N N 297 THR O O N N 298 THR CB C N R 299 THR OG1 O N N 300 THR CG2 C N N 301 THR OXT O N N 302 THR H H N N 303 THR H2 H N N 304 THR HA H N N 305 THR HB H N N 306 THR HG1 H N N 307 THR HG21 H N N 308 THR HG22 H N N 309 THR HG23 H N N 310 THR HXT H N N 311 TRP N N N N 312 TRP CA C N S 313 TRP C C N N 314 TRP O O N N 315 TRP CB C N N 316 TRP CG C Y N 317 TRP CD1 C Y N 318 TRP CD2 C Y N 319 TRP NE1 N Y N 320 TRP CE2 C Y N 321 TRP CE3 C Y N 322 TRP CZ2 C Y N 323 TRP CZ3 C Y N 324 TRP CH2 C Y N 325 TRP OXT O N N 326 TRP H H N N 327 TRP H2 H N N 328 TRP HA H N N 329 TRP HB2 H N N 330 TRP HB3 H N N 331 TRP HD1 H N N 332 TRP HE1 H N N 333 TRP HE3 H N N 334 TRP HZ2 H N N 335 TRP HZ3 H N N 336 TRP HH2 H N N 337 TRP HXT H N N 338 TYR N N N N 339 TYR CA C N S 340 TYR C C N N 341 TYR O O N N 342 TYR CB C N N 343 TYR CG C Y N 344 TYR CD1 C Y N 345 TYR CD2 C Y N 346 TYR CE1 C Y N 347 TYR CE2 C Y N 348 TYR CZ C Y N 349 TYR OH O N N 350 TYR OXT O N N 351 TYR H H N N 352 TYR H2 H N N 353 TYR HA H N N 354 TYR HB2 H N N 355 TYR HB3 H N N 356 TYR HD1 H N N 357 TYR HD2 H N N 358 TYR HE1 H N N 359 TYR HE2 H N N 360 TYR HH H N N 361 TYR HXT H N N 362 VAL N N N N 363 VAL CA C N S 364 VAL C C N N 365 VAL O O N N 366 VAL CB C N N 367 VAL CG1 C N N 368 VAL CG2 C N N 369 VAL OXT O N N 370 VAL H H N N 371 VAL H2 H N N 372 VAL HA H N N 373 VAL HB H N N 374 VAL HG11 H N N 375 VAL HG12 H N N 376 VAL HG13 H N N 377 VAL HG21 H N N 378 VAL HG22 H N N 379 VAL HG23 H N N 380 VAL HXT H N N 381 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 SO4 S O1 doub N N 277 SO4 S O2 doub N N 278 SO4 S O3 sing N N 279 SO4 S O4 sing N N 280 THR N CA sing N N 281 THR N H sing N N 282 THR N H2 sing N N 283 THR CA C sing N N 284 THR CA CB sing N N 285 THR CA HA sing N N 286 THR C O doub N N 287 THR C OXT sing N N 288 THR CB OG1 sing N N 289 THR CB CG2 sing N N 290 THR CB HB sing N N 291 THR OG1 HG1 sing N N 292 THR CG2 HG21 sing N N 293 THR CG2 HG22 sing N N 294 THR CG2 HG23 sing N N 295 THR OXT HXT sing N N 296 TRP N CA sing N N 297 TRP N H sing N N 298 TRP N H2 sing N N 299 TRP CA C sing N N 300 TRP CA CB sing N N 301 TRP CA HA sing N N 302 TRP C O doub N N 303 TRP C OXT sing N N 304 TRP CB CG sing N N 305 TRP CB HB2 sing N N 306 TRP CB HB3 sing N N 307 TRP CG CD1 doub Y N 308 TRP CG CD2 sing Y N 309 TRP CD1 NE1 sing Y N 310 TRP CD1 HD1 sing N N 311 TRP CD2 CE2 doub Y N 312 TRP CD2 CE3 sing Y N 313 TRP NE1 CE2 sing Y N 314 TRP NE1 HE1 sing N N 315 TRP CE2 CZ2 sing Y N 316 TRP CE3 CZ3 doub Y N 317 TRP CE3 HE3 sing N N 318 TRP CZ2 CH2 doub Y N 319 TRP CZ2 HZ2 sing N N 320 TRP CZ3 CH2 sing Y N 321 TRP CZ3 HZ3 sing N N 322 TRP CH2 HH2 sing N N 323 TRP OXT HXT sing N N 324 TYR N CA sing N N 325 TYR N H sing N N 326 TYR N H2 sing N N 327 TYR CA C sing N N 328 TYR CA CB sing N N 329 TYR CA HA sing N N 330 TYR C O doub N N 331 TYR C OXT sing N N 332 TYR CB CG sing N N 333 TYR CB HB2 sing N N 334 TYR CB HB3 sing N N 335 TYR CG CD1 doub Y N 336 TYR CG CD2 sing Y N 337 TYR CD1 CE1 sing Y N 338 TYR CD1 HD1 sing N N 339 TYR CD2 CE2 doub Y N 340 TYR CD2 HD2 sing N N 341 TYR CE1 CZ doub Y N 342 TYR CE1 HE1 sing N N 343 TYR CE2 CZ sing Y N 344 TYR CE2 HE2 sing N N 345 TYR CZ OH sing N N 346 TYR OH HH sing N N 347 TYR OXT HXT sing N N 348 VAL N CA sing N N 349 VAL N H sing N N 350 VAL N H2 sing N N 351 VAL CA C sing N N 352 VAL CA CB sing N N 353 VAL CA HA sing N N 354 VAL C O doub N N 355 VAL C OXT sing N N 356 VAL CB CG1 sing N N 357 VAL CB CG2 sing N N 358 VAL CB HB sing N N 359 VAL CG1 HG11 sing N N 360 VAL CG1 HG12 sing N N 361 VAL CG1 HG13 sing N N 362 VAL CG2 HG21 sing N N 363 VAL CG2 HG22 sing N N 364 VAL CG2 HG23 sing N N 365 VAL OXT HXT sing N N 366 # _atom_sites.entry_id 2GIB _atom_sites.fract_transf_matrix[1][1] 0.008054 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002761 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019806 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025486 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_