HEADER OXIDOREDUCTASE, METAL-BINDING PROTEIN 30-MAR-06 2GJ1 OBSLTE 21-MAR-18 2GJ1 5GH0 TITLE CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE AT 2.3A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LPO; COMPND 5 EC: 1.11.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS PEROXIDASE, OXIDOREDUCTASE, METAL-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,N.SINGH,S.SHARMA,A.BHUSHAN,T.P.SINGH REVDAT 4 21-MAR-18 2GJ1 1 OBSLTE REVDAT 3 13-JUL-11 2GJ1 1 VERSN REVDAT 2 24-FEB-09 2GJ1 1 VERSN REVDAT 1 18-APR-06 2GJ1 0 JRNL AUTH A.K.SINGH,N.SINGH,S.SHARMA,A.BHUSHAN,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE AT 2.3A JRNL TITL 2 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 183 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.89000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5020 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6831 ; 1.394 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 583 ; 4.086 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 874 ;18.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 731 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3820 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2240 ; 0.249 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 442 ; 0.157 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.116 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.151 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.194 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2930 ; 0.679 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4716 ; 1.287 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2090 ; 1.688 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2115 ; 2.842 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29132 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CXP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HYDROCHLORIDE, PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.33350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 238 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PHE A 238 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -21.44 62.14 REMARK 500 ASN A 4 15.85 -142.99 REMARK 500 ALA A 42 -21.81 -155.52 REMARK 500 ARG A 50 -27.47 153.40 REMARK 500 GLU A 104 -96.79 -113.89 REMARK 500 ASN A 108 50.64 77.08 REMARK 500 ASP A 123 -121.42 55.94 REMARK 500 VAL A 152 -90.27 -73.70 REMARK 500 CYS A 153 -84.12 -34.62 REMARK 500 PRO A 154 -162.11 -79.18 REMARK 500 THR A 155 -40.92 -140.79 REMARK 500 PRO A 156 163.57 -45.50 REMARK 500 PRO A 156A -65.84 -29.96 REMARK 500 TYR A 156B -174.90 71.33 REMARK 500 GLN A 157 -43.17 -171.04 REMARK 500 SER A 158 -80.66 -52.17 REMARK 500 LEU A 159 -159.72 -90.66 REMARK 500 PRO A 352 126.59 -39.36 REMARK 500 LYS A 469 -27.38 75.53 REMARK 500 GLU A 579 -95.13 -78.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 605 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 336 NE2 REMARK 620 2 HEM A 605 NA 96.8 REMARK 620 3 HEM A 605 NB 98.1 90.7 REMARK 620 4 HEM A 605 NC 95.6 167.5 86.3 REMARK 620 5 HEM A 605 ND 92.2 89.6 169.5 91.2 REMARK 620 6 OSM A 702 O 173.4 83.8 75.2 83.7 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 96 OD1 REMARK 620 2 SER A 174 OG 84.2 REMARK 620 3 THR A 168 OG1 143.9 77.5 REMARK 620 4 THR A 168 O 146.2 112.9 69.9 REMARK 620 5 ASP A 96 O 75.2 79.6 130.0 79.4 REMARK 620 6 ASP A 172 OD1 77.3 78.2 68.7 133.2 146.1 REMARK 620 7 PHE A 170 O 85.5 153.1 97.0 89.1 121.4 75.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 581 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 587 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 588 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 589 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 590 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 591 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 688 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OSM A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CXP RELATED DB: PDB REMARK 900 CRYOGENIC CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM C DBREF 2GJ1 A 1 580 UNP P80025 PERL_BOVIN 130 712 SEQRES 1 A 583 VAL LYS CYS ASP GLU ASN SER PRO TYR ARG THR ILE THR SEQRES 2 A 583 GLY ASP CYS ASN ASN ARG ARG SER PRO ALA LEU GLY ALA SEQRES 3 A 583 ALA ASN ARG ALA LEU ALA ARG TRP LEU PRO ALA GLU TYR SEQRES 4 A 583 GLU ASP GLY LEU ALA LEU PRO PHE GLY TRP THR GLN ARG SEQRES 5 A 583 LYS THR ARG ASN GLY PHE ARG VAL PRO LEU ALA ARG GLU SEQRES 6 A 583 VAL SER ASN LYS ILE VAL GLY TYR LEU ASP GLU GLU GLY SEQRES 7 A 583 VAL LEU ASP GLN ASN ARG SER LEU LEU PHE MET GLN TRP SEQRES 8 A 583 GLY GLN ILE VAL ASP HIS ASP LEU ASP PHE ALA PRO GLU SEQRES 9 A 583 THR GLU LEU GLY SER ASN GLU HIS SER LYS THR GLN CYS SEQRES 10 A 583 GLU GLU TYR CYS ILE GLN GLY ASP ASN CYS PHE PRO ILE SEQRES 11 A 583 MET PHE PRO LYS ASN ASP PRO LYS LEU LYS THR GLN GLY SEQRES 12 A 583 LYS CYS MET PRO PHE PHE ARG ALA GLY PHE VAL CYS PRO SEQRES 13 A 583 THR PRO PRO TYR GLN SER LEU ALA ARG GLU GLN ILE ASN SEQRES 14 A 583 ALA VAL THR SER PHE LEU ASP ALA SER LEU VAL TYR GLY SEQRES 15 A 583 SER GLU PRO SER LEU ALA SER ARG LEU ARG ASN LEU SER SEQRES 16 A 583 SER PRO LEU GLY LEU MET ALA VAL ASN GLN GLU ALA TRP SEQRES 17 A 583 ASP HIS GLY LEU ALA TYR LEU PRO PHE ASN ASN LYS LYS SEQRES 18 A 583 PRO SER PRO CYS GLU PHE ILE ASN THR THR ALA ARG VAL SEQRES 19 A 583 PRO CYS PHE LEU ALA GLY ASP PHE ARG ALA SER GLU GLN SEQRES 20 A 583 ILE LEU LEU ALA THR ALA HIS THR LEU LEU LEU ARG GLU SEQRES 21 A 583 HIS ASN ARG LEU ALA ARG GLU LEU LYS LYS LEU ASN PRO SEQRES 22 A 583 HIS TRP ASN GLY GLU LYS LEU TYR GLN GLU ALA ARG LYS SEQRES 23 A 583 ILE LEU GLY ALA PHE ILE GLN ILE ILE THR PHE ARG ASP SEQRES 24 A 583 TYR LEU PRO ILE VAL LEU GLY SER GLU MET GLN LYS TRP SEQRES 25 A 583 ILE PRO PRO TYR GLN GLY TYR ASN ASN SER VAL ASP PRO SEQRES 26 A 583 ARG ILE SER ASN VAL PHE THR PHE ALA PHE ARG PHE GLY SEQRES 27 A 583 HIS MET GLU VAL PRO SER THR VAL SER ARG LEU ASP GLU SEQRES 28 A 583 ASN TYR GLN PRO TRP GLY PRO GLU ALA GLU LEU PRO LEU SEQRES 29 A 583 HIS THR LEU PHE PHE ASN THR TRP ARG ILE ILE LYS ASP SEQRES 30 A 583 GLY GLY ILE ASP PRO LEU VAL ARG GLY LEU LEU ALA LYS SEQRES 31 A 583 LYS SER LYS LEU MET ASN GLN ASP LYS MET VAL THR SER SEQRES 32 A 583 GLU LEU ARG ASN LYS LEU PHE GLN PRO THR HIS LYS ILE SEQRES 33 A 583 HIS GLY PHE ASP LEU ALA ALA ILE ASN LEU GLN ARG CYS SEQRES 34 A 583 ARG ASP HIS GLY MET PRO GLY TYR ASN SER TRP ARG GLY SEQRES 35 A 583 PHE CYS GLY LEU SER GLN PRO LYS THR LEU LYS GLY LEU SEQRES 36 A 583 GLN THR VAL LEU LYS ASN LYS ILE LEU ALA LYS LYS LEU SEQRES 37 A 583 MET ASP LEU TYR LYS THR PRO ASP ASN ILE ASP ILE TRP SEQRES 38 A 583 ILE GLY GLY ASN ALA GLU PRO MET VAL GLU ARG GLY ARG SEQRES 39 A 583 VAL GLY PRO LEU LEU ALA CYS LEU LEU GLY ARG GLN PHE SEQRES 40 A 583 GLN GLN ILE ARG ASP GLY ASP ARG PHE TRP TRP GLU ASN SEQRES 41 A 583 PRO GLY VAL PHE THR GLU LYS GLN ARG ASP SER LEU GLN SEQRES 42 A 583 LYS VAL SER PHE SER ARG LEU ILE CYS ASP ASN THR HIS SEQRES 43 A 583 ILE THR LYS VAL PRO LEU HIS ALA PHE GLN ALA ASN ASN SEQRES 44 A 583 TYR PRO HIS ASP PHE VAL ASP CYS SER THR VAL ASP LYS SEQRES 45 A 583 LEU ASP LEU SER PRO TRP ALA SER ARG GLU ASN MODRES 2GJ1 ASN A 81 ASN GLYCOSYLATION SITE MODRES 2GJ1 ASN A 189 ASN GLYCOSYLATION SITE MODRES 2GJ1 ASN A 225 ASN GLYCOSYLATION SITE MODRES 2GJ1 ASN A 317 ASN GLYCOSYLATION SITE HET NAG A 581 14 HET NAG A 582 14 HET NAG A 583 14 HET NAG A 584 14 HET NAG A 585 14 HET NAG A 586 14 HET MAN A 587 11 HET NAG A 588 14 HET NAG A 589 14 HET NO3 A 590 4 HET NO3 A 591 4 HET CO3 A 688 4 HET CA A 701 1 HET HEM A 605 43 HET OSM A 702 4 HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM MAN ALPHA-D-MANNOSE HETNAM NO3 NITRATE ION HETNAM CO3 CARBONATE ION HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OSM 1-(OXIDOSULFANYL)METHANAMINE HETSYN HEM HEME FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 4 MAN C6 H12 O6 FORMUL 6 NO3 2(N O3 1-) FORMUL 8 CO3 C O3 2- FORMUL 9 CA CA 2+ FORMUL 10 HEM C34 H32 FE N4 O4 FORMUL 11 OSM C H5 N O S FORMUL 12 HOH *318(H2 O) HELIX 1 1 LEU A 60 VAL A 69 1 10 HELIX 2 2 LEU A 84 ASP A 98 1 15 HELIX 3 3 HIS A 110 CYS A 115 1 6 HELIX 4 4 ASP A 134 GLN A 140 1 7 HELIX 5 5 ALA A 173 GLY A 178 1 6 HELIX 6 6 GLU A 180 ARG A 188 1 9 HELIX 7 7 SER A 219 ILE A 224 1 6 HELIX 8 8 GLN A 243 ASN A 268 1 26 HELIX 9 9 ASN A 272 ASP A 295 1 24 HELIX 10 10 LEU A 297 GLY A 302 1 6 HELIX 11 11 GLU A 305 ILE A 310 1 6 HELIX 12 12 VAL A 327 PHE A 332 1 6 HELIX 13 13 ARG A 333 VAL A 339 5 7 HELIX 14 14 HIS A 362 PHE A 365 5 4 HELIX 15 15 THR A 368 LYS A 373 1 6 HELIX 16 16 ILE A 377 LYS A 387 1 11 HELIX 17 17 THR A 399 ASN A 404 1 6 HELIX 18 18 ASP A 416 HIS A 428 1 13 HELIX 19 19 GLY A 432 CYS A 440 1 9 HELIX 20 20 THR A 447 LYS A 456 1 10 HELIX 21 21 ASN A 457 LYS A 469 1 13 HELIX 22 22 THR A 470 ILE A 474 5 5 HELIX 23 23 ASP A 475 ALA A 482 1 8 HELIX 24 24 GLY A 492 GLY A 509 1 18 HELIX 25 25 THR A 521 GLN A 529 1 9 HELIX 26 26 SER A 532 THR A 541 1 10 HELIX 27 27 SER A 565 VAL A 567 5 3 HELIX 28 28 LEU A 572 ALA A 576 5 5 SHEET 1 A 2 ARG A 27 ALA A 28 0 SHEET 2 A 2 ILE A 164 ASN A 165 -1 O ASN A 165 N ARG A 27 SHEET 1 B 2 LEU A 78 SER A 83 0 SHEET 2 B 2 LYS A 388 LYS A 390 -1 O SER A 389 N ASP A 79 SHEET 1 C 2 ILE A 128 MET A 129 0 SHEET 2 C 2 CYS A 143 MET A 144 -1 O MET A 144 N ILE A 128 SHEET 1 D 2 THR A 342 SER A 344 0 SHEET 2 D 2 GLU A 358 PRO A 360 -1 O LEU A 359 N VAL A 343 SHEET 1 E 2 LEU A 406 PHE A 407 0 SHEET 2 E 2 HIS A 413A PHE A 415 -1 O PHE A 415 N LEU A 406 SHEET 1 F 2 LYS A 545 VAL A 546 0 SHEET 2 F 2 VAL A 562 ASP A 563 -1 O VAL A 562 N VAL A 546 SSBOND 1 CYS A 1B CYS A 14 1555 1555 1.97 SSBOND 2 CYS A 115 CYS A 125 1555 1555 2.02 SSBOND 3 CYS A 119 CYS A 143 1555 1555 2.03 SSBOND 4 CYS A 221 CYS A 232 1555 1555 2.04 SSBOND 5 CYS A 440 CYS A 497 1555 1555 2.00 SSBOND 6 CYS A 538 CYS A 564 1555 1555 2.03 LINK ND2 ASN A 81 C1 NAG A 581 1555 1555 1.44 LINK ND2 ASN A 189 C1 NAG A 583 1555 1555 1.44 LINK ND2 ASN A 225 C1 NAG A 585 1555 1555 1.45 LINK ND2 ASN A 317 C1 NAG A 588 1555 1555 1.45 LINK O4 NAG A 581 C1 NAG A 582 1555 1555 1.44 LINK O4 NAG A 583 C1 NAG A 584 1555 1555 1.44 LINK O4 NAG A 585 C1 NAG A 586 1555 1555 1.45 LINK O4 NAG A 586 C1 MAN A 587 1555 1555 1.46 LINK O4 NAG A 588 C1 NAG A 589 1555 1555 1.45 LINK FE HEM A 605 NE2 HIS A 336 1555 1555 2.15 LINK CMB HEM A 605 OE2 GLU A 242 1555 1555 1.51 LINK CMD HEM A 605 OD2 ASP A 94 1555 1555 1.52 LINK FE HEM A 605 O OSM A 702 1555 1555 2.51 LINK CA CA A 701 OD1 ASP A 96 1555 1555 2.24 LINK CA CA A 701 OG SER A 174 1555 1555 2.54 LINK CA CA A 701 OG1 THR A 168 1555 1555 2.67 LINK CA CA A 701 O THR A 168 1555 1555 2.41 LINK CA CA A 701 O ASP A 96 1555 1555 2.28 LINK CA CA A 701 OD1 ASP A 172 1555 1555 2.50 LINK CA CA A 701 O PHE A 170 1555 1555 2.38 CISPEP 1 LYS A 217 PRO A 218 0 6.17 CISPEP 2 TYR A 557 PRO A 558 0 2.47 SITE 1 AC1 7 ASN A 81 ILE A 299 ARG A 488 GLN A 553 SITE 2 AC1 7 NAG A 582 CO3 A 688 HOH A 969 SITE 1 AC2 3 HIS A 550 GLN A 553 NAG A 581 SITE 1 AC3 8 ASN A 189 SER A 192 ALA A 198 VAL A 199 SITE 2 AC3 8 GLN A 201 NAG A 584 HOH A 812 HOH A 877 SITE 1 AC4 2 GLN A 201 NAG A 583 SITE 1 AC5 4 ASN A 225 ALA A 228 TRP A 369 NAG A 586 SITE 1 AC6 2 NAG A 585 MAN A 587 SITE 1 AC7 2 NAG A 586 HOH A 785 SITE 1 AC8 3 ASN A 317 VAL A 320 NAG A 589 SITE 1 AC9 2 NAG A 588 HOH A 964 SITE 1 BC1 6 GLU A 348 TYR A 350 ARG A 382 ILE A 543 SITE 2 BC1 6 THR A 544 LYS A 545 SITE 1 BC2 10 ALA A 30 ARG A 31 TRP A 32 LEU A 33 SITE 2 BC2 10 SER A 325 ASN A 326 VAL A 327 MET A 430 SITE 3 BC2 10 TRP A 436 HOH A 708 SITE 1 BC3 5 ASN A 81 ARG A 82 ARG A 490 NAG A 581 SITE 2 BC3 5 HOH A 969 SITE 1 BC4 5 ASP A 96 THR A 168 PHE A 170 ASP A 172 SITE 2 BC4 5 SER A 174 SITE 1 BC5 22 MET A 87 GLY A 90 GLN A 91 ASP A 94 SITE 2 BC5 22 ASP A 98 PHE A 99 ALA A 100 ARG A 239 SITE 3 BC5 22 GLU A 242 THR A 329 PHE A 332 ARG A 333 SITE 4 BC5 22 GLY A 335 HIS A 336 VAL A 339 PHE A 365 SITE 5 BC5 22 ILE A 420 ARG A 424 OSM A 702 HOH A 722 SITE 6 BC5 22 HOH A 743 HOH A 921 SITE 1 BC6 5 GLN A 91 HIS A 95 ARG A 239 GLU A 242 SITE 2 BC6 5 HEM A 605 CRYST1 54.630 80.667 77.680 90.00 102.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018305 0.000000 0.004090 0.00000 SCALE2 0.000000 0.012397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013191 0.00000