HEADER BIOSYNTHETIC PROTEIN 30-MAR-06 2GJC OBSLTE 19-JAN-10 2GJC 3FPZ TITLE CRYSTAL STRUCTURE OF THIAZOLE SYNTHASE IN SACCHAROMYCES TITLE 2 CEREVISIAE AT 1.82 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAZOLE BIOSYNTHETIC ENZYME, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: THI4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: TEV/D-TOPO KEYWDS GLUTATHIONE REDUCTASE TYPE II FAMILY, THIAZOLE SYNTHASE, KEYWDS 2 MITOCHONDRIA DNA REPAIR, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.T.JURGENSON,A.CHATTERJEE,T.P.BEGLEY,S.E.EALICK REVDAT 4 19-JAN-10 2GJC 1 OBSLTE REVDAT 3 24-FEB-09 2GJC 1 VERSN REVDAT 2 19-SEP-06 2GJC 1 JRNL REVDAT 1 12-SEP-06 2GJC 0 JRNL AUTH C.T.JURGENSON,A.CHATTERJEE,T.P.BEGLEY,S.E.EALICK JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTION OF THE JRNL TITL 2 THIAMIN BIOSYNTHETIC ENZYME THI4 FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE. JRNL REF BIOCHEMISTRY V. 45 11061 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16964967 JRNL DOI 10.1021/BI061025Z REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 63286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 14032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4513 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63286 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1RP0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.65-2.00 LI2SO4 IN 100MM HEPES REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 70.34800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.34800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.66250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 70.34800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.34800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.66250 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 70.34800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 70.34800 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.66250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 70.34800 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 70.34800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.66250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN OCTOMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 140.69600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.69600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 140.69600 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 140.69600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 GLN A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 180 REMARK 465 LYS A 181 REMARK 465 GLY A 182 REMARK 465 GLU A 183 REMARK 465 VAL A 184 REMARK 465 HIS A 200 REMARK 465 GLY A 201 REMARK 465 THR A 202 REMARK 465 GLY A 239 REMARK 465 PRO A 240 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 THR B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 GLN B 14 REMARK 465 THR B 179 REMARK 465 GLU B 180 REMARK 465 LYS B 181 REMARK 465 GLY B 182 REMARK 465 GLU B 183 REMARK 465 ALA B 199 REMARK 465 HIS B 200 REMARK 465 GLY B 201 REMARK 465 THR B 202 REMARK 465 ASP B 238 REMARK 465 GLY B 239 REMARK 465 PRO B 240 REMARK 465 PHE B 241 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 16 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ASP A 223 CG OD1 REMARK 470 SER A 225 OG REMARK 470 ASP A 238 CG OD1 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 VAL B 184 CG1 CG2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 224 CG CD1 CD2 REMARK 470 GLN B 254 CG CD OE1 NE2 REMARK 470 GLN B 256 CG CD OE1 NE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 226 O HOH A 1296 2.08 REMARK 500 NZ LYS A 143 O HOH A 1355 2.15 REMARK 500 CB SER A 225 O HOH A 1266 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 143 CD LYS A 143 CE -0.187 REMARK 500 LYS A 143 CE LYS A 143 NZ -0.206 REMARK 500 ASP A 219 CA ASP A 219 C 0.205 REMARK 500 ASP A 219 C ASP A 219 O -0.155 REMARK 500 GLY A 220 C GLY A 220 O -0.133 REMARK 500 THR A 221 CA THR A 221 CB -0.200 REMARK 500 THR A 221 CB THR A 221 CG2 -0.366 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 185 O - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 219 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 219 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 GLY A 220 CA - C - O ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 219 O - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 THR A 221 CA - CB - CG2 ANGL. DEV. = -9.0 DEGREES REMARK 500 THR A 221 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO B 21 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 54.30 -95.42 REMARK 500 PRO A 178 -16.12 -46.97 REMARK 500 CYS A 204 -23.08 176.25 REMARK 500 CYS A 205 137.66 105.79 REMARK 500 ASP A 219 -87.40 -85.17 REMARK 500 THR A 221 126.74 134.12 REMARK 500 ASP A 223 -47.94 81.52 REMARK 500 SER A 225 -36.55 35.41 REMARK 500 GLN A 226 -36.45 40.47 REMARK 500 LYS A 227 103.12 17.04 REMARK 500 GLN A 254 -30.67 63.68 REMARK 500 HIS B 16 -87.92 62.47 REMARK 500 LEU B 17 23.51 -65.06 REMARK 500 SER B 19 17.33 146.54 REMARK 500 THR B 20 131.89 168.85 REMARK 500 ALA B 73 55.45 -93.86 REMARK 500 CYS B 204 -96.81 -121.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 220 THR A 221 142.20 REMARK 500 THR A 221 ARG A 222 -148.39 REMARK 500 ARG A 222 ASP A 223 97.54 REMARK 500 ASP A 223 LEU A 224 -117.45 REMARK 500 LEU A 224 SER A 225 -115.48 REMARK 500 SER A 225 GLN A 226 -134.44 REMARK 500 GLN A 226 LYS A 227 -123.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 185 10.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS A 205 21.2 L L OUTSIDE RANGE REMARK 500 THR A 221 20.3 L L OUTSIDE RANGE REMARK 500 LEU B 17 24.6 L L OUTSIDE RANGE REMARK 500 GLN B 198 22.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1257 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH B1273 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH B1313 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1376 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B1383 DISTANCE = 5.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AHZ A 1100 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AHZ B 1101 DBREF 2GJC A 1 326 UNP P32318 THI4_YEAST 1 326 DBREF 2GJC B 1 326 UNP P32318 THI4_YEAST 1 326 SEQRES 1 A 326 MET SER ALA THR SER THR ALA THR SER THR SER ALA SER SEQRES 2 A 326 GLN LEU HIS LEU ASN SER THR PRO VAL THR HIS CYS LEU SEQRES 3 A 326 SER ASP ILE VAL LYS LYS GLU ASP TRP SER ASP PHE LYS SEQRES 4 A 326 PHE ALA PRO ILE ARG GLU SER THR VAL SER ARG ALA MET SEQRES 5 A 326 THR SER ARG TYR PHE LYS ASP LEU ASP LYS PHE ALA VAL SEQRES 6 A 326 SER ASP VAL ILE ILE VAL GLY ALA GLY SER SER GLY LEU SEQRES 7 A 326 SER ALA ALA TYR VAL ILE ALA LYS ASN ARG PRO ASP LEU SEQRES 8 A 326 LYS VAL CYS ILE ILE GLU SER SER VAL ALA PRO GLY GLY SEQRES 9 A 326 GLY SER TRP LEU GLY GLY GLN LEU PHE SER ALA MET VAL SEQRES 10 A 326 MET ARG LYS PRO ALA HIS LEU PHE LEU GLN GLU LEU GLU SEQRES 11 A 326 ILE PRO TYR GLU ASP GLU GLY ASP TYR VAL VAL VAL LYS SEQRES 12 A 326 HIS ALA ALA LEU PHE ILE SER THR VAL LEU SER LYS VAL SEQRES 13 A 326 LEU GLN LEU PRO ASN VAL LYS LEU PHE ASN ALA THR CYS SEQRES 14 A 326 VAL GLU ASP LEU VAL THR ARG PRO PRO THR GLU LYS GLY SEQRES 15 A 326 GLU VAL THR VAL ALA GLY VAL VAL THR ASN TRP THR LEU SEQRES 16 A 326 VAL THR GLN ALA HIS GLY THR GLN CYS CYS MET ASP PRO SEQRES 17 A 326 ASN VAL ILE GLU LEU ALA GLY TYR LYS ASN ASP GLY THR SEQRES 18 A 326 ARG ASP LEU SER GLN LYS HIS GLY VAL ILE LEU SER THR SEQRES 19 A 326 THR GLY HIS ASP GLY PRO PHE GLY ALA PHE CYS ALA LYS SEQRES 20 A 326 ARG ILE VAL ASP ILE ASP GLN ASN GLN LYS LEU GLY GLY SEQRES 21 A 326 MET LYS GLY LEU ASP MET ASN HIS ALA GLU HIS ASP VAL SEQRES 22 A 326 VAL ILE HIS SER GLY ALA TYR ALA GLY VAL ASP ASN MET SEQRES 23 A 326 TYR PHE ALA GLY MET GLU VAL ALA GLU LEU ASP GLY LEU SEQRES 24 A 326 ASN ARG MET GLY PRO THR PHE GLY ALA MET ALA LEU SER SEQRES 25 A 326 GLY VAL HIS ALA ALA GLU GLN ILE LEU LYS HIS PHE ALA SEQRES 26 A 326 ALA SEQRES 1 B 326 MET SER ALA THR SER THR ALA THR SER THR SER ALA SER SEQRES 2 B 326 GLN LEU HIS LEU ASN SER THR PRO VAL THR HIS CYS LEU SEQRES 3 B 326 SER ASP ILE VAL LYS LYS GLU ASP TRP SER ASP PHE LYS SEQRES 4 B 326 PHE ALA PRO ILE ARG GLU SER THR VAL SER ARG ALA MET SEQRES 5 B 326 THR SER ARG TYR PHE LYS ASP LEU ASP LYS PHE ALA VAL SEQRES 6 B 326 SER ASP VAL ILE ILE VAL GLY ALA GLY SER SER GLY LEU SEQRES 7 B 326 SER ALA ALA TYR VAL ILE ALA LYS ASN ARG PRO ASP LEU SEQRES 8 B 326 LYS VAL CYS ILE ILE GLU SER SER VAL ALA PRO GLY GLY SEQRES 9 B 326 GLY SER TRP LEU GLY GLY GLN LEU PHE SER ALA MET VAL SEQRES 10 B 326 MET ARG LYS PRO ALA HIS LEU PHE LEU GLN GLU LEU GLU SEQRES 11 B 326 ILE PRO TYR GLU ASP GLU GLY ASP TYR VAL VAL VAL LYS SEQRES 12 B 326 HIS ALA ALA LEU PHE ILE SER THR VAL LEU SER LYS VAL SEQRES 13 B 326 LEU GLN LEU PRO ASN VAL LYS LEU PHE ASN ALA THR CYS SEQRES 14 B 326 VAL GLU ASP LEU VAL THR ARG PRO PRO THR GLU LYS GLY SEQRES 15 B 326 GLU VAL THR VAL ALA GLY VAL VAL THR ASN TRP THR LEU SEQRES 16 B 326 VAL THR GLN ALA HIS GLY THR GLN CYS CYS MET ASP PRO SEQRES 17 B 326 ASN VAL ILE GLU LEU ALA GLY TYR LYS ASN ASP GLY THR SEQRES 18 B 326 ARG ASP LEU SER GLN LYS HIS GLY VAL ILE LEU SER THR SEQRES 19 B 326 THR GLY HIS ASP GLY PRO PHE GLY ALA PHE CYS ALA LYS SEQRES 20 B 326 ARG ILE VAL ASP ILE ASP GLN ASN GLN LYS LEU GLY GLY SEQRES 21 B 326 MET LYS GLY LEU ASP MET ASN HIS ALA GLU HIS ASP VAL SEQRES 22 B 326 VAL ILE HIS SER GLY ALA TYR ALA GLY VAL ASP ASN MET SEQRES 23 B 326 TYR PHE ALA GLY MET GLU VAL ALA GLU LEU ASP GLY LEU SEQRES 24 B 326 ASN ARG MET GLY PRO THR PHE GLY ALA MET ALA LEU SER SEQRES 25 B 326 GLY VAL HIS ALA ALA GLU GLN ILE LEU LYS HIS PHE ALA SEQRES 26 B 326 ALA HET AHZ A1100 38 HET AHZ B1101 38 HETNAM AHZ ADENOSINE DIPHOSPHATE 5-(BETA-ETHYL)-4-METHYL-THIAZOLE- HETNAM 2 AHZ 2-CARBOXYLIC ACID FORMUL 3 AHZ 2(C17 H19 N6 O12 P2 S 3-) FORMUL 5 HOH *598(H2 O) HELIX 1 1 HIS A 16 THR A 20 5 5 HELIX 2 2 ARG A 44 PHE A 63 1 20 HELIX 3 3 GLY A 74 ARG A 88 1 15 HELIX 4 4 GLY A 109 PHE A 113 5 5 HELIX 5 5 ALA A 122 LEU A 129 1 8 HELIX 6 6 HIS A 144 GLN A 158 1 15 HELIX 7 7 THR A 194 GLN A 198 1 5 HELIX 8 8 ALA A 243 GLN A 254 1 12 HELIX 9 9 ASP A 265 SER A 277 1 13 HELIX 10 10 GLY A 290 GLY A 298 1 9 HELIX 11 11 PHE A 306 ALA A 326 1 21 HELIX 12 12 ARG B 44 PHE B 63 1 20 HELIX 13 13 GLY B 74 ARG B 88 1 15 HELIX 14 14 GLY B 109 PHE B 113 5 5 HELIX 15 15 ALA B 122 LEU B 129 1 8 HELIX 16 16 HIS B 144 GLN B 158 1 15 HELIX 17 17 THR B 194 GLN B 198 1 5 HELIX 18 18 ALA B 243 ASP B 253 1 11 HELIX 19 19 ASP B 265 SER B 277 1 13 HELIX 20 20 GLY B 290 GLY B 298 1 9 HELIX 21 21 PHE B 306 ALA B 326 1 21 SHEET 1 A 4 VAL A 65 SER A 66 0 SHEET 2 A 4 ASN A 209 LEU A 213 1 O GLU A 212 N SER A 66 SHEET 3 A 4 VAL A 186 TRP A 193 -1 N THR A 191 O ASN A 209 SHEET 4 A 4 THR A 168 THR A 175 -1 N CYS A 169 O ASN A 192 SHEET 1 B 6 VAL A 162 PHE A 165 0 SHEET 2 B 6 VAL A 93 ILE A 96 1 N ILE A 95 O PHE A 165 SHEET 3 B 6 VAL A 68 VAL A 71 1 N ILE A 70 O ILE A 96 SHEET 4 B 6 VAL A 230 SER A 233 1 O LEU A 232 N ILE A 69 SHEET 5 B 6 MET A 286 PHE A 288 1 O TYR A 287 N SER A 233 SHEET 6 B 6 GLY A 278 ALA A 279 -1 N GLY A 278 O PHE A 288 SHEET 1 C 3 MET A 116 ARG A 119 0 SHEET 2 C 3 TYR A 139 VAL A 142 -1 O VAL A 142 N MET A 116 SHEET 3 C 3 GLU A 134 ASP A 135 -1 N GLU A 134 O VAL A 141 SHEET 1 D 4 VAL B 65 SER B 66 0 SHEET 2 D 4 ASN B 209 LEU B 213 1 O GLU B 212 N SER B 66 SHEET 3 D 4 VAL B 186 TRP B 193 -1 N THR B 191 O ASN B 209 SHEET 4 D 4 THR B 168 THR B 175 -1 N GLU B 171 O VAL B 190 SHEET 1 E 6 VAL B 162 PHE B 165 0 SHEET 2 E 6 VAL B 93 ILE B 96 1 N ILE B 95 O LYS B 163 SHEET 3 E 6 VAL B 68 VAL B 71 1 N VAL B 68 O CYS B 94 SHEET 4 E 6 VAL B 230 SER B 233 1 O LEU B 232 N VAL B 71 SHEET 5 E 6 MET B 286 PHE B 288 1 O TYR B 287 N SER B 233 SHEET 6 E 6 GLY B 278 ALA B 279 -1 N GLY B 278 O PHE B 288 SHEET 1 F 3 MET B 116 ARG B 119 0 SHEET 2 F 3 TYR B 139 VAL B 142 -1 O VAL B 140 N MET B 118 SHEET 3 F 3 GLU B 134 ASP B 135 -1 N GLU B 134 O VAL B 141 CISPEP 1 LYS A 120 PRO A 121 0 11.33 CISPEP 2 ASN B 18 SER B 19 0 -7.59 CISPEP 3 THR B 20 PRO B 21 0 -2.24 CISPEP 4 LYS B 120 PRO B 121 0 11.30 CISPEP 5 VAL B 184 THR B 185 0 -6.54 SITE 1 AC1 30 GLY A 72 GLY A 74 SER A 75 SER A 76 SITE 2 AC1 30 ILE A 96 GLU A 97 SER A 98 GLY A 104 SITE 3 AC1 30 GLY A 105 VAL A 170 ASP A 207 THR A 234 SITE 4 AC1 30 THR A 235 GLY A 236 HIS A 237 PHE A 241 SITE 5 AC1 30 GLY A 290 MET A 291 ARG A 301 MET A 302 SITE 6 AC1 30 GLY A 303 THR A 305 MET A 309 HOH A1103 SITE 7 AC1 30 HOH A1117 HOH A1121 HOH A1143 HOH A1152 SITE 8 AC1 30 HOH A1181 HOH A1291 SITE 1 AC2 30 GLY B 72 GLY B 74 SER B 75 SER B 76 SITE 2 AC2 30 ILE B 96 GLU B 97 SER B 98 SER B 99 SITE 3 AC2 30 GLY B 104 GLY B 105 VAL B 170 ASP B 207 SITE 4 AC2 30 THR B 234 THR B 235 GLY B 236 HIS B 237 SITE 5 AC2 30 GLY B 290 MET B 291 ARG B 301 MET B 302 SITE 6 AC2 30 GLY B 303 THR B 305 MET B 309 HOH B1103 SITE 7 AC2 30 HOH B1117 HOH B1125 HOH B1176 HOH B1183 SITE 8 AC2 30 HOH B1185 HOH B1288 CRYST1 140.696 140.696 73.325 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013638 0.00000