HEADER TRANSFERASE 29-MAR-06 2GIV TITLE HUMAN MYST HISTONE ACETYLTRANSFERASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HISTONE ACETYLTRANSFERASE MYST1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYST PROTEIN 1, MOZ, YBF2/SAS3, SAS2 AND TIP60 PROTEIN 1, COMPND 5 HMOF; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYST1, MOF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS RIL KEYWDS HISTONE ACETYLTRANSFERASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MIN,H.WU,P.LOPPNAU,J.WEIGELT,M.SUNDSTROM,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 5 06-NOV-24 2GIV 1 REMARK REVDAT 4 15-NOV-23 2GIV 1 REMARK REVDAT 3 30-AUG-23 2GIV 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2GIV 1 VERSN REVDAT 1 11-APR-06 2GIV 0 JRNL AUTH H.WU,J.MIN,P.LOPPNAU,J.WEIGELT,M.SUNDSTROM,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN MYST HISTONE JRNL TITL 2 ACETYLTRANSFERASE 1 IN COMPLEX WITH ACETYLCOENZYME A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 20906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 38.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2219 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3017 ; 2.122 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 9.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;35.436 ;23.854 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;16.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.579 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.210 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1663 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1057 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1482 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 167 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 1.249 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2091 ; 1.898 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1060 ; 2.948 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ; 4.265 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 41.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1MJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M CACL2, PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.15250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.87650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.28850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.87650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.15250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.28850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 THR A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 202 REMARK 465 PHE A 203 REMARK 465 ARG A 204 REMARK 465 GLY A 205 REMARK 465 THR A 206 REMARK 465 LEU A 207 REMARK 465 LYS A 254 REMARK 465 SER A 255 REMARK 465 ALA A 256 REMARK 465 GLN A 257 REMARK 465 TYR A 258 REMARK 465 LYS A 259 REMARK 465 LYS A 260 REMARK 465 PRO A 275 REMARK 465 LYS A 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 ASP A 27 CG OD1 OD2 REMARK 470 LYS A 30 CB CG CD CE NZ REMARK 470 GLN A 31 CB CG CD OE1 NE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 247 CB CG CD CE NZ REMARK 470 LEU A 248 CB CG CD1 CD2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 253 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 658 O HOH A 682 2.11 REMARK 500 OE2 GLU A 117 OH TYR A 155 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 100 C ALY A 101 N 0.277 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 274 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 -86.29 -69.01 REMARK 500 LYS A 33 97.19 -22.36 REMARK 500 SER A 71 -131.32 49.75 REMARK 500 LYS A 237 54.58 39.44 REMARK 500 LEU A 248 92.25 -178.43 REMARK 500 VAL A 249 74.71 9.77 REMARK 500 GLU A 250 -71.43 -89.06 REMARK 500 GLU A 251 71.24 50.39 REMARK 500 HIS A 252 -167.19 -124.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 30 GLN A 31 147.24 REMARK 500 GLN A 31 PRO A 32 -35.85 REMARK 500 PRO A 32 LYS A 33 56.76 REMARK 500 LEU A 248 VAL A 249 42.69 REMARK 500 VAL A 249 GLU A 250 -147.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 40 SG 105.1 REMARK 620 3 HIS A 53 NE2 99.8 105.1 REMARK 620 4 CYS A 57 SG 111.9 124.4 107.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 500 DBREF 2GIV A 1 276 GB 14149875 NP_115564 174 449 SEQADV 2GIV ALY A 101 GB 14149875 LYS 274 MODIFIED RESIDUE SEQADV 2GIV MET A -18 GB 14149875 INITIATING METHIONINE SEQADV 2GIV GLY A -17 GB 14149875 CLONING ARTIFACT SEQADV 2GIV SER A -16 GB 14149875 CLONING ARTIFACT SEQADV 2GIV SER A -15 GB 14149875 CLONING ARTIFACT SEQADV 2GIV HIS A -14 GB 14149875 EXPRESSION TAG SEQADV 2GIV HIS A -13 GB 14149875 EXPRESSION TAG SEQADV 2GIV HIS A -12 GB 14149875 EXPRESSION TAG SEQADV 2GIV HIS A -11 GB 14149875 EXPRESSION TAG SEQADV 2GIV HIS A -10 GB 14149875 EXPRESSION TAG SEQADV 2GIV HIS A -9 GB 14149875 EXPRESSION TAG SEQADV 2GIV SER A -8 GB 14149875 CLONING ARTIFACT SEQADV 2GIV SER A -7 GB 14149875 CLONING ARTIFACT SEQADV 2GIV GLY A -6 GB 14149875 CLONING ARTIFACT SEQADV 2GIV LEU A -5 GB 14149875 CLONING ARTIFACT SEQADV 2GIV VAL A -4 GB 14149875 CLONING ARTIFACT SEQADV 2GIV PRO A -3 GB 14149875 CLONING ARTIFACT SEQADV 2GIV ARG A -2 GB 14149875 CLONING ARTIFACT SEQADV 2GIV GLY A -1 GB 14149875 CLONING ARTIFACT SEQADV 2GIV SER A 0 GB 14149875 CLONING ARTIFACT SEQRES 1 A 295 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 295 LEU VAL PRO ARG GLY SER THR LYS VAL LYS TYR VAL ASP SEQRES 3 A 295 LYS ILE HIS ILE GLY ASN TYR GLU ILE ASP ALA TRP TYR SEQRES 4 A 295 PHE SER PRO PHE PRO GLU ASP TYR GLY LYS GLN PRO LYS SEQRES 5 A 295 LEU TRP LEU CYS GLU TYR CYS LEU LYS TYR MET LYS TYR SEQRES 6 A 295 GLU LYS SER TYR ARG PHE HIS LEU GLY GLN CYS GLN TRP SEQRES 7 A 295 ARG GLN PRO PRO GLY LYS GLU ILE TYR ARG LYS SER ASN SEQRES 8 A 295 ILE SER VAL HIS GLU VAL ASP GLY LYS ASP HIS LYS ILE SEQRES 9 A 295 TYR CYS GLN ASN LEU CYS LEU LEU ALA LYS LEU PHE LEU SEQRES 10 A 295 ASP HIS ALY THR LEU TYR PHE ASP VAL GLU PRO PHE VAL SEQRES 11 A 295 PHE TYR ILE LEU THR GLU VAL ASP ARG GLN GLY ALA HIS SEQRES 12 A 295 ILE VAL GLY TYR PHE SER LYS GLU LYS GLU SER PRO ASP SEQRES 13 A 295 GLY ASN ASN VAL ALA CYS ILE LEU THR LEU PRO PRO TYR SEQRES 14 A 295 GLN ARG ARG GLY TYR GLY LYS PHE LEU ILE ALA PHE SER SEQRES 15 A 295 TYR GLU LEU SER LYS LEU GLU SER THR VAL GLY SER PRO SEQRES 16 A 295 GLU LYS PRO LEU SER ASP LEU GLY LYS LEU SER TYR ARG SEQRES 17 A 295 SER TYR TRP SER TRP VAL LEU LEU GLU ASN LEU ARG ASP SEQRES 18 A 295 PHE ARG GLY THR LEU SER ILE LYS ASP LEU SER GLN MET SEQRES 19 A 295 THR SER ILE THR GLN ASN ASP ILE ILE SER THR LEU GLN SEQRES 20 A 295 SER LEU ASN MET VAL LYS TYR TRP LYS GLY GLN HIS VAL SEQRES 21 A 295 ILE CYS VAL THR PRO LYS LEU VAL GLU GLU HIS LEU LYS SEQRES 22 A 295 SER ALA GLN TYR LYS LYS PRO PRO ILE THR VAL ASP SER SEQRES 23 A 295 VAL CYS LEU LYS TRP ALA PRO PRO LYS MODRES 2GIV ALY A 101 LYS N(6)-ACETYLLYSINE HET ALY A 101 12 HET ZN A 501 1 HET CL A 502 1 HET ACO A 500 51 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ACO ACETYL COENZYME *A FORMUL 1 ALY C8 H16 N2 O3 FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 ACO C23 H38 N7 O17 P3 S FORMUL 5 HOH *185(H2 O) HELIX 1 1 PRO A 25 GLY A 29 5 5 HELIX 2 2 TYR A 46 CYS A 57 1 12 HELIX 3 3 HIS A 83 LEU A 96 1 14 HELIX 4 4 PRO A 148 GLN A 151 5 4 HELIX 5 5 GLY A 154 GLU A 170 1 17 HELIX 6 6 SER A 181 ARG A 201 1 21 HELIX 7 7 SER A 208 SER A 217 1 10 HELIX 8 8 THR A 219 LEU A 230 1 12 HELIX 9 9 ASP A 266 LEU A 270 5 5 SHEET 1 A 4 TYR A 14 ASP A 17 0 SHEET 2 A 4 LYS A 8 ILE A 11 -1 N ILE A 11 O TYR A 14 SHEET 3 A 4 LYS A 33 LEU A 36 1 O LEU A 36 N HIS A 10 SHEET 4 A 4 TYR A 43 MET A 44 -1 O MET A 44 N TRP A 35 SHEET 1 B 5 LYS A 65 LYS A 70 0 SHEET 2 B 5 ILE A 73 ASP A 79 -1 O GLU A 77 N LYS A 65 SHEET 3 B 5 PHE A 110 VAL A 118 -1 O PHE A 112 N VAL A 78 SHEET 4 B 5 ALA A 123 GLU A 132 -1 O VAL A 126 N LEU A 115 SHEET 5 B 5 ILE A 144 THR A 146 -1 O LEU A 145 N TYR A 128 SHEET 1 C 2 ASN A 139 VAL A 141 0 SHEET 2 C 2 SER A 175 PRO A 176 1 O SER A 175 N ASN A 140 SHEET 1 D 2 VAL A 233 TRP A 236 0 SHEET 2 D 2 GLN A 239 ILE A 242 -1 O VAL A 241 N LYS A 234 LINK C HIS A 100 N ALY A 101 1555 1555 1.61 LINK C ALY A 101 N THR A 102 1555 1555 1.33 LINK SG CYS A 37 ZN ZN A 501 1555 1555 2.42 LINK SG CYS A 40 ZN ZN A 501 1555 1555 2.24 LINK NE2 HIS A 53 ZN ZN A 501 1555 1555 2.16 LINK SG CYS A 57 ZN ZN A 501 1555 1555 2.31 CISPEP 1 LYS A 178 PRO A 179 0 -1.21 SITE 1 AC1 4 CYS A 37 CYS A 40 HIS A 53 CYS A 57 SITE 1 AC2 4 ASP A 17 HOH A 507 HOH A 522 HOH A 529 SITE 1 AC3 28 TRP A 19 PHE A 97 LEU A 98 ALA A 142 SITE 2 AC3 28 CYS A 143 ILE A 144 LEU A 145 THR A 146 SITE 3 AC3 28 GLN A 151 ARG A 152 ARG A 153 GLY A 154 SITE 4 AC3 28 GLY A 156 LYS A 157 GLU A 177 LEU A 180 SITE 5 AC3 28 SER A 181 LEU A 183 LEU A 186 SER A 187 SITE 6 AC3 28 SER A 190 HOH A 503 HOH A 515 HOH A 525 SITE 7 AC3 28 HOH A 536 HOH A 623 HOH A 659 HOH A 660 CRYST1 46.305 58.577 119.753 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008351 0.00000