HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-06 2GJU TITLE CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH1004 FROM PYROCOCCUS TITLE 2 HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 252AA LONG HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS BETA BARREL, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.YAMAMOTO,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2GJU 1 REMARK LINK REVDAT 3 13-JUL-11 2GJU 1 VERSN REVDAT 2 24-FEB-09 2GJU 1 VERSN REVDAT 1 10-OCT-06 2GJU 0 JRNL AUTH H.YAMAMOTO,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH1004 FROM JRNL TITL 2 PYROCOCCUS HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3998810.950 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 91840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4608 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 13753 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 705 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 1039 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.33000 REMARK 3 B22 (A**2) : 6.36000 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 52.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : 0.25600 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: 1NNW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 10% PEG 8000, MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.87100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.78550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.87100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.78550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 99.74200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3262 LIES ON A SPECIAL POSITION. REMARK 375 HOH D3234 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 -60.60 -109.17 REMARK 500 PRO A 48 20.88 -64.86 REMARK 500 ARG A 177 -18.23 67.38 REMARK 500 PRO B 48 20.98 -63.74 REMARK 500 ARG B 177 11.97 55.98 REMARK 500 ALA B 212 -9.79 -58.02 REMARK 500 PRO C 48 21.88 -62.12 REMARK 500 PRO C 87 34.89 -94.97 REMARK 500 ARG C 177 -20.90 71.29 REMARK 500 PRO D 48 21.57 -64.67 REMARK 500 ARG D 177 -14.96 68.48 REMARK 500 ASP D 181 80.57 -152.31 REMARK 500 ALA D 200 -159.47 -155.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 166 O REMARK 620 2 TYR A 168 O 90.0 REMARK 620 3 TYR A 186 O 96.8 89.8 REMARK 620 4 HOH A3060 O 91.7 176.3 93.2 REMARK 620 5 HOH A3065 O 155.2 112.4 93.7 65.3 REMARK 620 6 HOH A3073 O 85.3 83.8 173.2 93.1 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B2002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 166 O REMARK 620 2 TYR B 168 O 89.5 REMARK 620 3 TYR B 186 O 98.9 90.5 REMARK 620 4 HOH B3033 O 81.7 83.3 173.9 REMARK 620 5 HOH B3226 O 150.2 118.2 92.0 90.4 REMARK 620 6 HOH B3227 O 91.1 178.1 91.1 95.0 60.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C2003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS C 166 O REMARK 620 2 TYR C 168 O 92.6 REMARK 620 3 TYR C 186 O 98.3 88.4 REMARK 620 4 HOH C3057 O 80.6 92.2 178.7 REMARK 620 5 HOH C3108 O 153.8 112.3 90.8 90.0 REMARK 620 6 HOH C3109 O 97.4 169.8 92.1 87.6 57.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D2004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS D 166 O REMARK 620 2 TYR D 168 O 89.0 REMARK 620 3 TYR D 186 O 92.9 88.9 REMARK 620 4 HOH D3020 O 80.3 95.2 171.9 REMARK 620 5 HOH D3037 O 155.5 113.6 96.7 88.0 REMARK 620 6 HOH D3064 O 89.0 176.1 87.8 87.7 69.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 3006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 3007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001004.1 RELATED DB: TARGETDB DBREF 2GJU A 1 252 UNP O58732 O58732_PYRHO 1 252 DBREF 2GJU B 1 252 UNP O58732 O58732_PYRHO 1 252 DBREF 2GJU C 1 252 UNP O58732 O58732_PYRHO 1 252 DBREF 2GJU D 1 252 UNP O58732 O58732_PYRHO 1 252 SEQRES 1 A 252 MET VAL TYR VAL ALA VAL LEU ALA ASN ILE ALA GLY ASN SEQRES 2 A 252 PHE PRO ALA LEU THR ALA ALA LEU GLU LYS ILE GLU GLU SEQRES 3 A 252 LEU LYS GLU GLU GLY TYR GLU ILE GLU LYS TYR TYR ILE SEQRES 4 A 252 LEU GLY ASN ILE VAL GLY LEU PHE PRO TYR PRO ARG GLU SEQRES 5 A 252 VAL ILE GLU ALA ILE LYS ASN LEU ALA LYS THR SER ASN SEQRES 6 A 252 VAL LYS VAL ILE ARG GLY LYS TYR ASP GLN LEU ILE ALA SEQRES 7 A 252 MET SER ASP PRO HIS ALA GLY ASP PRO LYS TYR ILE ASP SEQRES 8 A 252 LYS LEU GLU ILE PRO ASP HIS LEU LYS ALA THR LEU LYS SEQRES 9 A 252 TYR THR TRP GLU LYS LEU GLY HIS GLU GLY ARG GLU TYR SEQRES 10 A 252 LEU ARG ASP LEU PRO ILE TYR LEU VAL ASP LYS ILE GLY SEQRES 11 A 252 LYS ASN GLU ILE PHE GLY VAL TYR GLY SER PRO VAL ASN SEQRES 12 A 252 PRO PHE ASP GLY GLU ILE LEU PRO ASP GLN PRO THR SER SEQRES 13 A 252 TYR TYR GLU ALA ILE MET ARG PRO VAL LYS GLU TYR GLU SEQRES 14 A 252 MET LEU LEU VAL ALA SER PRO ARG TYR PRO LEU ASP ALA SEQRES 15 A 252 MET THR MET TYR GLY ARG VAL VAL CYS PRO GLY SER ILE SEQRES 16 A 252 GLY PHE PRO PRO ALA ARG GLU HIS LYS ALA THR PHE ALA SEQRES 17 A 252 LEU VAL ASP ALA GLU THR LEU LYS VAL LYS PHE ILE GLU SEQRES 18 A 252 VAL GLU TYR ASP LYS LYS ILE ILE GLU ASP ARG ILE LYS SEQRES 19 A 252 LEU GLU LYS LEU PRO GLU GLU VAL ILE LYS ILE LEU TYR SEQRES 20 A 252 HIS GLY GLY LYS ALA SEQRES 1 B 252 MET VAL TYR VAL ALA VAL LEU ALA ASN ILE ALA GLY ASN SEQRES 2 B 252 PHE PRO ALA LEU THR ALA ALA LEU GLU LYS ILE GLU GLU SEQRES 3 B 252 LEU LYS GLU GLU GLY TYR GLU ILE GLU LYS TYR TYR ILE SEQRES 4 B 252 LEU GLY ASN ILE VAL GLY LEU PHE PRO TYR PRO ARG GLU SEQRES 5 B 252 VAL ILE GLU ALA ILE LYS ASN LEU ALA LYS THR SER ASN SEQRES 6 B 252 VAL LYS VAL ILE ARG GLY LYS TYR ASP GLN LEU ILE ALA SEQRES 7 B 252 MET SER ASP PRO HIS ALA GLY ASP PRO LYS TYR ILE ASP SEQRES 8 B 252 LYS LEU GLU ILE PRO ASP HIS LEU LYS ALA THR LEU LYS SEQRES 9 B 252 TYR THR TRP GLU LYS LEU GLY HIS GLU GLY ARG GLU TYR SEQRES 10 B 252 LEU ARG ASP LEU PRO ILE TYR LEU VAL ASP LYS ILE GLY SEQRES 11 B 252 LYS ASN GLU ILE PHE GLY VAL TYR GLY SER PRO VAL ASN SEQRES 12 B 252 PRO PHE ASP GLY GLU ILE LEU PRO ASP GLN PRO THR SER SEQRES 13 B 252 TYR TYR GLU ALA ILE MET ARG PRO VAL LYS GLU TYR GLU SEQRES 14 B 252 MET LEU LEU VAL ALA SER PRO ARG TYR PRO LEU ASP ALA SEQRES 15 B 252 MET THR MET TYR GLY ARG VAL VAL CYS PRO GLY SER ILE SEQRES 16 B 252 GLY PHE PRO PRO ALA ARG GLU HIS LYS ALA THR PHE ALA SEQRES 17 B 252 LEU VAL ASP ALA GLU THR LEU LYS VAL LYS PHE ILE GLU SEQRES 18 B 252 VAL GLU TYR ASP LYS LYS ILE ILE GLU ASP ARG ILE LYS SEQRES 19 B 252 LEU GLU LYS LEU PRO GLU GLU VAL ILE LYS ILE LEU TYR SEQRES 20 B 252 HIS GLY GLY LYS ALA SEQRES 1 C 252 MET VAL TYR VAL ALA VAL LEU ALA ASN ILE ALA GLY ASN SEQRES 2 C 252 PHE PRO ALA LEU THR ALA ALA LEU GLU LYS ILE GLU GLU SEQRES 3 C 252 LEU LYS GLU GLU GLY TYR GLU ILE GLU LYS TYR TYR ILE SEQRES 4 C 252 LEU GLY ASN ILE VAL GLY LEU PHE PRO TYR PRO ARG GLU SEQRES 5 C 252 VAL ILE GLU ALA ILE LYS ASN LEU ALA LYS THR SER ASN SEQRES 6 C 252 VAL LYS VAL ILE ARG GLY LYS TYR ASP GLN LEU ILE ALA SEQRES 7 C 252 MET SER ASP PRO HIS ALA GLY ASP PRO LYS TYR ILE ASP SEQRES 8 C 252 LYS LEU GLU ILE PRO ASP HIS LEU LYS ALA THR LEU LYS SEQRES 9 C 252 TYR THR TRP GLU LYS LEU GLY HIS GLU GLY ARG GLU TYR SEQRES 10 C 252 LEU ARG ASP LEU PRO ILE TYR LEU VAL ASP LYS ILE GLY SEQRES 11 C 252 LYS ASN GLU ILE PHE GLY VAL TYR GLY SER PRO VAL ASN SEQRES 12 C 252 PRO PHE ASP GLY GLU ILE LEU PRO ASP GLN PRO THR SER SEQRES 13 C 252 TYR TYR GLU ALA ILE MET ARG PRO VAL LYS GLU TYR GLU SEQRES 14 C 252 MET LEU LEU VAL ALA SER PRO ARG TYR PRO LEU ASP ALA SEQRES 15 C 252 MET THR MET TYR GLY ARG VAL VAL CYS PRO GLY SER ILE SEQRES 16 C 252 GLY PHE PRO PRO ALA ARG GLU HIS LYS ALA THR PHE ALA SEQRES 17 C 252 LEU VAL ASP ALA GLU THR LEU LYS VAL LYS PHE ILE GLU SEQRES 18 C 252 VAL GLU TYR ASP LYS LYS ILE ILE GLU ASP ARG ILE LYS SEQRES 19 C 252 LEU GLU LYS LEU PRO GLU GLU VAL ILE LYS ILE LEU TYR SEQRES 20 C 252 HIS GLY GLY LYS ALA SEQRES 1 D 252 MET VAL TYR VAL ALA VAL LEU ALA ASN ILE ALA GLY ASN SEQRES 2 D 252 PHE PRO ALA LEU THR ALA ALA LEU GLU LYS ILE GLU GLU SEQRES 3 D 252 LEU LYS GLU GLU GLY TYR GLU ILE GLU LYS TYR TYR ILE SEQRES 4 D 252 LEU GLY ASN ILE VAL GLY LEU PHE PRO TYR PRO ARG GLU SEQRES 5 D 252 VAL ILE GLU ALA ILE LYS ASN LEU ALA LYS THR SER ASN SEQRES 6 D 252 VAL LYS VAL ILE ARG GLY LYS TYR ASP GLN LEU ILE ALA SEQRES 7 D 252 MET SER ASP PRO HIS ALA GLY ASP PRO LYS TYR ILE ASP SEQRES 8 D 252 LYS LEU GLU ILE PRO ASP HIS LEU LYS ALA THR LEU LYS SEQRES 9 D 252 TYR THR TRP GLU LYS LEU GLY HIS GLU GLY ARG GLU TYR SEQRES 10 D 252 LEU ARG ASP LEU PRO ILE TYR LEU VAL ASP LYS ILE GLY SEQRES 11 D 252 LYS ASN GLU ILE PHE GLY VAL TYR GLY SER PRO VAL ASN SEQRES 12 D 252 PRO PHE ASP GLY GLU ILE LEU PRO ASP GLN PRO THR SER SEQRES 13 D 252 TYR TYR GLU ALA ILE MET ARG PRO VAL LYS GLU TYR GLU SEQRES 14 D 252 MET LEU LEU VAL ALA SER PRO ARG TYR PRO LEU ASP ALA SEQRES 15 D 252 MET THR MET TYR GLY ARG VAL VAL CYS PRO GLY SER ILE SEQRES 16 D 252 GLY PHE PRO PRO ALA ARG GLU HIS LYS ALA THR PHE ALA SEQRES 17 D 252 LEU VAL ASP ALA GLU THR LEU LYS VAL LYS PHE ILE GLU SEQRES 18 D 252 VAL GLU TYR ASP LYS LYS ILE ILE GLU ASP ARG ILE LYS SEQRES 19 D 252 LEU GLU LYS LEU PRO GLU GLU VAL ILE LYS ILE LEU TYR SEQRES 20 D 252 HIS GLY GLY LYS ALA HET NA A2001 1 HET PO4 A3001 5 HET PO4 A3005 5 HET NA B2002 1 HET PO4 B3002 5 HET NA C2003 1 HET PO4 C3003 5 HET PO4 C3006 5 HET NA D2004 1 HET PO4 D3004 5 HET PO4 D3007 5 HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 5 NA 4(NA 1+) FORMUL 6 PO4 7(O4 P 3-) FORMUL 16 HOH *1039(H2 O) HELIX 1 1 ASN A 13 LYS A 28 1 16 HELIX 2 2 GLU A 29 GLY A 31 5 3 HELIX 3 3 TYR A 49 SER A 64 1 16 HELIX 4 4 GLY A 71 MET A 79 1 9 HELIX 5 5 PRO A 87 LEU A 93 5 7 HELIX 6 6 PRO A 96 LEU A 121 1 26 HELIX 7 7 PRO A 154 ARG A 163 1 10 HELIX 8 8 PRO A 164 LYS A 166 5 3 HELIX 9 9 ASP A 225 GLU A 236 1 12 HELIX 10 10 PRO A 239 GLY A 249 1 11 HELIX 11 11 ASN B 13 GLU B 30 1 18 HELIX 12 12 TYR B 49 SER B 64 1 16 HELIX 13 13 GLY B 71 MET B 79 1 9 HELIX 14 14 PRO B 87 LEU B 93 5 7 HELIX 15 15 PRO B 96 ASP B 120 1 25 HELIX 16 16 PRO B 154 ARG B 163 1 10 HELIX 17 17 PRO B 164 LYS B 166 5 3 HELIX 18 18 LYS B 226 GLU B 236 1 11 HELIX 19 19 PRO B 239 GLY B 249 1 11 HELIX 20 20 ASN C 13 GLU C 30 1 18 HELIX 21 21 TYR C 49 SER C 64 1 16 HELIX 22 22 GLY C 71 MET C 79 1 9 HELIX 23 23 PRO C 87 LEU C 93 5 7 HELIX 24 24 PRO C 96 LEU C 121 1 26 HELIX 25 25 PRO C 154 ARG C 163 1 10 HELIX 26 26 PRO C 164 LYS C 166 5 3 HELIX 27 27 ASP C 225 GLU C 236 1 12 HELIX 28 28 PRO C 239 GLY C 249 1 11 HELIX 29 29 ASN D 13 GLU D 29 1 17 HELIX 30 30 TYR D 49 SER D 64 1 16 HELIX 31 31 GLY D 71 MET D 79 1 9 HELIX 32 32 PRO D 87 LEU D 93 5 7 HELIX 33 33 PRO D 96 LEU D 121 1 26 HELIX 34 34 PRO D 154 ARG D 163 1 10 HELIX 35 35 PRO D 164 LYS D 166 5 3 HELIX 36 36 ASP D 225 GLU D 236 1 12 HELIX 37 37 PRO D 239 GLY D 249 1 11 SHEET 1 A 5 ASN A 65 VAL A 68 0 SHEET 2 A 5 GLU A 33 LEU A 40 1 N TYR A 37 O ASN A 65 SHEET 3 A 5 VAL A 2 ALA A 8 1 N LEU A 7 O LEU A 40 SHEET 4 A 5 ALA A 205 ASP A 211 -1 O ALA A 208 N VAL A 6 SHEET 5 A 5 VAL A 217 VAL A 222 -1 O ILE A 220 N PHE A 207 SHEET 1 B 5 LEU A 125 ILE A 129 0 SHEET 2 B 5 ASN A 132 VAL A 137 -1 O ILE A 134 N ASP A 127 SHEET 3 B 5 MET A 170 VAL A 173 1 O LEU A 172 N PHE A 135 SHEET 4 B 5 GLY A 187 PRO A 192 1 O VAL A 190 N LEU A 171 SHEET 5 B 5 PRO A 179 THR A 184 -1 N ALA A 182 O VAL A 189 SHEET 1 C 5 VAL B 66 VAL B 68 0 SHEET 2 C 5 GLU B 33 LEU B 40 1 N ILE B 39 O LYS B 67 SHEET 3 C 5 VAL B 2 ALA B 8 1 N TYR B 3 O GLU B 33 SHEET 4 C 5 ALA B 205 ASP B 211 -1 O ALA B 208 N VAL B 6 SHEET 5 C 5 VAL B 217 VAL B 222 -1 O ILE B 220 N PHE B 207 SHEET 1 D 5 LEU B 125 ILE B 129 0 SHEET 2 D 5 ASN B 132 VAL B 137 -1 O ILE B 134 N ASP B 127 SHEET 3 D 5 MET B 170 VAL B 173 1 O LEU B 172 N PHE B 135 SHEET 4 D 5 GLY B 187 CYS B 191 1 O VAL B 190 N LEU B 171 SHEET 5 D 5 LEU B 180 THR B 184 -1 N ALA B 182 O VAL B 189 SHEET 1 E 5 ASN C 65 VAL C 68 0 SHEET 2 E 5 GLU C 33 LEU C 40 1 N ILE C 39 O LYS C 67 SHEET 3 E 5 VAL C 2 ALA C 8 1 N LEU C 7 O LEU C 40 SHEET 4 E 5 ALA C 205 ASP C 211 -1 O ALA C 208 N VAL C 6 SHEET 5 E 5 VAL C 217 VAL C 222 -1 O ILE C 220 N PHE C 207 SHEET 1 F 5 LEU C 125 ILE C 129 0 SHEET 2 F 5 ASN C 132 VAL C 137 -1 O ILE C 134 N ASP C 127 SHEET 3 F 5 MET C 170 VAL C 173 1 O LEU C 172 N PHE C 135 SHEET 4 F 5 GLY C 187 CYS C 191 1 O VAL C 190 N LEU C 171 SHEET 5 F 5 LEU C 180 THR C 184 -1 N ALA C 182 O VAL C 189 SHEET 1 G 5 VAL D 66 ILE D 69 0 SHEET 2 G 5 GLU D 33 LEU D 40 1 N ILE D 39 O LYS D 67 SHEET 3 G 5 VAL D 2 ALA D 8 1 N TYR D 3 O GLU D 33 SHEET 4 G 5 ALA D 205 ASP D 211 -1 O ALA D 208 N VAL D 6 SHEET 5 G 5 VAL D 217 VAL D 222 -1 O LYS D 218 N LEU D 209 SHEET 1 H 5 LEU D 125 ILE D 129 0 SHEET 2 H 5 ASN D 132 VAL D 137 -1 O ILE D 134 N ASP D 127 SHEET 3 H 5 MET D 170 VAL D 173 1 O LEU D 172 N PHE D 135 SHEET 4 H 5 GLY D 187 CYS D 191 1 O VAL D 190 N LEU D 171 SHEET 5 H 5 LEU D 180 THR D 184 -1 N ALA D 182 O VAL D 189 LINK O LYS A 166 NA NA A2001 1555 1555 2.71 LINK O TYR A 168 NA NA A2001 1555 1555 2.74 LINK O TYR A 186 NA NA A2001 1555 1555 2.51 LINK NA NA A2001 O HOH A3060 1555 1555 2.57 LINK NA NA A2001 O HOH A3065 1555 1555 2.52 LINK NA NA A2001 O HOH A3073 1555 1555 2.73 LINK O LYS B 166 NA NA B2002 1555 1555 2.68 LINK O TYR B 168 NA NA B2002 1555 1555 2.66 LINK O TYR B 186 NA NA B2002 1555 1555 2.39 LINK NA NA B2002 O HOH B3033 1555 1555 2.66 LINK NA NA B2002 O HOH B3226 1555 1555 2.50 LINK NA NA B2002 O HOH B3227 1555 1555 2.77 LINK O LYS C 166 NA NA C2003 1555 1555 2.59 LINK O TYR C 168 NA NA C2003 1555 1555 2.68 LINK O TYR C 186 NA NA C2003 1555 1555 2.57 LINK NA NA C2003 O HOH C3057 1555 1555 2.64 LINK NA NA C2003 O HOH C3108 1555 1555 2.52 LINK NA NA C2003 O HOH C3109 1555 1555 2.60 LINK O LYS D 166 NA NA D2004 1555 1555 2.69 LINK O TYR D 168 NA NA D2004 1555 1555 2.64 LINK O TYR D 186 NA NA D2004 1555 1555 2.56 LINK NA NA D2004 O HOH D3020 1555 1555 2.61 LINK NA NA D2004 O HOH D3037 1555 1555 2.53 LINK NA NA D2004 O HOH D3064 1555 1555 2.69 CISPEP 1 GLY A 41 ASN A 42 0 5.72 CISPEP 2 GLY B 41 ASN B 42 0 -2.37 CISPEP 3 GLY C 41 ASN C 42 0 -2.80 CISPEP 4 GLY D 41 ASN D 42 0 -7.10 SITE 1 AC1 6 LYS A 166 TYR A 168 TYR A 186 HOH A3060 SITE 2 AC1 6 HOH A3065 HOH A3073 SITE 1 AC2 6 LYS B 166 TYR B 168 TYR B 186 HOH B3033 SITE 2 AC2 6 HOH B3226 HOH B3227 SITE 1 AC3 6 LYS C 166 TYR C 168 TYR C 186 HOH C3057 SITE 2 AC3 6 HOH C3108 HOH C3109 SITE 1 AC4 6 LYS D 166 TYR D 168 TYR D 186 HOH D3020 SITE 2 AC4 6 HOH D3037 HOH D3064 SITE 1 AC5 4 MET A 1 TYR A 3 GLY A 31 TYR A 32 SITE 1 AC6 7 MET B 1 TYR B 3 GLY B 31 TYR B 32 SITE 2 AC6 7 HOH B3059 HOH B3126 LYS D 227 SITE 1 AC7 5 LYS B 227 MET C 1 TYR C 3 GLY C 31 SITE 2 AC7 5 TYR C 32 SITE 1 AC8 5 LYS A 227 HOH A3139 TYR D 3 GLY D 31 SITE 2 AC8 5 TYR D 32 SITE 1 AC9 3 ILE A 95 LEU A 99 ALA A 252 SITE 1 BC1 1 ALA C 252 SITE 1 BC2 3 PRO D 96 ALA D 252 HOH D3270 CRYST1 99.742 129.571 113.557 90.00 104.46 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010026 0.000000 0.002586 0.00000 SCALE2 0.000000 0.007718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009094 0.00000