HEADER CELL ADHESION 31-MAR-06 2GJY TITLE NMR SOLUTION STRUCTURE OF TENSIN1 PTB DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PTB DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: TNS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS FOCAL ADHESION BETA SANDWICH, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.LEONE,M.PELLECCHIA REVDAT 4 09-MAR-22 2GJY 1 REMARK SEQADV ATOM REVDAT 3 24-FEB-09 2GJY 1 VERSN REVDAT 2 11-DEC-07 2GJY 1 JRNL REVDAT 1 03-APR-07 2GJY 0 JRNL AUTH M.LEONE,E.C.YU,R.C.LIDDINGTON,E.B.PASQUALE,M.PELLECCHIA JRNL TITL THE PTB DOMAIN OF TENSIN: NMR SOLUTION STRUCTURE AND JRNL TITL 2 PHOSPHOINOSITIDES BINDING STUDIES. JRNL REF BIOPOLYMERS V. 89 86 2007 JRNL REFN ISSN 0006-3525 JRNL PMID 17922498 JRNL DOI 10.1002/BIP.20862 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, GROMOS 96 REMARK 3 AUTHORS : GUNTHERT (DYANA), VAN GUNSTEREN (GROMOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037211. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE AND 150MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PTB DOMAIN U-15N; 50MM REMARK 210 PHOSPHATE BUFFER; 150MM NACL; 90% REMARK 210 H2O; 10%D2O; 1MM PTB DOMAIN U- REMARK 210 15N; 50MM PHOSPHATE BUFFER; REMARK 210 150MM NACL; 100%D2O; 1MM PTB REMARK 210 DOMAIN U-15N, U-13C; 50MM REMARK 210 PHOSPHATE BUFFER; 150MM NACL; 90% REMARK 210 H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 NOESY; 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, XEASY 1.3.13 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 13 ASP A 81 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -160.60 -107.83 REMARK 500 1 MET A 4 117.61 178.60 REMARK 500 1 ALA A 7 92.33 -173.96 REMARK 500 1 ILE A 13 -85.32 -107.36 REMARK 500 1 GLU A 19 54.62 78.99 REMARK 500 1 SER A 20 78.68 60.64 REMARK 500 1 LEU A 21 -77.73 -96.22 REMARK 500 1 THR A 22 -78.72 -173.14 REMARK 500 1 THR A 34 -45.76 -142.12 REMARK 500 1 ALA A 37 107.38 -43.68 REMARK 500 1 ALA A 52 76.91 33.80 REMARK 500 1 GLN A 61 -78.28 -65.74 REMARK 500 1 ARG A 62 45.41 -165.19 REMARK 500 1 LYS A 63 73.23 56.27 REMARK 500 1 PHE A 66 -172.96 -57.80 REMARK 500 1 VAL A 75 85.04 -69.34 REMARK 500 1 THR A 88 38.85 -72.45 REMARK 500 1 LYS A 89 154.42 62.11 REMARK 500 1 ASP A 91 90.89 167.81 REMARK 500 1 SER A 93 120.48 64.42 REMARK 500 1 ARG A 104 76.77 -100.58 REMARK 500 1 GLN A 106 125.30 68.74 REMARK 500 1 SER A 108 -70.56 -82.42 REMARK 500 1 ASP A 111 96.22 -64.12 REMARK 500 1 GLN A 124 78.47 -165.19 REMARK 500 1 SER A 140 -52.87 -167.02 REMARK 500 1 GLN A 142 -58.17 64.39 REMARK 500 2 HIS A 3 89.34 -171.85 REMARK 500 2 MET A 4 128.99 -175.94 REMARK 500 2 ALA A 7 97.47 -176.88 REMARK 500 2 ILE A 13 -83.56 -110.53 REMARK 500 2 GLU A 17 105.06 -54.36 REMARK 500 2 GLU A 19 178.86 51.39 REMARK 500 2 LEU A 21 -82.80 -51.48 REMARK 500 2 THR A 22 -81.88 -166.73 REMARK 500 2 PRO A 24 48.27 -73.38 REMARK 500 2 GLN A 25 -47.14 -164.82 REMARK 500 2 ALA A 37 106.08 -45.40 REMARK 500 2 ALA A 52 95.79 -47.87 REMARK 500 2 LYS A 63 -52.38 81.23 REMARK 500 2 GLU A 84 48.30 37.50 REMARK 500 2 THR A 88 64.73 -103.11 REMARK 500 2 LYS A 89 -76.34 -38.82 REMARK 500 2 ASP A 91 86.68 52.57 REMARK 500 2 SER A 93 -46.57 -173.79 REMARK 500 2 LYS A 97 127.03 -39.46 REMARK 500 2 SER A 108 81.88 -62.25 REMARK 500 2 THR A 109 -85.99 53.64 REMARK 500 2 THR A 110 51.28 -149.62 REMARK 500 2 GLN A 124 80.70 -163.26 REMARK 500 REMARK 500 THIS ENTRY HAS 496 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 70 0.07 SIDE CHAIN REMARK 500 4 TYR A 70 0.07 SIDE CHAIN REMARK 500 8 TYR A 70 0.06 SIDE CHAIN REMARK 500 9 TYR A 70 0.07 SIDE CHAIN REMARK 500 15 TYR A 70 0.07 SIDE CHAIN REMARK 500 20 TYR A 70 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ALA A 37 12.12 REMARK 500 2 ALA A 37 12.77 REMARK 500 3 VAL A 16 10.10 REMARK 500 3 CYS A 114 10.12 REMARK 500 5 ILE A 27 -10.77 REMARK 500 5 ALA A 37 11.54 REMARK 500 6 ALA A 37 11.34 REMARK 500 7 ALA A 26 -10.12 REMARK 500 7 ALA A 37 12.58 REMARK 500 8 VAL A 16 10.19 REMARK 500 8 ALA A 37 11.84 REMARK 500 10 ILE A 27 -11.35 REMARK 500 11 LYS A 29 -10.45 REMARK 500 11 ALA A 37 12.13 REMARK 500 11 SER A 108 10.27 REMARK 500 12 ALA A 26 -10.75 REMARK 500 12 ALA A 37 11.61 REMARK 500 13 ALA A 37 11.71 REMARK 500 14 ILE A 27 -11.10 REMARK 500 14 CYS A 114 10.18 REMARK 500 15 ALA A 26 -10.19 REMARK 500 15 ALA A 37 12.74 REMARK 500 16 CYS A 8 -10.15 REMARK 500 16 ILE A 27 -10.18 REMARK 500 17 ALA A 30 -10.38 REMARK 500 17 CYS A 114 10.04 REMARK 500 18 ALA A 37 11.35 REMARK 500 20 ALA A 37 11.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WVH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TENSIN1 PTB DOMAIN DBREF 2GJY A 5 144 UNP Q04205 TENS_CHICK 1605 1744 SEQADV 2GJY GLY A 1 UNP Q04205 CLONING ARTIFACT SEQADV 2GJY SER A 2 UNP Q04205 CLONING ARTIFACT SEQADV 2GJY HIS A 3 UNP Q04205 CLONING ARTIFACT SEQADV 2GJY MET A 4 UNP Q04205 CLONING ARTIFACT SEQRES 1 A 144 GLY SER HIS MET GLY ALA ALA CYS ASN VAL LEU PHE ILE SEQRES 2 A 144 ASN SER VAL GLU MET GLU SER LEU THR GLY PRO GLN ALA SEQRES 3 A 144 ILE SER LYS ALA VAL ALA GLU THR LEU VAL ALA ASP PRO SEQRES 4 A 144 THR PRO THR ALA THR ILE VAL HIS PHE LYS VAL SER ALA SEQRES 5 A 144 GLN GLY ILE THR LEU THR ASP ASN GLN ARG LYS LEU PHE SEQRES 6 A 144 PHE ARG ARG HIS TYR PRO LEU ASN THR VAL THR PHE CYS SEQRES 7 A 144 ASP LEU ASP PRO GLN GLU ARG LYS TRP THR LYS THR ASP SEQRES 8 A 144 GLY SER GLY PRO ALA LYS LEU PHE GLY PHE VAL ALA ARG SEQRES 9 A 144 LYS GLN GLY SER THR THR ASP ASN VAL CYS HIS LEU PHE SEQRES 10 A 144 ALA GLU LEU ASP PRO ASP GLN PRO ALA ALA ALA ILE VAL SEQRES 11 A 144 ASN PHE VAL SER ARG VAL MET LEU GLY SER GLY GLN LYS SEQRES 12 A 144 ARG HELIX 1 1 GLN A 25 ALA A 32 1 8 HELIX 2 2 PRO A 125 MET A 137 1 13 SHEET 1 A 7 ARG A 68 TYR A 70 0 SHEET 2 A 7 ILE A 55 ASP A 59 -1 N ILE A 55 O TYR A 70 SHEET 3 A 7 THR A 44 VAL A 50 -1 N LYS A 49 O THR A 56 SHEET 4 A 7 CYS A 8 GLU A 17 -1 N VAL A 10 O VAL A 46 SHEET 5 A 7 VAL A 113 GLU A 119 -1 O CYS A 114 N VAL A 16 SHEET 6 A 7 ALA A 96 ALA A 103 -1 N PHE A 99 O PHE A 117 SHEET 7 A 7 VAL A 75 LEU A 80 -1 N PHE A 77 O VAL A 102 SHEET 1 B 7 ARG A 68 TYR A 70 0 SHEET 2 B 7 ILE A 55 ASP A 59 -1 N ILE A 55 O TYR A 70 SHEET 3 B 7 THR A 44 VAL A 50 -1 N LYS A 49 O THR A 56 SHEET 4 B 7 CYS A 8 GLU A 17 -1 N VAL A 10 O VAL A 46 SHEET 5 B 7 VAL A 113 GLU A 119 -1 O CYS A 114 N VAL A 16 SHEET 6 B 7 ALA A 96 ALA A 103 -1 N PHE A 99 O PHE A 117 SHEET 7 B 7 LYS A 86 TRP A 87 -1 N TRP A 87 O ALA A 96 CISPEP 1 ASP A 38 PRO A 39 1 -1.47 CISPEP 2 ASP A 38 PRO A 39 2 0.92 CISPEP 3 ASP A 38 PRO A 39 3 0.26 CISPEP 4 ASP A 38 PRO A 39 4 -2.17 CISPEP 5 ASP A 38 PRO A 39 5 -1.54 CISPEP 6 ASP A 38 PRO A 39 6 -3.67 CISPEP 7 ASP A 38 PRO A 39 7 -0.81 CISPEP 8 ASP A 38 PRO A 39 8 -0.02 CISPEP 9 ASP A 38 PRO A 39 9 -4.29 CISPEP 10 ASP A 38 PRO A 39 10 -2.53 CISPEP 11 ASP A 38 PRO A 39 11 0.14 CISPEP 12 ASP A 38 PRO A 39 12 -1.93 CISPEP 13 ASP A 38 PRO A 39 13 -0.31 CISPEP 14 ASP A 38 PRO A 39 14 -0.66 CISPEP 15 ASP A 38 PRO A 39 15 -2.91 CISPEP 16 ASP A 38 PRO A 39 16 -0.60 CISPEP 17 ASP A 38 PRO A 39 17 -3.13 CISPEP 18 ASP A 38 PRO A 39 18 0.55 CISPEP 19 ASP A 38 PRO A 39 19 -1.25 CISPEP 20 ASP A 38 PRO A 39 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1