HEADER DE NOVO PROTEIN 30-MAR-06 2GJH TITLE NMR STRUCTURE OF CFR (C-TERMINAL FRAGMENT OF COMPUTATIONALLY DESIGNED TITLE 2 NOVEL-TOPOLOGY PROTEIN TOP7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 3 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET 29B(+) KEYWDS OBLIGATE SYMMETRIC HOMO-DIMER, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.DANTAS REVDAT 4 29-MAY-24 2GJH 1 REMARK REVDAT 3 09-MAR-22 2GJH 1 REMARK REVDAT 2 24-FEB-09 2GJH 1 VERSN REVDAT 1 17-OCT-06 2GJH 0 JRNL AUTH G.DANTAS,A.L.WATTERS,B.M.LUNDE,Z.M.ELETR,N.G.ISERN, JRNL AUTH 2 T.ROSEMAN,J.LIPFERT,S.DONIACH,M.TOMPA,B.KUHLMAN, JRNL AUTH 3 B.L.STODDARD,G.VARANI,D.BAKER JRNL TITL MIS-TRANSLATION OF A COMPUTATIONALLY DESIGNED PROTEIN YIELDS JRNL TITL 2 AN EXCEPTIONALLY STABLE HOMODIMER: IMPLICATIONS FOR PROTEIN JRNL TITL 3 ENGINEERING AND EVOLUTION. JRNL REF J.MOL.BIOL. V. 362 1004 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16949611 JRNL DOI 10.1016/J.JMB.2006.07.092 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037194. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 25MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CFR, 25MM PHOSPHATE BUFFER, REMARK 210 PH 7.0, 90% H2O, 10% D2O; 1MM REMARK 210 CFR, 25MM PHOSPHATE BUFFER, PH REMARK 210 7.0, 100% D2O; 1.0MM CFR U-15N, REMARK 210 13C, 25MM PHOSPHATE BUFFER, PH REMARK 210 7.0, 90% H2O, 10% D2O; 1.0MM CFR REMARK 210 U-15N, 25MM PHOSPHATE BUFFER, PH REMARK 210 7.0, 90% H2O, 10% D2O; 1.4MM CFR REMARK 210 U-15N, 13C, 1.4MM 14N, 12C CFR, REMARK 210 25MM PHOSPHATE BUFFER, PH 7.0, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; 3D_13C-FILTERED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, TALOS, NMRPIPE 2.3, REMARK 210 SPARKY 3.112 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HYDROGEN BOND RESTRAINTS WERE DERIVED FROM D2O PROTECTION REMARK 210 ANALYSIS. TORSION ANGLE RESTRAINTS WERE DERIVED FROM TALOS REMARK 210 PREDICTIONS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 MET B 1 REMARK 465 HIS B 59 REMARK 465 HIS B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 32 35.68 -94.29 REMARK 500 1 ASN A 33 161.08 -49.89 REMARK 500 1 ASP A 34 62.67 68.75 REMARK 500 1 ASP A 42 21.09 -149.25 REMARK 500 1 SER A 54 161.27 63.30 REMARK 500 1 GLU A 56 -170.04 -67.59 REMARK 500 1 TYR B 32 34.68 -94.81 REMARK 500 1 ASP B 34 58.20 70.60 REMARK 500 1 ASP B 42 18.47 -149.14 REMARK 500 1 LEU B 55 65.62 -109.13 REMARK 500 1 HIS B 57 132.59 -179.30 REMARK 500 2 TYR A 32 35.58 -94.84 REMARK 500 2 ASP A 34 58.83 71.02 REMARK 500 2 ASP A 42 19.93 -147.06 REMARK 500 2 HIS A 57 112.22 -179.32 REMARK 500 2 TYR B 32 30.73 -94.60 REMARK 500 2 ASP B 34 56.78 70.09 REMARK 500 2 ASP B 42 12.49 -141.15 REMARK 500 2 GLU B 56 -169.94 -169.31 REMARK 500 2 HIS B 57 144.53 -175.01 REMARK 500 3 TYR A 32 34.62 -93.90 REMARK 500 3 ASP A 34 57.80 70.23 REMARK 500 3 TYR B 32 34.90 -93.84 REMARK 500 3 ASP B 34 57.53 71.55 REMARK 500 3 ASP B 42 18.59 -146.31 REMARK 500 3 LEU B 55 -64.44 -109.60 REMARK 500 3 HIS B 57 139.45 -179.17 REMARK 500 4 TYR A 32 35.21 -94.69 REMARK 500 4 ASP A 34 59.59 70.73 REMARK 500 4 HIS A 57 125.62 -179.49 REMARK 500 4 TYR B 32 35.71 -94.69 REMARK 500 4 ASN B 33 161.57 -49.80 REMARK 500 4 ASP B 34 59.28 70.55 REMARK 500 4 ASP B 42 18.52 -146.95 REMARK 500 4 HIS B 57 146.88 -179.27 REMARK 500 5 TYR A 32 36.39 -94.07 REMARK 500 5 ASN A 33 161.54 -49.04 REMARK 500 5 ASP A 34 57.64 70.31 REMARK 500 5 ASP A 42 21.64 -153.95 REMARK 500 5 THR B 9 73.53 -101.35 REMARK 500 5 TYR B 32 36.56 -94.37 REMARK 500 5 ASN B 33 161.37 -49.23 REMARK 500 5 ASP B 34 58.05 70.53 REMARK 500 5 ASP B 42 18.48 -150.10 REMARK 500 5 GLU B 51 34.44 -97.06 REMARK 500 6 THR A 9 75.95 -103.66 REMARK 500 6 TYR A 32 33.68 -94.67 REMARK 500 6 ASP A 34 61.28 71.26 REMARK 500 6 HIS A 57 149.53 -179.37 REMARK 500 6 THR B 9 74.63 -103.77 REMARK 500 REMARK 500 THIS ENTRY HAS 205 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN HAS BEEN COMPUTATIONALLY DESIGNED. RESIDUES REMARK 999 1, 2, 52-62 WERE ADDED TO THE ORIGINAL PROTEIN CONSTRUCT REMARK 999 TO ALLOW FOR EXPRESSION AND PURIFICATION, INCLUDING A REMARK 999 C-TERMINAL SIX RESIDUE HIS TAG DBREF 2GJH A 1 62 PDB 2GJH 2GJH 1 62 DBREF 2GJH B 1 62 PDB 2GJH 2GJH 1 62 SEQRES 1 A 62 MET GLU ARG VAL ARG ILE SER ILE THR ALA ARG THR LYS SEQRES 2 A 62 LYS GLU ALA GLU LYS PHE ALA ALA ILE LEU ILE LYS VAL SEQRES 3 A 62 PHE ALA GLU LEU GLY TYR ASN ASP ILE ASN VAL THR TRP SEQRES 4 A 62 ASP GLY ASP THR VAL THR VAL GLU GLY GLN LEU GLU GLY SEQRES 5 A 62 GLY SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 62 MET GLU ARG VAL ARG ILE SER ILE THR ALA ARG THR LYS SEQRES 2 B 62 LYS GLU ALA GLU LYS PHE ALA ALA ILE LEU ILE LYS VAL SEQRES 3 B 62 PHE ALA GLU LEU GLY TYR ASN ASP ILE ASN VAL THR TRP SEQRES 4 B 62 ASP GLY ASP THR VAL THR VAL GLU GLY GLN LEU GLU GLY SEQRES 5 B 62 GLY SER LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 12 LEU A 30 1 19 HELIX 2 2 THR B 12 LEU B 30 1 19 SHEET 1 A 6 ASN A 36 TRP A 39 0 SHEET 2 A 6 VAL A 44 GLN A 49 -1 O GLU A 47 N ASN A 36 SHEET 3 A 6 ARG A 3 THR A 9 -1 N ILE A 6 O VAL A 46 SHEET 4 A 6 ARG B 3 THR B 9 -1 O SER B 7 N SER A 7 SHEET 5 A 6 VAL B 44 GLN B 49 -1 O VAL B 46 N ILE B 6 SHEET 6 A 6 ASN B 36 TRP B 39 -1 N ASN B 36 O GLU B 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1