HEADER IMMUNE SYSTEM 31-MAR-06 2GJJ TITLE CRYSTAL STRUCTURE OF A SINGLE CHAIN ANTIBODY SCA21 AGAINST HER2/ERBB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: A21 SINGLE-CHAIN ANTIBODY FRAGMENT AGAINST ERBB2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: A21 FRAGMENT, RESIDUES 1-114 AND 135-254; COMPND 5 SYNONYM: ANTI-P185/HER2 IMMUNOGLOBULIN KAPPA LIGHT CHAIN VARIABLE COMPND 6 REGION, ANIT-P185/HER2 IMMUNOGLOBULIN GAMMA HEAVY CHAIN VARIABLE COMPND 7 REGION; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SCA21; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9K KEYWDS IG FAMILY, SCFV, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHU REVDAT 8 25-OCT-23 2GJJ 1 REMARK SEQADV REVDAT 7 18-OCT-17 2GJJ 1 REMARK REVDAT 6 16-AUG-17 2GJJ 1 REMARK REVDAT 5 09-AUG-17 2GJJ 1 SOURCE REMARK REVDAT 4 13-JUL-11 2GJJ 1 VERSN REVDAT 3 24-FEB-09 2GJJ 1 VERSN REVDAT 2 15-JAN-08 2GJJ 1 JRNL REMARK REVDAT 1 01-OCT-06 2GJJ 0 JRNL AUTH S.HU,Z.ZHU,L.LI,L.CHANG,W.LI,L.CHENG,M.TENG,J.LIU JRNL TITL EPITOPE MAPPING AND STRUCTURAL ANALYSIS OF AN ANTI-ERBB2 JRNL TITL 2 ANTIBODY A21: MOLECULAR BASIS FOR TUMOR INHIBITORY MECHANISM JRNL REF PROTEINS V. 70 938 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17847085 JRNL DOI 10.1002/PROT.21551 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 33345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.008 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.176 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.073 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MAXIMUM LIKELIHOOD REFINEMENT REMARK 4 REMARK 4 2GJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H8N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.97150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.31500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.29600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.97150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.31500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.29600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.97150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.31500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.29600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.97150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.31500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.29600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 884 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -3 REMARK 465 ALA A -2 REMARK 465 GLY A 116 REMARK 465 GLY A 117 REMARK 465 GLY A 118 REMARK 465 SER A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 SER A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 GLU B -3 REMARK 465 ALA B -2 REMARK 465 ARG B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 GLY B 117 REMARK 465 GLY B 118 REMARK 465 SER B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 SER B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -1 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU B -1 CG CD OE1 OE2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 ASN B 33 CG OD1 ND2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 GLN B 196 CG CD OE1 NE2 REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 470 SER B 253 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 51 CE NZ REMARK 480 ARG A 109 NE CZ NH1 NH2 REMARK 480 GLU A 237 CD OE1 OE2 REMARK 480 ARG B 109 CZ NH1 NH2 REMARK 480 GLN B 139 OE1 NE2 REMARK 480 LYS B 177 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 57 -36.45 71.78 REMARK 500 SER A 175 -50.96 -23.63 REMARK 500 ALA A 226 174.14 179.44 REMARK 500 TYR A 236 -124.30 59.48 REMARK 500 LEU B 53 -60.88 -95.26 REMARK 500 ALA B 57 -37.88 74.30 REMARK 500 SER B 219 61.04 37.06 REMARK 500 TYR B 236 -124.21 50.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 264 DBREF 2GJJ A 1 114 GB 19698754 AAL91085 1 114 DBREF 2GJJ A 135 254 GB 19698750 AAL91083 1 120 DBREF 2GJJ B 1 114 GB 19698754 AAL91085 1 114 DBREF 2GJJ B 135 254 GB 19698750 AAL91083 1 120 SEQADV 2GJJ GLU A -3 GB 19698754 EXPRESSION TAG SEQADV 2GJJ ALA A -2 GB 19698754 EXPRESSION TAG SEQADV 2GJJ GLU A -1 GB 19698754 EXPRESSION TAG SEQADV 2GJJ ALA A 0 GB 19698754 EXPRESSION TAG SEQADV 2GJJ GLY A 115 GB 19698754 LINKER SEQADV 2GJJ GLY A 116 GB 19698754 LINKER SEQADV 2GJJ GLY A 117 GB 19698754 LINKER SEQADV 2GJJ GLY A 118 GB 19698754 LINKER SEQADV 2GJJ SER A 119 GB 19698754 LINKER SEQADV 2GJJ GLY A 120 GB 19698754 LINKER SEQADV 2GJJ GLY A 121 GB 19698754 LINKER SEQADV 2GJJ GLY A 122 GB 19698754 LINKER SEQADV 2GJJ GLY A 123 GB 19698754 LINKER SEQADV 2GJJ SER A 124 GB 19698754 LINKER SEQADV 2GJJ GLY A 125 GB 19698754 LINKER SEQADV 2GJJ GLY A 126 GB 19698754 LINKER SEQADV 2GJJ GLY A 127 GB 19698754 LINKER SEQADV 2GJJ GLY A 128 GB 19698754 LINKER SEQADV 2GJJ SER A 129 GB 19698754 LINKER SEQADV 2GJJ GLY A 130 GB 19698754 LINKER SEQADV 2GJJ GLY A 131 GB 19698754 LINKER SEQADV 2GJJ GLY A 132 GB 19698754 LINKER SEQADV 2GJJ GLY A 133 GB 19698754 LINKER SEQADV 2GJJ SER A 134 GB 19698754 LINKER SEQADV 2GJJ LEU A 138 GB 19698750 VAL 4 CONFLICT SEQADV 2GJJ ASP A 227 GB 19698750 VAL 93 CONFLICT SEQADV 2GJJ HIS A 255 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS A 256 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS A 257 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS A 258 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS A 259 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS A 260 GB 19698750 EXPRESSION TAG SEQADV 2GJJ GLU B -3 GB 19698754 EXPRESSION TAG SEQADV 2GJJ ALA B -2 GB 19698754 EXPRESSION TAG SEQADV 2GJJ GLU B -1 GB 19698754 EXPRESSION TAG SEQADV 2GJJ ALA B 0 GB 19698754 EXPRESSION TAG SEQADV 2GJJ GLY B 115 GB 19698754 LINKER SEQADV 2GJJ GLY B 116 GB 19698754 LINKER SEQADV 2GJJ GLY B 117 GB 19698754 LINKER SEQADV 2GJJ GLY B 118 GB 19698754 LINKER SEQADV 2GJJ SER B 119 GB 19698754 LINKER SEQADV 2GJJ GLY B 120 GB 19698754 LINKER SEQADV 2GJJ GLY B 121 GB 19698754 LINKER SEQADV 2GJJ GLY B 122 GB 19698754 LINKER SEQADV 2GJJ GLY B 123 GB 19698754 LINKER SEQADV 2GJJ SER B 124 GB 19698754 LINKER SEQADV 2GJJ GLY B 125 GB 19698754 LINKER SEQADV 2GJJ GLY B 126 GB 19698754 LINKER SEQADV 2GJJ GLY B 127 GB 19698754 LINKER SEQADV 2GJJ GLY B 128 GB 19698754 LINKER SEQADV 2GJJ SER B 129 GB 19698754 LINKER SEQADV 2GJJ GLY B 130 GB 19698754 LINKER SEQADV 2GJJ GLY B 131 GB 19698754 LINKER SEQADV 2GJJ GLY B 132 GB 19698754 LINKER SEQADV 2GJJ GLY B 133 GB 19698754 LINKER SEQADV 2GJJ SER B 134 GB 19698754 LINKER SEQADV 2GJJ LEU B 138 GB 19698750 VAL 4 CONFLICT SEQADV 2GJJ ASP B 227 GB 19698750 VAL 93 CONFLICT SEQADV 2GJJ HIS B 255 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS B 256 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS B 257 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS B 258 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS B 259 GB 19698750 EXPRESSION TAG SEQADV 2GJJ HIS B 260 GB 19698750 EXPRESSION TAG SEQRES 1 A 264 GLU ALA GLU ALA ASP ILE VAL LEU THR GLN THR PRO SER SEQRES 2 A 264 SER LEU PRO VAL SER VAL GLY GLU LYS VAL THR MET THR SEQRES 3 A 264 CYS LYS SER SER GLN THR LEU LEU TYR SER ASN ASN GLN SEQRES 4 A 264 LYS ASN TYR LEU ALA TRP TYR GLN GLN LYS PRO GLY GLN SEQRES 5 A 264 SER PRO LYS LEU LEU ILE SER TRP ALA PHE THR ARG LYS SEQRES 6 A 264 SER GLY VAL PRO ASP ARG PHE THR GLY SER GLY SER GLY SEQRES 7 A 264 THR ASP PHE THR LEU THR ILE GLY SER VAL LYS ALA GLU SEQRES 8 A 264 ASP LEU ALA VAL TYR TYR CYS GLN GLN TYR SER ASN TYR SEQRES 9 A 264 PRO TRP THR PHE GLY GLY GLY THR ARG LEU GLU ILE LYS SEQRES 10 A 264 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 11 A 264 GLY GLY SER GLY GLY GLY GLY SER GLU VAL GLN LEU GLN SEQRES 12 A 264 GLN SER GLY PRO GLU VAL VAL LYS THR GLY ALA SER VAL SEQRES 13 A 264 LYS ILE SER CYS LYS ALA SER GLY TYR SER PHE THR GLY SEQRES 14 A 264 TYR PHE ILE ASN TRP VAL LYS LYS ASN SER GLY LYS SER SEQRES 15 A 264 PRO GLU TRP ILE GLY HIS ILE SER SER SER TYR ALA THR SEQRES 16 A 264 SER THR TYR ASN GLN LYS PHE LYS ASN LYS ALA ALA PHE SEQRES 17 A 264 THR VAL ASP THR SER SER SER THR ALA PHE MET GLN LEU SEQRES 18 A 264 ASN SER LEU THR SER GLU ASP SER ALA ASP TYR TYR CYS SEQRES 19 A 264 VAL ARG SER GLY ASN TYR GLU GLU TYR ALA MET ASP TYR SEQRES 20 A 264 TRP GLY GLN GLY THR SER VAL THR VAL SER SER HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS SEQRES 1 B 264 GLU ALA GLU ALA ASP ILE VAL LEU THR GLN THR PRO SER SEQRES 2 B 264 SER LEU PRO VAL SER VAL GLY GLU LYS VAL THR MET THR SEQRES 3 B 264 CYS LYS SER SER GLN THR LEU LEU TYR SER ASN ASN GLN SEQRES 4 B 264 LYS ASN TYR LEU ALA TRP TYR GLN GLN LYS PRO GLY GLN SEQRES 5 B 264 SER PRO LYS LEU LEU ILE SER TRP ALA PHE THR ARG LYS SEQRES 6 B 264 SER GLY VAL PRO ASP ARG PHE THR GLY SER GLY SER GLY SEQRES 7 B 264 THR ASP PHE THR LEU THR ILE GLY SER VAL LYS ALA GLU SEQRES 8 B 264 ASP LEU ALA VAL TYR TYR CYS GLN GLN TYR SER ASN TYR SEQRES 9 B 264 PRO TRP THR PHE GLY GLY GLY THR ARG LEU GLU ILE LYS SEQRES 10 B 264 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 11 B 264 GLY GLY SER GLY GLY GLY GLY SER GLU VAL GLN LEU GLN SEQRES 12 B 264 GLN SER GLY PRO GLU VAL VAL LYS THR GLY ALA SER VAL SEQRES 13 B 264 LYS ILE SER CYS LYS ALA SER GLY TYR SER PHE THR GLY SEQRES 14 B 264 TYR PHE ILE ASN TRP VAL LYS LYS ASN SER GLY LYS SER SEQRES 15 B 264 PRO GLU TRP ILE GLY HIS ILE SER SER SER TYR ALA THR SEQRES 16 B 264 SER THR TYR ASN GLN LYS PHE LYS ASN LYS ALA ALA PHE SEQRES 17 B 264 THR VAL ASP THR SER SER SER THR ALA PHE MET GLN LEU SEQRES 18 B 264 ASN SER LEU THR SER GLU ASP SER ALA ASP TYR TYR CYS SEQRES 19 B 264 VAL ARG SER GLY ASN TYR GLU GLU TYR ALA MET ASP TYR SEQRES 20 B 264 TRP GLY GLN GLY THR SER VAL THR VAL SER SER HIS HIS SEQRES 21 B 264 HIS HIS HIS HIS HET GOL A 261 6 HET GOL A 262 6 HET GOL A 263 6 HET GOL A 264 6 HET GOL B 261 6 HET GOL B 262 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *396(H2 O) HELIX 1 1 LYS A 85 LEU A 89 5 5 HELIX 2 2 SER A 162 GLY A 165 5 4 HELIX 3 3 GLN A 196 LYS A 199 5 4 HELIX 4 4 THR A 221 SER A 225 5 5 HELIX 5 5 ASN A 235 TYR A 239 5 5 HELIX 6 6 LYS B 85 LEU B 89 5 5 HELIX 7 7 SER B 162 GLY B 165 5 4 HELIX 8 8 GLN B 196 LYS B 199 5 4 HELIX 9 9 THR B 208 SER B 210 5 3 HELIX 10 10 THR B 221 SER B 225 5 5 HELIX 11 11 ASN B 235 TYR B 239 5 5 SHEET 1 A 4 LEU A 4 THR A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O THR A 22 N THR A 7 SHEET 3 A 4 ASP A 76 ILE A 81 -1 O PHE A 77 N CYS A 23 SHEET 4 A 4 PHE A 68 SER A 73 -1 N THR A 69 O THR A 80 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 108 LYS A 113 1 O GLU A 111 N VAL A 13 SHEET 3 B 6 ALA A 90 GLN A 96 -1 N ALA A 90 O LEU A 110 SHEET 4 B 6 LEU A 39 GLN A 44 -1 N TYR A 42 O TYR A 93 SHEET 5 B 6 LYS A 51 SER A 55 -1 O LYS A 51 N GLN A 43 SHEET 6 B 6 THR A 59 ARG A 60 -1 O THR A 59 N SER A 55 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 108 LYS A 113 1 O GLU A 111 N VAL A 13 SHEET 3 C 4 ALA A 90 GLN A 96 -1 N ALA A 90 O LEU A 110 SHEET 4 C 4 THR A 103 PHE A 104 -1 O THR A 103 N GLN A 96 SHEET 1 D 4 GLN A 137 GLN A 140 0 SHEET 2 D 4 VAL A 152 SER A 159 -1 O LYS A 157 N GLN A 139 SHEET 3 D 4 THR A 212 LEU A 217 -1 O ALA A 213 N CYS A 156 SHEET 4 D 4 ALA A 202 ASP A 207 -1 N ASP A 207 O THR A 212 SHEET 1 E 6 GLU A 144 VAL A 146 0 SHEET 2 E 6 THR A 248 VAL A 252 1 O THR A 251 N GLU A 144 SHEET 3 E 6 ALA A 226 SER A 233 -1 N ALA A 226 O VAL A 250 SHEET 4 E 6 PHE A 167 LYS A 173 -1 N ASN A 169 O VAL A 231 SHEET 5 E 6 GLU A 180 SER A 186 -1 O GLU A 180 N LYS A 172 SHEET 6 E 6 SER A 192 TYR A 194 -1 O THR A 193 N HIS A 184 SHEET 1 F 4 LEU B 4 THR B 7 0 SHEET 2 F 4 VAL B 19 SER B 25 -1 O LYS B 24 N THR B 5 SHEET 3 F 4 ASP B 76 ILE B 81 -1 O PHE B 77 N CYS B 23 SHEET 4 F 4 PHE B 68 SER B 73 -1 N THR B 69 O THR B 80 SHEET 1 G 6 SER B 10 VAL B 13 0 SHEET 2 G 6 THR B 108 ILE B 112 1 O ARG B 109 N LEU B 11 SHEET 3 G 6 VAL B 91 GLN B 96 -1 N TYR B 92 O THR B 108 SHEET 4 G 6 LEU B 39 GLN B 44 -1 N TYR B 42 O TYR B 93 SHEET 5 G 6 LYS B 51 SER B 55 -1 O ILE B 54 N TRP B 41 SHEET 6 G 6 THR B 59 ARG B 60 -1 O THR B 59 N SER B 55 SHEET 1 H 4 SER B 10 VAL B 13 0 SHEET 2 H 4 THR B 108 ILE B 112 1 O ARG B 109 N LEU B 11 SHEET 3 H 4 VAL B 91 GLN B 96 -1 N TYR B 92 O THR B 108 SHEET 4 H 4 THR B 103 PHE B 104 -1 O THR B 103 N GLN B 96 SHEET 1 I 4 GLN B 137 GLN B 140 0 SHEET 2 I 4 VAL B 152 SER B 159 -1 O LYS B 157 N GLN B 139 SHEET 3 I 4 THR B 212 LEU B 217 -1 O MET B 215 N ILE B 154 SHEET 4 I 4 ALA B 202 ASP B 207 -1 N THR B 205 O PHE B 214 SHEET 1 J 6 GLU B 144 VAL B 146 0 SHEET 2 J 6 THR B 248 VAL B 252 1 O SER B 249 N GLU B 144 SHEET 3 J 6 ALA B 226 SER B 233 -1 N ALA B 226 O VAL B 250 SHEET 4 J 6 PHE B 167 LYS B 173 -1 N ASN B 169 O VAL B 231 SHEET 5 J 6 GLU B 180 SER B 186 -1 O GLU B 180 N LYS B 172 SHEET 6 J 6 SER B 192 TYR B 194 -1 O THR B 193 N HIS B 184 SHEET 1 K 4 GLU B 144 VAL B 146 0 SHEET 2 K 4 THR B 248 VAL B 252 1 O SER B 249 N GLU B 144 SHEET 3 K 4 ALA B 226 SER B 233 -1 N ALA B 226 O VAL B 250 SHEET 4 K 4 MET B 241 TRP B 244 -1 O TYR B 243 N ARG B 232 SSBOND 1 CYS A 23 CYS A 94 1555 1555 2.04 SSBOND 2 CYS A 156 CYS A 230 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 94 1555 1555 2.03 SSBOND 4 CYS B 156 CYS B 230 1555 1555 2.04 CISPEP 1 THR A 7 PRO A 8 0 -6.88 CISPEP 2 TYR A 100 PRO A 101 0 -6.65 CISPEP 3 THR B 7 PRO B 8 0 -15.34 CISPEP 4 TYR B 100 PRO B 101 0 -4.68 SITE 1 AC1 9 THR B 164 TYR B 166 PHE B 167 SER B 186 SITE 2 AC1 9 SER B 187 SER B 188 TYR B 189 ASN B 235 SITE 3 AC1 9 HOH B 501 SITE 1 AC2 6 GLN B 43 LYS B 45 PRO B 65 PHE B 68 SITE 2 AC2 6 GLU B 87 ASP B 88 SITE 1 AC3 9 THR A 164 GLY A 165 TYR A 166 PHE A 167 SITE 2 AC3 9 SER A 186 SER A 187 SER A 188 TYR A 189 SITE 3 AC3 9 ASN A 235 SITE 1 AC4 6 GLN A 43 LYS A 45 PRO A 65 PHE A 68 SITE 2 AC4 6 HOH A 505 HOH A 585 SITE 1 AC5 11 SER A 225 ALA A 226 ASP A 227 SER A 249 SITE 2 AC5 11 VAL A 250 THR A 251 HOH A 823 THR B 148 SITE 3 AC5 11 GLY B 149 ALA B 150 HOH B 867 SITE 1 AC6 7 LYS A 61 GLU A 238 ASP A 242 HOH A 554 SITE 2 AC6 7 HOH A 587 HOH A 635 HOH A 841 CRYST1 73.943 86.630 178.592 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013524 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005599 0.00000