HEADER SIGNALING PROTEIN 31-MAR-06 2GJS TITLE THE CRYSTAL STRUCTURE OF HUMAN RRAD IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN RAD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RAS ASSOCIATED WITH DIABETES, RAD1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RRAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS RRAD, GDP/GTP BINDING, GTP HYDROLYSIS, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.P.TURNBULL,X.YANG,M.SOUNDARARAJAN,G.SCHOCH,J.DEBRECZENI,J.M.ELKINS, AUTHOR 2 C.GILEADI,G.BERRIDGE,N.PANTIC,N.BURGESS,C.E.A.SMEE,J.BRAY,F.VON AUTHOR 3 DELFT,J.WEIGELT,A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,D.DOYLE, AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 03-APR-24 2GJS 1 REMARK REVDAT 4 14-FEB-24 2GJS 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2GJS 1 VERSN REVDAT 2 24-FEB-09 2GJS 1 VERSN REVDAT 1 11-APR-06 2GJS 0 JRNL AUTH A.P.TURNBULL,X.YANG,M.SOUNDARARAJAN,G.SCHOCH,J.DEBRECZENI, JRNL AUTH 2 J.M.ELKINS,C.GILEADI,G.BERRIDGE,N.PANTIC,N.BURGESS, JRNL AUTH 3 C.E.A.SMEE,J.BRAY,F.VON DELFT,J.WEIGELT,A.EDWARDS, JRNL AUTH 4 C.ARROWSMITH,M.SUNDSTROM,D.DOYLE JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN RRAD IN COMPLEX WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2311 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1553 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3132 ; 1.605 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3755 ; 0.948 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 6.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;35.476 ;22.292 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;15.697 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.429 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2532 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 494 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 404 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1577 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1100 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1289 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.324 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.329 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.550 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1471 ; 1.010 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 600 ; 0.235 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2287 ; 1.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 2.280 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 840 ; 3.466 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7146 35.9884 20.9079 REMARK 3 T TENSOR REMARK 3 T11: 0.2273 T22: 0.0308 REMARK 3 T33: 0.1819 T12: -0.0151 REMARK 3 T13: -0.0446 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.5949 L22: 1.6641 REMARK 3 L33: 4.4193 L12: -0.2852 REMARK 3 L13: 1.2507 L23: -0.7024 REMARK 3 S TENSOR REMARK 3 S11: -0.1706 S12: 0.0128 S13: 0.5299 REMARK 3 S21: 0.1414 S22: -0.1066 S23: -0.3213 REMARK 3 S31: -0.4423 S32: 0.4459 S33: 0.2772 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 49.5696 28.2385 13.2821 REMARK 3 T TENSOR REMARK 3 T11: 0.0192 T22: -0.1332 REMARK 3 T33: -0.1045 T12: 0.0477 REMARK 3 T13: 0.0221 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.3257 L22: 2.9081 REMARK 3 L33: 5.4739 L12: 0.1746 REMARK 3 L13: 0.7502 L23: -0.9441 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: 0.3051 S13: 0.0843 REMARK 3 S21: -0.3074 S22: -0.0755 S23: -0.2209 REMARK 3 S31: 0.1382 S32: 0.4499 S33: 0.1327 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 172 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3462 28.3324 -14.7163 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.3235 REMARK 3 T33: 0.0791 T12: 0.0084 REMARK 3 T13: -0.0246 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 6.1784 L22: 2.4122 REMARK 3 L33: 5.2283 L12: -0.1250 REMARK 3 L13: 2.3274 L23: -0.2341 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.1363 S13: 0.2098 REMARK 3 S21: -0.0615 S22: 0.0588 S23: 0.5728 REMARK 3 S31: -0.0939 S32: -1.3975 S33: -0.1156 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 173 B 256 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6705 24.2177 -7.3988 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: -0.0181 REMARK 3 T33: -0.1015 T12: -0.0542 REMARK 3 T13: 0.0201 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.2351 L22: 2.9672 REMARK 3 L33: 5.8980 L12: -0.7631 REMARK 3 L13: -0.5758 L23: -0.7086 REMARK 3 S TENSOR REMARK 3 S11: -0.1741 S12: -0.1992 S13: 0.0458 REMARK 3 S21: 0.3207 S22: 0.1512 S23: 0.1905 REMARK 3 S31: 0.2482 S32: -0.7122 S33: 0.0229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SWISSMODEL (FIRST APPROACH MODE) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M SODIUM MALATE, 20% (W/V) PEG REMARK 280 3350, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 85 REMARK 465 MET A 86 REMARK 465 SER A 87 REMARK 465 ASP A 88 REMARK 465 GLU A 89 REMARK 465 SER A 90 REMARK 465 GLU A 115 REMARK 465 ASP A 116 REMARK 465 GLY A 117 REMARK 465 PRO A 118 REMARK 465 GLU A 119 REMARK 465 ALA A 120 REMARK 465 GLU A 121 REMARK 465 ALA A 122 REMARK 465 ALA A 123 REMARK 465 GLU A 147 REMARK 465 GLN A 148 REMARK 465 ASP A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 ARG A 152 REMARK 465 TRP A 153 REMARK 465 THR A 193 REMARK 465 ASP A 194 REMARK 465 GLU A 259 REMARK 465 ALA A 260 REMARK 465 SER B 85 REMARK 465 MET B 86 REMARK 465 SER B 87 REMARK 465 ASP B 88 REMARK 465 GLU B 89 REMARK 465 SER B 90 REMARK 465 ASP B 116 REMARK 465 GLY B 117 REMARK 465 PRO B 118 REMARK 465 GLU B 119 REMARK 465 ALA B 120 REMARK 465 GLU B 121 REMARK 465 ALA B 122 REMARK 465 ALA B 123 REMARK 465 GLY B 124 REMARK 465 TRP B 146 REMARK 465 GLU B 147 REMARK 465 GLN B 148 REMARK 465 ASP B 149 REMARK 465 GLY B 150 REMARK 465 GLY B 151 REMARK 465 ARG B 152 REMARK 465 TRP B 153 REMARK 465 LEU B 154 REMARK 465 PRO B 155 REMARK 465 GLY B 156 REMARK 465 HIS B 157 REMARK 465 CYS B 158 REMARK 465 MET B 159 REMARK 465 ALA B 160 REMARK 465 GLN B 192 REMARK 465 THR B 193 REMARK 465 ASP B 194 REMARK 465 SER B 257 REMARK 465 LYS B 258 REMARK 465 GLU B 259 REMARK 465 ALA B 260 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 137 CD OE1 OE2 REMARK 470 ARG A 189 CZ NH1 NH2 REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 ARG A 254 CZ NH1 NH2 REMARK 470 LYS A 258 CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 ASP B 128 OD1 OD2 REMARK 470 SER B 130 OG REMARK 470 VAL B 132 CB CG1 CG2 REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 SER B 139 OG REMARK 470 LYS B 179 NZ REMARK 470 ARG B 189 CD NE CZ NH1 NH2 REMARK 470 ARG B 191 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1186 O HOH A 1193 1.26 REMARK 500 MG MG A 1 O HOH A 1193 1.37 REMARK 500 O HOH A 1225 O HOH A 1226 2.16 REMARK 500 OG SER A 181 O HOH A 1220 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 133.09 179.89 REMARK 500 ARG A 129 134.61 178.78 REMARK 500 LYS A 204 34.94 74.98 REMARK 500 LYS B 204 30.59 80.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 160 MET A 161 -148.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 105 OG REMARK 620 2 GDP A1184 O2B 93.0 REMARK 620 3 HOH A1186 O 83.2 86.8 REMARK 620 4 HOH A1203 O 94.3 99.7 173.1 REMARK 620 5 HOH A1207 O 88.1 174.4 87.8 85.7 REMARK 620 6 HOH A1211 O 174.4 89.3 91.8 90.3 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 105 OG REMARK 620 2 GDP B1184 O2B 87.1 REMARK 620 3 HOH B1203 O 80.3 100.4 REMARK 620 4 HOH B1204 O 93.8 88.5 169.0 REMARK 620 5 HOH B1205 O 88.1 174.5 76.3 94.3 REMARK 620 6 HOH B1214 O 172.9 97.2 93.4 91.9 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 1184 DBREF 2GJS A 87 260 UNP P55042 RAD_HUMAN 85 260 DBREF 2GJS B 87 260 UNP P55042 RAD_HUMAN 85 260 SEQADV 2GJS SER A 85 UNP P55042 CLONING ARTIFACT SEQADV 2GJS MET A 86 UNP P55042 CLONING ARTIFACT SEQADV 2GJS SER B 85 UNP P55042 CLONING ARTIFACT SEQADV 2GJS MET B 86 UNP P55042 CLONING ARTIFACT SEQRES 1 A 176 SER MET SER ASP GLU SER VAL TYR LYS VAL LEU LEU LEU SEQRES 2 A 176 GLY ALA PRO GLY VAL GLY LYS SER ALA LEU ALA ARG ILE SEQRES 3 A 176 PHE GLY GLY VAL GLU ASP GLY PRO GLU ALA GLU ALA ALA SEQRES 4 A 176 GLY HIS THR TYR ASP ARG SER ILE VAL VAL ASP GLY GLU SEQRES 5 A 176 GLU ALA SER LEU MET VAL TYR ASP ILE TRP GLU GLN ASP SEQRES 6 A 176 GLY GLY ARG TRP LEU PRO GLY HIS CYS MET ALA MET GLY SEQRES 7 A 176 ASP ALA TYR VAL ILE VAL TYR SER VAL THR ASP LYS GLY SEQRES 8 A 176 SER PHE GLU LYS ALA SER GLU LEU ARG VAL GLN LEU ARG SEQRES 9 A 176 ARG ALA ARG GLN THR ASP ASP VAL PRO ILE ILE LEU VAL SEQRES 10 A 176 GLY ASN LYS SER ASP LEU VAL ARG SER ARG GLU VAL SER SEQRES 11 A 176 VAL ASP GLU GLY ARG ALA CYS ALA VAL VAL PHE ASP CYS SEQRES 12 A 176 LYS PHE ILE GLU THR SER ALA ALA LEU HIS HIS ASN VAL SEQRES 13 A 176 GLN ALA LEU PHE GLU GLY VAL VAL ARG GLN ILE ARG LEU SEQRES 14 A 176 ARG ARG ASP SER LYS GLU ALA SEQRES 1 B 176 SER MET SER ASP GLU SER VAL TYR LYS VAL LEU LEU LEU SEQRES 2 B 176 GLY ALA PRO GLY VAL GLY LYS SER ALA LEU ALA ARG ILE SEQRES 3 B 176 PHE GLY GLY VAL GLU ASP GLY PRO GLU ALA GLU ALA ALA SEQRES 4 B 176 GLY HIS THR TYR ASP ARG SER ILE VAL VAL ASP GLY GLU SEQRES 5 B 176 GLU ALA SER LEU MET VAL TYR ASP ILE TRP GLU GLN ASP SEQRES 6 B 176 GLY GLY ARG TRP LEU PRO GLY HIS CYS MET ALA MET GLY SEQRES 7 B 176 ASP ALA TYR VAL ILE VAL TYR SER VAL THR ASP LYS GLY SEQRES 8 B 176 SER PHE GLU LYS ALA SER GLU LEU ARG VAL GLN LEU ARG SEQRES 9 B 176 ARG ALA ARG GLN THR ASP ASP VAL PRO ILE ILE LEU VAL SEQRES 10 B 176 GLY ASN LYS SER ASP LEU VAL ARG SER ARG GLU VAL SER SEQRES 11 B 176 VAL ASP GLU GLY ARG ALA CYS ALA VAL VAL PHE ASP CYS SEQRES 12 B 176 LYS PHE ILE GLU THR SER ALA ALA LEU HIS HIS ASN VAL SEQRES 13 B 176 GLN ALA LEU PHE GLU GLY VAL VAL ARG GLN ILE ARG LEU SEQRES 14 B 176 ARG ARG ASP SER LYS GLU ALA HET MG A 1 1 HET GDP A1184 28 HET MG B 1 1 HET GDP B1184 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *80(H2 O) HELIX 1 1 GLY A 103 GLY A 113 1 11 HELIX 2 2 LEU A 154 ALA A 160 1 7 HELIX 3 3 ASP A 173 ARG A 191 1 19 HELIX 4 4 LEU A 207 ARG A 211 5 5 HELIX 5 5 SER A 214 ASP A 226 1 13 HELIX 6 6 ASN A 239 LYS A 258 1 20 HELIX 7 7 GLY B 103 GLY B 113 1 11 HELIX 8 8 ASP B 173 ARG B 191 1 19 HELIX 9 9 LEU B 207 ARG B 211 5 5 HELIX 10 10 SER B 214 ASP B 226 1 13 HELIX 11 11 ASN B 239 ASP B 256 1 18 SHEET 1 A 6 HIS A 125 VAL A 133 0 SHEET 2 A 6 GLU A 136 ASP A 144 -1 O ALA A 138 N ILE A 131 SHEET 3 A 6 TYR A 92 LEU A 97 1 N TYR A 92 O MET A 141 SHEET 4 A 6 ALA A 164 SER A 170 1 O VAL A 166 N LEU A 97 SHEET 5 A 6 ILE A 198 ASN A 203 1 O ASN A 203 N TYR A 169 SHEET 6 A 6 LYS A 228 GLU A 231 1 O LYS A 228 N LEU A 200 SHEET 1 B 6 THR B 126 VAL B 133 0 SHEET 2 B 6 GLU B 136 TYR B 143 -1 O ALA B 138 N ILE B 131 SHEET 3 B 6 TYR B 92 LEU B 97 1 N TYR B 92 O MET B 141 SHEET 4 B 6 ALA B 164 SER B 170 1 O VAL B 168 N LEU B 97 SHEET 5 B 6 ILE B 198 ASN B 203 1 O ASN B 203 N TYR B 169 SHEET 6 B 6 LYS B 228 GLU B 231 1 O LYS B 228 N LEU B 200 LINK MG MG A 1 OG SER A 105 1555 1555 1.98 LINK MG MG A 1 O2B GDP A1184 1555 1555 2.10 LINK MG MG A 1 O HOH A1186 1555 1555 2.57 LINK MG MG A 1 O HOH A1203 1555 1555 2.04 LINK MG MG A 1 O HOH A1207 1555 1555 2.25 LINK MG MG A 1 O HOH A1211 1555 1555 2.00 LINK MG MG B 1 OG SER B 105 1555 1555 2.16 LINK MG MG B 1 O2B GDP B1184 1555 1555 2.13 LINK MG MG B 1 O HOH B1203 1555 1555 2.30 LINK MG MG B 1 O HOH B1204 1555 1555 1.95 LINK MG MG B 1 O HOH B1205 1555 1555 2.20 LINK MG MG B 1 O HOH B1214 1555 1555 1.81 SITE 1 AC1 7 SER A 105 GDP A1184 HOH A1186 HOH A1193 SITE 2 AC1 7 HOH A1203 HOH A1207 HOH A1211 SITE 1 AC2 6 SER B 105 GDP B1184 HOH B1203 HOH B1204 SITE 2 AC2 6 HOH B1205 HOH B1214 SITE 1 AC3 23 MG A 1 GLY A 101 VAL A 102 GLY A 103 SITE 2 AC3 23 LYS A 104 SER A 105 ALA A 106 ASN A 203 SITE 3 AC3 23 LYS A 204 ASP A 206 LEU A 207 SER A 233 SITE 4 AC3 23 ALA A 234 ALA A 235 HOH A1193 HOH A1203 SITE 5 AC3 23 HOH A1211 HOH A1213 HOH A1217 ASP B 206 SITE 6 AC3 23 LEU B 207 GDP B1184 HOH B1193 SITE 1 AC4 19 GDP A1184 HOH A1224 MG B 1 GLY B 101 SITE 2 AC4 19 VAL B 102 GLY B 103 LYS B 104 SER B 105 SITE 3 AC4 19 ALA B 106 ASN B 203 LYS B 204 ASP B 206 SITE 4 AC4 19 LEU B 207 SER B 233 ALA B 234 ALA B 235 SITE 5 AC4 19 HOH B1203 HOH B1204 HOH B1214 CRYST1 51.427 58.560 53.603 90.00 97.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019445 0.000000 0.002450 0.00000 SCALE2 0.000000 0.017077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018803 0.00000