HEADER HYDROLASE/DNA 28-MAR-06 2GIJ TITLE Q138F HINCII BOUND TO COGNATE DNA GTTAAC AND CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*GP*C)-3'; COMPND 3 CHAIN: E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TYPE II RESTRICTION ENZYME HINCII; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: ENDONUCLEASE HINCII, R.HINCII; COMPND 9 EC: 3.1.21.4; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 5 ORGANISM_TAXID: 727; SOURCE 6 GENE: HINCIIR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ER2393; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCCR101HINCII.R KEYWDS PROTEIN DNA COMPLEX, INDIRECT READOUT, DNA INTERCALATION, KEYWDS 2 ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.C.HORTON,H.K.JOSHI REVDAT 6 14-FEB-24 2GIJ 1 REMARK REVDAT 5 20-OCT-21 2GIJ 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 2GIJ 1 VERSN REVDAT 3 27-MAR-07 2GIJ 1 TITLE COMPND SOURCE DBREF REVDAT 3 2 1 SEQADV REVDAT 2 29-AUG-06 2GIJ 1 JRNL REVDAT 1 18-JUL-06 2GIJ 0 JRNL AUTH H.K.JOSHI,C.ETZKORN,L.CHATWELL,J.BITINAITE,N.C.HORTON JRNL TITL ALTERATION OF SEQUENCE SPECIFICITY OF THE TYPE II JRNL TITL 2 RESTRICTION ENDONUCLEASE HINCII THROUGH AN INDIRECT READOUT JRNL TITL 3 MECHANISM. JRNL REF J.BIOL.CHEM. V. 281 23852 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16675462 JRNL DOI 10.1074/JBC.M512339200 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 40355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1977 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3865 REMARK 3 NUCLEIC ACID ATOMS : 568 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.190 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88556 REMARK 200 MONOCHROMATOR : 180 DEGREES, 1 DEGREE PER FRAME REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4K, 0.15 M NACL, 0.1 M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.88650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICAL ASSEMBLY OF ONE REMARK 300 PROTEIN DIMER AND ONE DUPLEX OF DNA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 23 REMARK 465 LYS A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 LEU A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 HIS A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 GLY A 34 REMARK 465 LYS B 19 REMARK 465 VAL B 20 REMARK 465 LYS B 21 REMARK 465 ARG B 22 REMARK 465 PRO B 23 REMARK 465 LYS B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 LEU B 28 REMARK 465 SER B 29 REMARK 465 GLY B 30 REMARK 465 HIS B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 465 GLY B 34 REMARK 465 GLU B 35 REMARK 465 PRO B 36 REMARK 465 LEU B 175 REMARK 465 ASN B 176 REMARK 465 LEU B 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASN A 48 CG OD1 ND2 REMARK 470 SER A 50 OG REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ILE A 142 CD1 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ASN A 176 CG OD1 ND2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 SER B 50 OG REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS B 78 CD CE NZ REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 LYS B 129 CD CE NZ REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS B 232 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 49 48.63 -141.48 REMARK 500 ASN A 81 49.40 37.20 REMARK 500 SER A 82 116.44 -175.62 REMARK 500 ILE A 142 -60.51 -100.50 REMARK 500 ASP A 162 37.02 -142.22 REMARK 500 ASN A 176 79.05 -154.63 REMARK 500 ILE B 16 106.50 -45.71 REMARK 500 GLU B 38 -123.43 54.66 REMARK 500 LYS B 39 75.51 -67.82 REMARK 500 LEU B 49 31.85 -144.66 REMARK 500 SER B 82 113.01 -168.58 REMARK 500 ILE B 133 16.74 -68.42 REMARK 500 GLN B 217 42.02 -140.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA E 9 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA E 8 OP1 REMARK 620 2 ASP B 114 OD2 118.0 REMARK 620 3 ASP B 127 OD1 79.7 86.0 REMARK 620 4 HOH B 454 O 88.6 76.4 151.4 REMARK 620 5 HOH B 465 O 136.7 60.1 137.7 48.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA F 8 OP2 REMARK 620 2 HOH F 415 O 135.6 REMARK 620 3 ASP A 127 OD1 91.4 94.4 REMARK 620 4 ILE A 142 O 125.1 99.3 81.8 REMARK 620 5 HOH A 469 O 87.8 100.9 158.9 81.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA F 8 OP1 REMARK 620 2 DA F 9 OP2 92.5 REMARK 620 3 ASP A 114 OD1 100.0 163.4 REMARK 620 4 ASP A 127 OD2 84.0 107.5 84.8 REMARK 620 5 VAL A 128 O 158.3 74.9 96.2 83.1 REMARK 620 6 HOH A 412 O 81.6 92.9 78.2 155.5 116.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA F 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GIG RELATED DB: PDB REMARK 900 Q138F HINCII BOUND TO COGNATE DNA GTCGAC REMARK 900 RELATED ID: 2GIH RELATED DB: PDB REMARK 900 Q138F HINCII BOUND TO COGNATE DNA GTCGAC AND CA2+ REMARK 900 RELATED ID: 2GII RELATED DB: PDB REMARK 900 Q138F HINCII BOUND TO COGNATE DNA GTTAAC REMARK 900 RELATED ID: 1TX3 RELATED DB: PDB REMARK 900 WILD TYPE HINCII BOUND TO COGNATE DNA GTCGAC REMARK 900 RELATED ID: 2GIE RELATED DB: PDB DBREF 2GIJ A 2 258 UNP P17743 T2C2_HAEIN 2 258 DBREF 2GIJ B 2 258 UNP P17743 T2C2_HAEIN 2 258 DBREF 2GIJ E 1 14 PDB 2GIJ 2GIJ 1 14 DBREF 2GIJ F 1 14 PDB 2GIJ 2GIJ 1 14 SEQADV 2GIJ THR A 130 UNP P17743 ARG 130 CONFLICT SEQADV 2GIJ PHE A 138 UNP P17743 GLN 138 ENGINEERED MUTATION SEQADV 2GIJ TRP A 173 UNP P17743 SER 173 CONFLICT SEQADV 2GIJ THR B 130 UNP P17743 ARG 130 CONFLICT SEQADV 2GIJ PHE B 138 UNP P17743 GLN 138 ENGINEERED MUTATION SEQADV 2GIJ TRP B 173 UNP P17743 SER 173 CONFLICT SEQRES 1 E 14 DG DC DC DG DG DT DT DA DA DC DC DG DG SEQRES 2 E 14 DC SEQRES 1 F 14 DG DC DC DG DG DT DT DA DA DC DC DG DG SEQRES 2 F 14 DC SEQRES 1 A 257 SER PHE ILE LYS PRO ILE TYR GLN ASP ILE ASN SER ILE SEQRES 2 A 257 LEU ILE GLY GLN LYS VAL LYS ARG PRO LYS SER GLY THR SEQRES 3 A 257 LEU SER GLY HIS ALA ALA GLY GLU PRO PHE GLU LYS LEU SEQRES 4 A 257 VAL TYR LYS PHE LEU LYS GLU ASN LEU SER ASP LEU THR SEQRES 5 A 257 PHE LYS GLN TYR GLU TYR LEU ASN ASP LEU PHE MET LYS SEQRES 6 A 257 ASN PRO ALA ILE ILE GLY HIS GLU ALA ARG TYR LYS LEU SEQRES 7 A 257 PHE ASN SER PRO THR LEU LEU PHE LEU LEU SER ARG GLY SEQRES 8 A 257 LYS ALA ALA THR GLU ASN TRP SER ILE GLU ASN LEU PHE SEQRES 9 A 257 GLU GLU LYS GLN ASN ASP THR ALA ASP ILE LEU LEU VAL SEQRES 10 A 257 LYS ASP GLN PHE TYR GLU LEU LEU ASP VAL LYS THR ARG SEQRES 11 A 257 ASN ILE SER LYS SER ALA PHE ALA PRO ASN ILE ILE SER SEQRES 12 A 257 ALA TYR LYS LEU ALA GLN THR CYS ALA LYS MET ILE ASP SEQRES 13 A 257 ASN LYS GLU PHE ASP LEU PHE ASP ILE ASN TYR LEU GLU SEQRES 14 A 257 VAL ASP TRP GLU LEU ASN GLY GLU ASP LEU VAL CYS VAL SEQRES 15 A 257 SER THR SER PHE ALA GLU LEU PHE LYS SER GLU PRO SER SEQRES 16 A 257 GLU LEU TYR ILE ASN TRP ALA ALA ALA MET GLN ILE GLN SEQRES 17 A 257 PHE HIS VAL ARG ASP LEU ASP GLN GLY PHE ASN GLY THR SEQRES 18 A 257 ARG GLU GLU TRP ALA LYS SER TYR LEU LYS HIS PHE VAL SEQRES 19 A 257 THR GLN ALA GLU GLN ARG ALA ILE SER MET ILE ASP LYS SEQRES 20 A 257 PHE VAL LYS PRO PHE LYS LYS TYR ILE LEU SEQRES 1 B 257 SER PHE ILE LYS PRO ILE TYR GLN ASP ILE ASN SER ILE SEQRES 2 B 257 LEU ILE GLY GLN LYS VAL LYS ARG PRO LYS SER GLY THR SEQRES 3 B 257 LEU SER GLY HIS ALA ALA GLY GLU PRO PHE GLU LYS LEU SEQRES 4 B 257 VAL TYR LYS PHE LEU LYS GLU ASN LEU SER ASP LEU THR SEQRES 5 B 257 PHE LYS GLN TYR GLU TYR LEU ASN ASP LEU PHE MET LYS SEQRES 6 B 257 ASN PRO ALA ILE ILE GLY HIS GLU ALA ARG TYR LYS LEU SEQRES 7 B 257 PHE ASN SER PRO THR LEU LEU PHE LEU LEU SER ARG GLY SEQRES 8 B 257 LYS ALA ALA THR GLU ASN TRP SER ILE GLU ASN LEU PHE SEQRES 9 B 257 GLU GLU LYS GLN ASN ASP THR ALA ASP ILE LEU LEU VAL SEQRES 10 B 257 LYS ASP GLN PHE TYR GLU LEU LEU ASP VAL LYS THR ARG SEQRES 11 B 257 ASN ILE SER LYS SER ALA PHE ALA PRO ASN ILE ILE SER SEQRES 12 B 257 ALA TYR LYS LEU ALA GLN THR CYS ALA LYS MET ILE ASP SEQRES 13 B 257 ASN LYS GLU PHE ASP LEU PHE ASP ILE ASN TYR LEU GLU SEQRES 14 B 257 VAL ASP TRP GLU LEU ASN GLY GLU ASP LEU VAL CYS VAL SEQRES 15 B 257 SER THR SER PHE ALA GLU LEU PHE LYS SER GLU PRO SER SEQRES 16 B 257 GLU LEU TYR ILE ASN TRP ALA ALA ALA MET GLN ILE GLN SEQRES 17 B 257 PHE HIS VAL ARG ASP LEU ASP GLN GLY PHE ASN GLY THR SEQRES 18 B 257 ARG GLU GLU TRP ALA LYS SER TYR LEU LYS HIS PHE VAL SEQRES 19 B 257 THR GLN ALA GLU GLN ARG ALA ILE SER MET ILE ASP LYS SEQRES 20 B 257 PHE VAL LYS PRO PHE LYS LYS TYR ILE LEU HET NA F 403 1 HET CA A 401 1 HET CA B 402 1 HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 5 NA NA 1+ FORMUL 6 CA 2(CA 2+) FORMUL 8 HOH *330(H2 O) HELIX 1 1 ILE A 4 PRO A 6 5 3 HELIX 2 2 ILE A 7 ILE A 16 1 10 HELIX 3 3 PRO A 36 LEU A 49 1 14 HELIX 4 4 GLN A 56 LYS A 66 1 11 HELIX 5 5 GLY A 72 LYS A 78 1 7 HELIX 6 6 LEU A 79 ASN A 81 5 3 HELIX 7 7 SER A 82 SER A 90 1 9 HELIX 8 8 GLY A 92 TRP A 99 1 8 HELIX 9 9 ALA A 145 LYS A 159 1 15 HELIX 10 10 PHE A 191 SER A 193 5 3 HELIX 11 11 GLU A 194 LEU A 198 5 5 HELIX 12 12 HIS A 211 LEU A 215 5 5 HELIX 13 13 THR A 222 VAL A 250 1 29 HELIX 14 14 LYS A 251 ILE A 257 5 7 HELIX 15 15 ILE B 4 PRO B 6 5 3 HELIX 16 16 ILE B 7 ILE B 16 1 10 HELIX 17 17 LEU B 40 LEU B 49 1 10 HELIX 18 18 GLN B 56 LYS B 66 1 11 HELIX 19 19 GLY B 72 LYS B 78 1 7 HELIX 20 20 LEU B 79 ASN B 81 5 3 HELIX 21 21 SER B 82 SER B 90 1 9 HELIX 22 22 GLY B 92 TRP B 99 1 8 HELIX 23 23 ALA B 145 ASN B 158 1 14 HELIX 24 24 PHE B 191 SER B 193 5 3 HELIX 25 25 GLU B 194 LEU B 198 5 5 HELIX 26 26 HIS B 211 LEU B 215 5 5 HELIX 27 27 THR B 222 VAL B 250 1 29 HELIX 28 28 PHE B 253 ILE B 257 5 5 SHEET 1 A 6 LYS A 19 LYS A 21 0 SHEET 2 A 6 ASP A 179 GLU A 189 -1 O LEU A 180 N VAL A 20 SHEET 3 A 6 PHE A 164 LEU A 175 -1 N GLU A 170 O SER A 186 SHEET 4 A 6 PHE A 122 ASN A 132 1 N LEU A 125 O ASP A 165 SHEET 5 A 6 ILE A 115 LYS A 119 -1 N ILE A 115 O LEU A 126 SHEET 6 A 6 THR A 53 LYS A 55 -1 N PHE A 54 O LEU A 116 SHEET 1 B 3 ASN A 141 SER A 144 0 SHEET 2 B 3 GLN A 207 GLN A 209 -1 O ILE A 208 N ILE A 143 SHEET 3 B 3 ILE A 200 ASN A 201 -1 N ASN A 201 O GLN A 207 SHEET 1 C 5 THR B 53 LYS B 55 0 SHEET 2 C 5 ILE B 115 LYS B 119 -1 O LEU B 116 N PHE B 54 SHEET 3 C 5 PHE B 122 ASN B 132 -1 O LEU B 126 N ILE B 115 SHEET 4 C 5 PHE B 164 GLU B 174 1 O VAL B 171 N LYS B 129 SHEET 5 C 5 VAL B 181 GLU B 189 -1 O SER B 186 N GLU B 170 SHEET 1 D 3 ASN B 141 SER B 144 0 SHEET 2 D 3 GLN B 207 GLN B 209 -1 O ILE B 208 N ILE B 142 SHEET 3 D 3 TYR B 199 ASN B 201 -1 N ASN B 201 O GLN B 207 LINK OP1 DA E 8 CA CA B 402 1555 1555 2.37 LINK OP2 DA F 8 NA NA F 403 1555 1555 2.35 LINK OP1 DA F 8 CA CA A 401 1555 1555 2.26 LINK OP2 DA F 9 CA CA A 401 1555 1555 2.55 LINK NA NA F 403 O HOH F 415 1555 1555 2.49 LINK NA NA F 403 OD1 ASP A 127 1555 1555 2.46 LINK NA NA F 403 O ILE A 142 1555 1555 2.45 LINK NA NA F 403 O HOH A 469 1555 1555 2.42 LINK OD1 ASP A 114 CA CA A 401 1555 1555 2.27 LINK OD2 ASP A 127 CA CA A 401 1555 1555 2.42 LINK O VAL A 128 CA CA A 401 1555 1555 2.27 LINK CA CA A 401 O HOH A 412 1555 1555 2.31 LINK OD2 ASP B 114 CA CA B 402 1555 1555 2.52 LINK OD1 ASP B 127 CA CA B 402 1555 1555 3.26 LINK CA CA B 402 O HOH B 454 1555 1555 2.97 LINK CA CA B 402 O HOH B 465 1555 1555 2.15 SITE 1 AC1 6 ASP A 114 ASP A 127 VAL A 128 HOH A 412 SITE 2 AC1 6 DA F 8 DA F 9 SITE 1 AC2 6 ASP B 114 ASP B 127 VAL B 128 HOH B 454 SITE 2 AC2 6 HOH B 465 DA E 8 SITE 1 AC3 7 ASP A 127 LYS A 129 ILE A 142 HOH A 469 SITE 2 AC3 7 DT F 7 DA F 8 HOH F 415 CRYST1 50.462 91.773 66.543 90.00 104.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019817 0.000000 0.005110 0.00000 SCALE2 0.000000 0.010896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015519 0.00000