HEADER HYDROLASE 31-MAR-06 2GK6 TITLE STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE HUMAN UPF1 HELICASE CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF NONSENSE TRANSCRIPTS 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HELICASE CORE DOMAIN(RESIDUES 295-914); COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE RENT1, NONSENSE MRNA REDUCING FACTOR COMPND 6 1, NORF1, UP-FRAMESHIFT SUPPRESSOR 1 HOMOLOG, HUPF1; COMPND 7 EC: 3.6.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21 STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS UPF1, HELICASE, NMD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHENG,D.MUHLRAD,R.PARKER,H.SONG REVDAT 5 25-OCT-23 2GK6 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2GK6 1 VERSN REVDAT 3 24-FEB-09 2GK6 1 VERSN REVDAT 2 23-JAN-07 2GK6 1 JRNL REVDAT 1 09-JAN-07 2GK6 0 JRNL AUTH Z.CHENG,D.MUHLRAD,M.K.LIM,R.PARKER,H.SONG JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE HUMAN UPF1 JRNL TITL 2 HELICASE CORE JRNL REF EMBO J. V. 26 253 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17159905 JRNL DOI 10.1038/SJ.EMBOJ.7601464 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 41163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2207 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2293 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : 3.32000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 1.53000 REMARK 3 B13 (A**2) : 1.21000 REMARK 3 B23 (A**2) : 2.56000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.308 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.326 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9738 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 8948 ; 0.011 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13186 ; 1.126 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20884 ; 0.790 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1196 ; 5.145 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1486 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10646 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1866 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2100 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 10552 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 5590 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 227 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.124 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 153 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5996 ; 0.487 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9694 ; 0.922 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3742 ; 0.944 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3492 ; 1.657 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 324 REMARK 3 RESIDUE RANGE : A 325 A 415 REMARK 3 RESIDUE RANGE : A 416 A 699 REMARK 3 RESIDUE RANGE : A 700 A 911 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8713 -14.3212 2.9957 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0846 REMARK 3 T33: 0.0414 T12: 0.0418 REMARK 3 T13: 0.0013 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 0.9854 L22: 0.7354 REMARK 3 L33: 0.4305 L12: 0.1552 REMARK 3 L13: 0.0195 L23: -0.3775 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.1143 S13: -0.1002 REMARK 3 S21: -0.0060 S22: 0.0108 S23: -0.0560 REMARK 3 S31: 0.0059 S32: -0.0400 S33: 0.0538 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 293 B 324 REMARK 3 RESIDUE RANGE : B 325 B 415 REMARK 3 RESIDUE RANGE : B 416 B 699 REMARK 3 RESIDUE RANGE : B 700 B 911 REMARK 3 ORIGIN FOR THE GROUP (A): -38.6333 -28.1239 40.6078 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0865 REMARK 3 T33: 0.0517 T12: -0.0304 REMARK 3 T13: -0.0036 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.6273 L22: 0.5435 REMARK 3 L33: 0.5446 L12: 0.0630 REMARK 3 L13: -0.1304 L23: -0.2910 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.0718 S13: 0.0770 REMARK 3 S21: -0.0277 S22: 0.0106 S23: -0.0187 REMARK 3 S31: -0.0354 S32: 0.0006 S33: 0.0055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43423 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2GJK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 8-13% PEG3350, 140MM REMARK 280 (NH4)3PO4, 10% EG, 10MM DTT, PH 7.5, EVAPORATION, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 291 REMARK 465 LEU A 292 REMARK 465 LYS A 349 REMARK 465 THR A 350 REMARK 465 ASP A 351 REMARK 465 SER A 352 REMARK 465 ASP A 353 REMARK 465 MET A 354 REMARK 465 ARG A 355 REMARK 465 GLU A 583 REMARK 465 THR A 584 REMARK 465 GLY A 585 REMARK 465 GLU A 586 REMARK 465 ALA A 844 REMARK 465 ASN A 845 REMARK 465 GLU A 846 REMARK 465 HIS A 847 REMARK 465 GLN A 848 REMARK 465 GLY A 849 REMARK 465 GLN A 912 REMARK 465 PHE A 913 REMARK 465 SER A 914 REMARK 465 PRO B 291 REMARK 465 LEU B 292 REMARK 465 LYS B 349 REMARK 465 THR B 350 REMARK 465 ASP B 351 REMARK 465 SER B 352 REMARK 465 ASP B 353 REMARK 465 MET B 354 REMARK 465 ARG B 355 REMARK 465 GLU B 583 REMARK 465 THR B 584 REMARK 465 GLY B 585 REMARK 465 GLU B 586 REMARK 465 ALA B 844 REMARK 465 ASN B 845 REMARK 465 GLU B 846 REMARK 465 HIS B 847 REMARK 465 GLN B 848 REMARK 465 GLY B 849 REMARK 465 GLN B 912 REMARK 465 PHE B 913 REMARK 465 SER B 914 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 PO4 B 1990 O2B ADP B 1820 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 842 C ARG B 843 N 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 385 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 412 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 855 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 VAL B 842 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP B 855 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 339 -2.58 77.28 REMARK 500 PRO A 372 -80.54 -64.72 REMARK 500 LEU A 373 83.53 49.26 REMARK 500 THR A 406 42.50 -166.36 REMARK 500 HIS A 407 -50.01 -133.48 REMARK 500 ASN A 408 70.40 -106.93 REMARK 500 LYS A 456 45.66 -102.65 REMARK 500 ILE A 552 149.58 177.95 REMARK 500 ARG A 566 9.01 -68.20 REMARK 500 GLN A 579 34.20 -90.32 REMARK 500 LEU A 580 -33.91 -130.47 REMARK 500 LYS A 581 43.11 -81.19 REMARK 500 LEU A 625 38.17 -87.66 REMARK 500 LEU A 652 34.31 -91.00 REMARK 500 ASP A 662 107.39 -164.80 REMARK 500 ASP A 736 61.98 -102.29 REMARK 500 ASP A 743 30.37 -91.89 REMARK 500 PRO A 745 70.49 -69.87 REMARK 500 MET A 746 148.01 -171.12 REMARK 500 GLU A 756 -162.73 -112.24 REMARK 500 ALA A 758 122.21 -26.79 REMARK 500 SER A 759 96.66 -45.08 REMARK 500 SER A 760 -48.20 -165.50 REMARK 500 THR A 762 74.79 -112.86 REMARK 500 ALA A 785 133.93 -36.55 REMARK 500 GLN A 808 -57.08 -173.30 REMARK 500 SER A 810 64.00 -158.78 REMARK 500 ASN A 854 -56.55 -127.81 REMARK 500 LYS A 896 46.11 73.72 REMARK 500 ARG A 907 -122.70 -128.35 REMARK 500 GLU A 908 114.94 -165.20 REMARK 500 LYS B 339 -4.37 74.84 REMARK 500 PRO B 372 -75.99 -66.29 REMARK 500 LEU B 373 81.54 42.87 REMARK 500 ILE B 381 11.97 -142.58 REMARK 500 LYS B 382 129.99 -172.53 REMARK 500 ASP B 385 -151.77 -151.76 REMARK 500 THR B 406 36.36 -165.17 REMARK 500 HIS B 407 -44.96 -133.28 REMARK 500 ASN B 408 67.62 -112.16 REMARK 500 LYS B 456 49.37 -107.79 REMARK 500 ILE B 552 149.06 175.28 REMARK 500 ASN B 567 52.98 -140.16 REMARK 500 GLN B 579 39.14 -87.83 REMARK 500 LEU B 580 -30.15 -130.69 REMARK 500 LYS B 581 48.17 -88.41 REMARK 500 LEU B 625 36.61 -91.48 REMARK 500 THR B 639 0.52 -68.50 REMARK 500 LEU B 652 33.57 -88.50 REMARK 500 ASP B 662 105.91 -165.45 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 84 O REMARK 620 2 THR A 499 OG1 74.1 REMARK 620 3 ADP A1001 O1B 92.7 68.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 39 O REMARK 620 2 THR B 499 OG1 80.6 REMARK 620 3 ADP B1820 O1B 95.6 82.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 990 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1990 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1820 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GJK RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH ANP(5'-ADENYL-IMIDO-TRIPHOSPHATE) REMARK 900 RELATED ID: 2GK7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 2GK8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH SAP(ADENOSINE-5'-DIPHOSPHATE REMARK 900 MONOTHIOPHOSPHATE) DBREF 2GK6 A 295 914 UNP Q92900 RENT1_HUMAN 295 914 DBREF 2GK6 B 295 914 UNP Q92900 RENT1_HUMAN 295 914 SEQADV 2GK6 PRO A 291 UNP Q92900 CLONING ARTIFACT SEQADV 2GK6 LEU A 292 UNP Q92900 CLONING ARTIFACT SEQADV 2GK6 GLY A 293 UNP Q92900 CLONING ARTIFACT SEQADV 2GK6 SER A 294 UNP Q92900 CLONING ARTIFACT SEQADV 2GK6 PRO B 291 UNP Q92900 CLONING ARTIFACT SEQADV 2GK6 LEU B 292 UNP Q92900 CLONING ARTIFACT SEQADV 2GK6 GLY B 293 UNP Q92900 CLONING ARTIFACT SEQADV 2GK6 SER B 294 UNP Q92900 CLONING ARTIFACT SEQRES 1 A 624 PRO LEU GLY SER ARG TYR GLU ASP ALA TYR GLN TYR GLN SEQRES 2 A 624 ASN ILE PHE GLY PRO LEU VAL LYS LEU GLU ALA ASP TYR SEQRES 3 A 624 ASP LYS LYS LEU LYS GLU SER GLN THR GLN ASP ASN ILE SEQRES 4 A 624 THR VAL ARG TRP ASP LEU GLY LEU ASN LYS LYS ARG ILE SEQRES 5 A 624 ALA TYR PHE THR LEU PRO LYS THR ASP SER ASP MET ARG SEQRES 6 A 624 LEU MET GLN GLY ASP GLU ILE CYS LEU ARG TYR LYS GLY SEQRES 7 A 624 ASP LEU ALA PRO LEU TRP LYS GLY ILE GLY HIS VAL ILE SEQRES 8 A 624 LYS VAL PRO ASP ASN TYR GLY ASP GLU ILE ALA ILE GLU SEQRES 9 A 624 LEU ARG SER SER VAL GLY ALA PRO VAL GLU VAL THR HIS SEQRES 10 A 624 ASN PHE GLN VAL ASP PHE VAL TRP LYS SER THR SER PHE SEQRES 11 A 624 ASP ARG MET GLN SER ALA LEU LYS THR PHE ALA VAL ASP SEQRES 12 A 624 GLU THR SER VAL SER GLY TYR ILE TYR HIS LYS LEU LEU SEQRES 13 A 624 GLY HIS GLU VAL GLU ASP VAL ILE ILE LYS CYS GLN LEU SEQRES 14 A 624 PRO LYS ARG PHE THR ALA GLN GLY LEU PRO ASP LEU ASN SEQRES 15 A 624 HIS SER GLN VAL TYR ALA VAL LYS THR VAL LEU GLN ARG SEQRES 16 A 624 PRO LEU SER LEU ILE GLN GLY PRO PRO GLY THR GLY LYS SEQRES 17 A 624 THR VAL THR SER ALA THR ILE VAL TYR HIS LEU ALA ARG SEQRES 18 A 624 GLN GLY ASN GLY PRO VAL LEU VAL CYS ALA PRO SER ASN SEQRES 19 A 624 ILE ALA VAL ASP GLN LEU THR GLU LYS ILE HIS GLN THR SEQRES 20 A 624 GLY LEU LYS VAL VAL ARG LEU CYS ALA LYS SER ARG GLU SEQRES 21 A 624 ALA ILE ASP SER PRO VAL SER PHE LEU ALA LEU HIS ASN SEQRES 22 A 624 GLN ILE ARG ASN MET ASP SER MET PRO GLU LEU GLN LYS SEQRES 23 A 624 LEU GLN GLN LEU LYS ASP GLU THR GLY GLU LEU SER SER SEQRES 24 A 624 ALA ASP GLU LYS ARG TYR ARG ALA LEU LYS ARG THR ALA SEQRES 25 A 624 GLU ARG GLU LEU LEU MET ASN ALA ASP VAL ILE CYS CYS SEQRES 26 A 624 THR CYS VAL GLY ALA GLY ASP PRO ARG LEU ALA LYS MET SEQRES 27 A 624 GLN PHE ARG SER ILE LEU ILE ASP GLU SER THR GLN ALA SEQRES 28 A 624 THR GLU PRO GLU CYS MET VAL PRO VAL VAL LEU GLY ALA SEQRES 29 A 624 LYS GLN LEU ILE LEU VAL GLY ASP HIS CYS GLN LEU GLY SEQRES 30 A 624 PRO VAL VAL MET CYS LYS LYS ALA ALA LYS ALA GLY LEU SEQRES 31 A 624 SER GLN SER LEU PHE GLU ARG LEU VAL VAL LEU GLY ILE SEQRES 32 A 624 ARG PRO ILE ARG LEU GLN VAL GLN TYR ARG MET HIS PRO SEQRES 33 A 624 ALA LEU SER ALA PHE PRO SER ASN ILE PHE TYR GLU GLY SEQRES 34 A 624 SER LEU GLN ASN GLY VAL THR ALA ALA ASP ARG VAL LYS SEQRES 35 A 624 LYS GLY PHE ASP PHE GLN TRP PRO GLN PRO ASP LYS PRO SEQRES 36 A 624 MET PHE PHE TYR VAL THR GLN GLY GLN GLU GLU ILE ALA SEQRES 37 A 624 SER SER GLY THR SER TYR LEU ASN ARG THR GLU ALA ALA SEQRES 38 A 624 ASN VAL GLU LYS ILE THR THR LYS LEU LEU LYS ALA GLY SEQRES 39 A 624 ALA LYS PRO ASP GLN ILE GLY ILE ILE THR PRO TYR GLU SEQRES 40 A 624 GLY GLN ARG SER TYR LEU VAL GLN TYR MET GLN PHE SER SEQRES 41 A 624 GLY SER LEU HIS THR LYS LEU TYR GLN GLU VAL GLU ILE SEQRES 42 A 624 ALA SER VAL ASP ALA PHE GLN GLY ARG GLU LYS ASP PHE SEQRES 43 A 624 ILE ILE LEU SER CYS VAL ARG ALA ASN GLU HIS GLN GLY SEQRES 44 A 624 ILE GLY PHE LEU ASN ASP PRO ARG ARG LEU ASN VAL ALA SEQRES 45 A 624 LEU THR ARG ALA ARG TYR GLY VAL ILE ILE VAL GLY ASN SEQRES 46 A 624 PRO LYS ALA LEU SER LYS GLN PRO LEU TRP ASN HIS LEU SEQRES 47 A 624 LEU ASN TYR TYR LYS GLU GLN LYS VAL LEU VAL GLU GLY SEQRES 48 A 624 PRO LEU ASN ASN LEU ARG GLU SER LEU MET GLN PHE SER SEQRES 1 B 624 PRO LEU GLY SER ARG TYR GLU ASP ALA TYR GLN TYR GLN SEQRES 2 B 624 ASN ILE PHE GLY PRO LEU VAL LYS LEU GLU ALA ASP TYR SEQRES 3 B 624 ASP LYS LYS LEU LYS GLU SER GLN THR GLN ASP ASN ILE SEQRES 4 B 624 THR VAL ARG TRP ASP LEU GLY LEU ASN LYS LYS ARG ILE SEQRES 5 B 624 ALA TYR PHE THR LEU PRO LYS THR ASP SER ASP MET ARG SEQRES 6 B 624 LEU MET GLN GLY ASP GLU ILE CYS LEU ARG TYR LYS GLY SEQRES 7 B 624 ASP LEU ALA PRO LEU TRP LYS GLY ILE GLY HIS VAL ILE SEQRES 8 B 624 LYS VAL PRO ASP ASN TYR GLY ASP GLU ILE ALA ILE GLU SEQRES 9 B 624 LEU ARG SER SER VAL GLY ALA PRO VAL GLU VAL THR HIS SEQRES 10 B 624 ASN PHE GLN VAL ASP PHE VAL TRP LYS SER THR SER PHE SEQRES 11 B 624 ASP ARG MET GLN SER ALA LEU LYS THR PHE ALA VAL ASP SEQRES 12 B 624 GLU THR SER VAL SER GLY TYR ILE TYR HIS LYS LEU LEU SEQRES 13 B 624 GLY HIS GLU VAL GLU ASP VAL ILE ILE LYS CYS GLN LEU SEQRES 14 B 624 PRO LYS ARG PHE THR ALA GLN GLY LEU PRO ASP LEU ASN SEQRES 15 B 624 HIS SER GLN VAL TYR ALA VAL LYS THR VAL LEU GLN ARG SEQRES 16 B 624 PRO LEU SER LEU ILE GLN GLY PRO PRO GLY THR GLY LYS SEQRES 17 B 624 THR VAL THR SER ALA THR ILE VAL TYR HIS LEU ALA ARG SEQRES 18 B 624 GLN GLY ASN GLY PRO VAL LEU VAL CYS ALA PRO SER ASN SEQRES 19 B 624 ILE ALA VAL ASP GLN LEU THR GLU LYS ILE HIS GLN THR SEQRES 20 B 624 GLY LEU LYS VAL VAL ARG LEU CYS ALA LYS SER ARG GLU SEQRES 21 B 624 ALA ILE ASP SER PRO VAL SER PHE LEU ALA LEU HIS ASN SEQRES 22 B 624 GLN ILE ARG ASN MET ASP SER MET PRO GLU LEU GLN LYS SEQRES 23 B 624 LEU GLN GLN LEU LYS ASP GLU THR GLY GLU LEU SER SER SEQRES 24 B 624 ALA ASP GLU LYS ARG TYR ARG ALA LEU LYS ARG THR ALA SEQRES 25 B 624 GLU ARG GLU LEU LEU MET ASN ALA ASP VAL ILE CYS CYS SEQRES 26 B 624 THR CYS VAL GLY ALA GLY ASP PRO ARG LEU ALA LYS MET SEQRES 27 B 624 GLN PHE ARG SER ILE LEU ILE ASP GLU SER THR GLN ALA SEQRES 28 B 624 THR GLU PRO GLU CYS MET VAL PRO VAL VAL LEU GLY ALA SEQRES 29 B 624 LYS GLN LEU ILE LEU VAL GLY ASP HIS CYS GLN LEU GLY SEQRES 30 B 624 PRO VAL VAL MET CYS LYS LYS ALA ALA LYS ALA GLY LEU SEQRES 31 B 624 SER GLN SER LEU PHE GLU ARG LEU VAL VAL LEU GLY ILE SEQRES 32 B 624 ARG PRO ILE ARG LEU GLN VAL GLN TYR ARG MET HIS PRO SEQRES 33 B 624 ALA LEU SER ALA PHE PRO SER ASN ILE PHE TYR GLU GLY SEQRES 34 B 624 SER LEU GLN ASN GLY VAL THR ALA ALA ASP ARG VAL LYS SEQRES 35 B 624 LYS GLY PHE ASP PHE GLN TRP PRO GLN PRO ASP LYS PRO SEQRES 36 B 624 MET PHE PHE TYR VAL THR GLN GLY GLN GLU GLU ILE ALA SEQRES 37 B 624 SER SER GLY THR SER TYR LEU ASN ARG THR GLU ALA ALA SEQRES 38 B 624 ASN VAL GLU LYS ILE THR THR LYS LEU LEU LYS ALA GLY SEQRES 39 B 624 ALA LYS PRO ASP GLN ILE GLY ILE ILE THR PRO TYR GLU SEQRES 40 B 624 GLY GLN ARG SER TYR LEU VAL GLN TYR MET GLN PHE SER SEQRES 41 B 624 GLY SER LEU HIS THR LYS LEU TYR GLN GLU VAL GLU ILE SEQRES 42 B 624 ALA SER VAL ASP ALA PHE GLN GLY ARG GLU LYS ASP PHE SEQRES 43 B 624 ILE ILE LEU SER CYS VAL ARG ALA ASN GLU HIS GLN GLY SEQRES 44 B 624 ILE GLY PHE LEU ASN ASP PRO ARG ARG LEU ASN VAL ALA SEQRES 45 B 624 LEU THR ARG ALA ARG TYR GLY VAL ILE ILE VAL GLY ASN SEQRES 46 B 624 PRO LYS ALA LEU SER LYS GLN PRO LEU TRP ASN HIS LEU SEQRES 47 B 624 LEU ASN TYR TYR LYS GLU GLN LYS VAL LEU VAL GLU GLY SEQRES 48 B 624 PRO LEU ASN ASN LEU ARG GLU SER LEU MET GLN PHE SER HET MG A1000 1 HET PO4 A 990 5 HET ADP A1001 27 HET MG B2000 1 HET PO4 B1990 5 HET ADP B1820 27 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 9 HOH *233(H2 O) HELIX 1 1 ASP A 298 GLN A 324 1 27 HELIX 2 2 SER A 417 ASP A 433 1 17 HELIX 3 3 GLY A 439 LEU A 446 1 8 HELIX 4 4 ASN A 472 GLN A 484 1 13 HELIX 5 5 GLY A 497 ARG A 511 1 15 HELIX 6 6 SER A 523 GLN A 536 1 14 HELIX 7 7 LYS A 547 ALA A 551 5 5 HELIX 8 8 ALA A 560 ARG A 566 1 7 HELIX 9 9 MET A 571 GLN A 579 1 9 HELIX 10 10 SER A 588 ASN A 609 1 22 HELIX 11 11 VAL A 618 ALA A 626 5 9 HELIX 12 12 GLU A 637 ALA A 641 5 5 HELIX 13 13 THR A 642 VAL A 651 1 10 HELIX 14 14 CYS A 672 GLY A 679 1 8 HELIX 15 15 SER A 683 LEU A 691 1 9 HELIX 16 16 HIS A 705 TYR A 717 1 13 HELIX 17 17 ALA A 727 VAL A 731 5 5 HELIX 18 18 ARG A 767 LYS A 782 1 16 HELIX 19 19 LYS A 786 ASP A 788 5 3 HELIX 20 20 TYR A 796 SER A 810 1 15 HELIX 21 21 HIS A 814 VAL A 821 1 8 HELIX 22 22 SER A 825 GLN A 830 1 6 HELIX 23 23 ASP A 855 LEU A 863 1 9 HELIX 24 24 ASN A 875 SER A 880 1 6 HELIX 25 25 GLN A 882 GLN A 895 1 14 HELIX 26 26 PRO A 902 LEU A 906 5 5 HELIX 27 27 ASP B 298 SER B 323 1 26 HELIX 28 28 SER B 417 ASP B 433 1 17 HELIX 29 29 GLY B 439 LEU B 446 1 8 HELIX 30 30 ASN B 472 LEU B 483 1 12 HELIX 31 31 GLY B 497 ARG B 511 1 15 HELIX 32 32 SER B 523 GLN B 536 1 14 HELIX 33 33 ALA B 560 ARG B 566 1 7 HELIX 34 34 MET B 571 GLN B 579 1 9 HELIX 35 35 SER B 588 ASN B 609 1 22 HELIX 36 36 VAL B 618 ALA B 626 5 9 HELIX 37 37 GLU B 637 ALA B 641 5 5 HELIX 38 38 THR B 642 VAL B 651 1 10 HELIX 39 39 CYS B 672 ALA B 678 1 7 HELIX 40 40 SER B 683 GLY B 692 1 10 HELIX 41 41 SER B 709 TYR B 717 1 9 HELIX 42 42 ARG B 767 LYS B 782 1 16 HELIX 43 43 LYS B 786 ASP B 788 5 3 HELIX 44 44 TYR B 796 SER B 810 1 15 HELIX 45 45 HIS B 814 GLU B 820 1 7 HELIX 46 46 SER B 825 GLN B 830 1 6 HELIX 47 47 ILE B 850 ASN B 854 5 5 HELIX 48 48 ASP B 855 LEU B 863 1 9 HELIX 49 49 ASN B 875 SER B 880 1 6 HELIX 50 50 GLN B 882 GLN B 895 1 14 HELIX 51 51 PRO B 902 LEU B 906 5 5 SHEET 1 A 7 GLN A 326 ILE A 329 0 SHEET 2 A 7 PHE A 409 PHE A 413 -1 O VAL A 411 N GLN A 326 SHEET 3 A 7 GLU A 361 TYR A 366 -1 N CYS A 363 O ASP A 412 SHEET 4 A 7 LYS A 375 LYS A 382 -1 O GLY A 378 N ILE A 362 SHEET 5 A 7 GLU A 390 LEU A 395 -1 O ALA A 392 N ILE A 381 SHEET 6 A 7 ARG A 341 THR A 346 -1 N PHE A 345 O ILE A 391 SHEET 7 A 7 VAL A 331 LEU A 335 -1 N ARG A 332 O TYR A 344 SHEET 1 B 7 VAL A 541 ARG A 543 0 SHEET 2 B 7 VAL A 612 THR A 616 1 O CYS A 614 N VAL A 542 SHEET 3 B 7 VAL A 517 ALA A 521 1 N VAL A 517 O ILE A 613 SHEET 4 B 7 SER A 632 ILE A 635 1 O LEU A 634 N CYS A 520 SHEET 5 B 7 GLN A 656 GLY A 661 1 O VAL A 660 N ILE A 635 SHEET 6 B 7 LEU A 487 GLN A 491 1 N SER A 488 O LEU A 659 SHEET 7 B 7 ILE A 696 ARG A 697 1 O ILE A 696 N LEU A 489 SHEET 1 C 2 VAL A 700 GLN A 701 0 SHEET 2 C 2 GLN A 722 ASN A 723 1 O GLN A 722 N GLN A 701 SHEET 1 D 5 MET A 746 VAL A 750 0 SHEET 2 D 5 ALA A 866 GLY A 874 1 O ILE A 872 N TYR A 749 SHEET 3 D 5 LYS A 834 CYS A 841 1 N LEU A 839 O VAL A 873 SHEET 4 D 5 ILE A 790 ILE A 793 1 N ILE A 793 O ILE A 838 SHEET 5 D 5 GLU A 822 ALA A 824 1 O GLU A 822 N ILE A 792 SHEET 1 E 2 GLU A 755 GLU A 756 0 SHEET 2 E 2 LEU A 765 ASN A 766 -1 O LEU A 765 N GLU A 756 SHEET 1 F 7 GLN B 326 ILE B 329 0 SHEET 2 F 7 PHE B 409 PHE B 413 -1 O PHE B 409 N ILE B 329 SHEET 3 F 7 GLU B 361 TYR B 366 -1 N CYS B 363 O ASP B 412 SHEET 4 F 7 LYS B 375 LYS B 382 -1 O GLY B 376 N LEU B 364 SHEET 5 F 7 GLU B 390 LEU B 395 -1 O ALA B 392 N ILE B 381 SHEET 6 F 7 ARG B 341 THR B 346 -1 N PHE B 345 O ILE B 391 SHEET 7 F 7 VAL B 331 LEU B 335 -1 N ARG B 332 O TYR B 344 SHEET 1 G 7 VAL B 541 ARG B 543 0 SHEET 2 G 7 VAL B 612 THR B 616 1 O CYS B 614 N VAL B 542 SHEET 3 G 7 VAL B 517 ALA B 521 1 N VAL B 519 O ILE B 613 SHEET 4 G 7 SER B 632 ILE B 635 1 O LEU B 634 N CYS B 520 SHEET 5 G 7 GLN B 656 GLY B 661 1 O VAL B 660 N ILE B 635 SHEET 6 G 7 LEU B 487 GLN B 491 1 N ILE B 490 O LEU B 659 SHEET 7 G 7 ILE B 696 ARG B 697 1 O ILE B 696 N LEU B 489 SHEET 1 H 2 VAL B 700 GLN B 701 0 SHEET 2 H 2 GLN B 722 ASN B 723 1 O GLN B 722 N GLN B 701 SHEET 1 I 6 GLU B 822 ALA B 824 0 SHEET 2 I 6 ILE B 790 ILE B 793 1 N ILE B 792 O GLU B 822 SHEET 3 I 6 LYS B 834 CYS B 841 1 O SER B 840 N ILE B 793 SHEET 4 I 6 ALA B 866 GLY B 874 1 O ILE B 871 N ILE B 837 SHEET 5 I 6 MET B 746 VAL B 750 1 N TYR B 749 O ILE B 872 SHEET 6 I 6 LEU B 898 VAL B 899 1 O VAL B 899 N VAL B 750 SHEET 1 J 2 GLU B 755 GLU B 756 0 SHEET 2 J 2 LEU B 765 ASN B 766 -1 O LEU B 765 N GLU B 756 SSBOND 1 CYS A 520 CYS A 615 1555 1555 2.13 SSBOND 2 CYS B 520 CYS B 615 1555 1555 2.11 LINK O HOH A 84 MG MG A1000 1555 1555 2.28 LINK OG1 THR A 499 MG MG A1000 1555 1555 2.48 LINK MG MG A1000 O1B ADP A1001 1555 1555 2.28 LINK O HOH B 39 MG MG B2000 1555 1555 2.38 LINK OG1 THR B 499 MG MG B2000 1555 1555 2.25 LINK O1B ADP B1820 MG MG B2000 1555 1555 2.08 SITE 1 AC1 4 HOH A 84 THR A 499 GLU A 637 ADP A1001 SITE 1 AC2 3 HOH B 39 THR B 499 ADP B1820 SITE 1 AC3 8 PRO A 494 GLY A 495 LYS A 498 GLN A 665 SITE 2 AC3 8 ARG A 703 GLY A 831 ARG A 865 ADP A1001 SITE 1 AC4 8 PRO B 494 GLY B 495 LYS B 498 GLN B 665 SITE 2 AC4 8 ARG B 703 GLY B 831 ARG B 865 ADP B1820 SITE 1 AC5 13 PRO A 469 ASP A 470 ASN A 472 GLN A 475 SITE 2 AC5 13 THR A 496 GLY A 497 LYS A 498 THR A 499 SITE 3 AC5 13 VAL A 500 LYS A 533 TYR A 702 PO4 A 990 SITE 4 AC5 13 MG A1000 SITE 1 AC6 15 HOH B 40 HOH B 178 PRO B 469 ASP B 470 SITE 2 AC6 15 ASN B 472 GLN B 475 THR B 496 GLY B 497 SITE 3 AC6 15 LYS B 498 THR B 499 VAL B 500 LYS B 533 SITE 4 AC6 15 TYR B 702 PO4 B1990 MG B2000 CRYST1 63.284 67.836 87.250 114.41 90.13 110.22 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015802 0.005820 0.002902 0.00000 SCALE2 0.000000 0.015710 0.007724 0.00000 SCALE3 0.000000 0.000000 0.012772 0.00000