HEADER HYDROLASE 03-APR-06 2GKO TITLE S41 PSYCHROPHILIC PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROBIAL SERINE PROTEINASES; SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.62; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: TA41; SOURCE 5 GENE: S41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS S41 PROTEASE TA41 PSYCHROPHILIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.L.WALTER,M.J.MEKEL,R.A.GRAYLING,F.H.ARNOLD,P.L.WINTRODE,O.ALMOG REVDAT 5 30-AUG-23 2GKO 1 REMARK LINK REVDAT 4 18-OCT-17 2GKO 1 REMARK REVDAT 3 28-APR-09 2GKO 1 JRNL REMARK REVDAT 2 24-FEB-09 2GKO 1 VERSN REVDAT 1 01-MAY-07 2GKO 0 JRNL AUTH O.ALMOG,A.GONZALEZ,N.GODIN,M.DE LEEUW,M.J.MEKEL,D.KLEIN, JRNL AUTH 2 S.BRAUN,G.SHOHAM,R.L.WALTER JRNL TITL THE CRYSTAL STRUCTURES OF THE PSYCHROPHILIC SUBTILISIN S41 JRNL TITL 2 AND THE MESOPHILIC SUBTILISIN SPH REVEAL THE SAME JRNL TITL 3 CALCIUM-LOADED STATE. JRNL REF PROTEINS V. 74 489 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 18655058 JRNL DOI 10.1002/PROT.22175 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 43171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2187 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.30 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 536 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BRUKER REMARK 200 DATA SCALING SOFTWARE : SAINT V5.I07 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 57.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.6 REMARK 200 DATA REDUNDANCY : 4.380 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 1555.400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.38 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YJA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-35% (W/V) PEG-8000 100MM HEPES (PH REMARK 280 7.0-7.2) 2UL PROTEIN @ 8.0MG/ML + 2UL RESERVOIR SOLUTION, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.38500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.50000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.69250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.07750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.69250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 131.07750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1101 O HOH A 1149 2.06 REMARK 500 O HOH A 895 O HOH A 1127 2.10 REMARK 500 O HOH A 976 O HOH A 1129 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 834 O HOH A 1134 8565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 107 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 157 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 298 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 -153.99 -167.08 REMARK 500 CYS A 65 41.21 -168.81 REMARK 500 LEU A 80 18.22 -153.59 REMARK 500 SER A 109 -108.94 173.55 REMARK 500 ASN A 285 63.58 -116.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 57 THR A 58 144.50 REMARK 500 ASP A 107 GLY A 108 -138.86 REMARK 500 SER A 109 GLY A 110 -144.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 610 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 29 OD1 REMARK 620 2 GLU A 49 OE1 81.3 REMARK 620 3 GLU A 49 OE2 123.1 50.4 REMARK 620 4 ASP A 97 OD2 94.0 105.4 75.6 REMARK 620 5 HOH A 630 O 171.9 99.5 61.8 93.5 REMARK 620 6 HOH A 657 O 87.9 80.6 108.1 173.9 84.3 REMARK 620 7 HOH A1126 O 92.3 165.0 141.5 88.5 85.0 85.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 613 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD1 REMARK 620 2 HOH A 775 O 72.7 REMARK 620 3 HOH A 829 O 77.8 149.6 REMARK 620 4 HOH A 892 O 77.4 79.0 87.8 REMARK 620 5 HOH A 893 O 155.0 131.4 78.9 110.4 REMARK 620 6 HOH A1029 O 78.5 104.8 75.8 153.2 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 614 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 180 O REMARK 620 2 LEU A 182 O 104.2 REMARK 620 3 ALA A 185 O 104.0 87.0 REMARK 620 4 HOH A 624 O 106.5 149.0 81.2 REMARK 620 5 HOH A 641 O 104.2 93.8 150.7 83.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 611 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 213 O REMARK 620 2 ASP A 216 OD1 86.6 REMARK 620 3 VAL A 218 O 165.2 82.9 REMARK 620 4 GLN A 220 OE1 89.4 114.1 85.4 REMARK 620 5 ASP A 223 OD1 104.6 160.5 88.4 82.4 REMARK 620 6 HOH A 626 O 96.4 82.8 92.5 162.5 80.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 612 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 286 OD1 REMARK 620 2 ILE A 287 O 85.6 REMARK 620 3 GLY A 294 O 100.1 89.0 REMARK 620 4 GLY A 296 O 88.9 172.8 96.5 REMARK 620 5 ASP A 298 OD2 176.4 92.1 82.7 93.1 REMARK 620 6 HOH A 642 O 85.5 87.2 173.1 87.7 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EA7 RELATED DB: PDB REMARK 900 CALCIUM LOADED SERINE PROTEASE DBREF 2GKO A 1 309 GB 40199 CAA45096 111 419 SEQRES 1 A 309 ALA ALA SER GLN SER THR PRO TRP GLY ILE LYS ALA ILE SEQRES 2 A 309 TYR ASN ASN SER ASN LEU THR SER THR SER GLY GLY ALA SEQRES 3 A 309 GLY ILE ASN ILE ALA VAL LEU ASP THR GLY VAL ASN THR SEQRES 4 A 309 ASN HIS PRO ASP LEU SER ASN ASN VAL GLU GLN CYS LYS SEQRES 5 A 309 ASP PHE THR VAL GLY THR ASN PHE THR ASP ASN SER CYS SEQRES 6 A 309 THR ASP ARG GLN GLY HIS GLY THR HIS VAL ALA GLY SER SEQRES 7 A 309 ALA LEU ALA ASN GLY GLY THR GLY SER GLY VAL TYR GLY SEQRES 8 A 309 VAL ALA PRO GLU ALA ASP LEU TRP ALA TYR LYS VAL LEU SEQRES 9 A 309 GLY ASP ASP GLY SER GLY TYR ALA ASP ASP ILE ALA GLU SEQRES 10 A 309 ALA ILE ARG HIS ALA GLY ASP GLN ALA THR ALA LEU ASN SEQRES 11 A 309 THR LYS VAL VAL ILE ASN MET SER LEU GLY SER SER GLY SEQRES 12 A 309 GLU SER SER LEU ILE THR ASN ALA VAL ASP TYR ALA TYR SEQRES 13 A 309 ASP LYS GLY VAL LEU ILE ILE ALA ALA ALA GLY ASN SER SEQRES 14 A 309 GLY PRO LYS PRO GLY SER ILE GLY TYR PRO GLY ALA LEU SEQRES 15 A 309 VAL ASN ALA VAL ALA VAL ALA ALA LEU GLU ASN THR ILE SEQRES 16 A 309 GLN ASN GLY THR TYR ARG VAL ALA ASP PHE SER SER ARG SEQRES 17 A 309 GLY HIS LYS ARG THR ALA GLY ASP TYR VAL ILE GLN LYS SEQRES 18 A 309 GLY ASP VAL GLU ILE SER ALA PRO GLY ALA ALA VAL TYR SEQRES 19 A 309 SER THR TRP PHE ASP GLY GLY TYR ALA THR ILE SER GLY SEQRES 20 A 309 THR SER MET ALA SER PRO HIS ALA ALA GLY LEU ALA ALA SEQRES 21 A 309 LYS ILE TRP ALA GLN SER PRO ALA ALA SER ASN VAL ASP SEQRES 22 A 309 VAL ARG GLY GLU LEU GLN THR ARG ALA SER VAL ASN ASP SEQRES 23 A 309 ILE LEU SER GLY ASN SER ALA GLY SER GLY ASP ASP ILE SEQRES 24 A 309 ALA SER GLY PHE GLY PHE ALA LYS VAL GLN HET CA A 610 1 HET CA A 611 1 HET CA A 612 1 HET CA A 613 1 HET NA A 614 1 HET PMS A 601 10 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM PMS PHENYLMETHANESULFONIC ACID FORMUL 2 CA 4(CA 2+) FORMUL 6 NA NA 1+ FORMUL 7 PMS C7 H8 O3 S FORMUL 8 HOH *536(H2 O) HELIX 1 1 PRO A 7 ASN A 15 1 9 HELIX 2 2 LEU A 44 ASN A 46 5 3 HELIX 3 3 GLY A 70 ALA A 81 1 12 HELIX 4 4 TYR A 111 ASN A 130 1 20 HELIX 5 5 SER A 145 LYS A 158 1 14 HELIX 6 6 HIS A 210 ALA A 214 5 5 HELIX 7 7 GLY A 247 SER A 266 1 20 HELIX 8 8 SER A 270 VAL A 284 1 15 SHEET 1 A 8 THR A 61 ASP A 62 0 SHEET 2 A 8 VAL A 48 ASP A 53 -1 N ASP A 53 O THR A 61 SHEET 3 A 8 ASP A 97 LYS A 102 1 O LYS A 102 N LYS A 52 SHEET 4 A 8 ASN A 29 ASP A 34 1 N ILE A 30 O ASP A 97 SHEET 5 A 8 VAL A 133 MET A 137 1 O ASN A 136 N ALA A 31 SHEET 6 A 8 LEU A 161 ALA A 165 1 O ILE A 163 N ILE A 135 SHEET 7 A 8 VAL A 186 GLN A 196 1 O VAL A 186 N ALA A 164 SHEET 8 A 8 THR A 199 VAL A 202 -1 O THR A 199 N GLN A 196 SHEET 1 B 8 THR A 61 ASP A 62 0 SHEET 2 B 8 VAL A 48 ASP A 53 -1 N ASP A 53 O THR A 61 SHEET 3 B 8 ASP A 97 LYS A 102 1 O LYS A 102 N LYS A 52 SHEET 4 B 8 ASN A 29 ASP A 34 1 N ILE A 30 O ASP A 97 SHEET 5 B 8 VAL A 133 MET A 137 1 O ASN A 136 N ALA A 31 SHEET 6 B 8 LEU A 161 ALA A 165 1 O ILE A 163 N ILE A 135 SHEET 7 B 8 VAL A 186 GLN A 196 1 O VAL A 186 N ALA A 164 SHEET 8 B 8 ILE A 226 PRO A 229 1 O ALA A 228 N LEU A 191 SHEET 1 C 2 VAL A 233 THR A 236 0 SHEET 2 C 2 TYR A 242 ILE A 245 -1 O ILE A 245 N VAL A 233 SSBOND 1 CYS A 51 CYS A 65 1555 1555 2.04 LINK OG SER A 249 S PMS A 601 1555 1555 1.71 LINK OD1 ASN A 29 CA CA A 610 1555 1555 2.18 LINK OE1 GLU A 49 CA CA A 610 1555 1555 2.25 LINK OE2 GLU A 49 CA CA A 610 1555 1555 2.73 LINK OD2 ASP A 97 CA CA A 610 1555 1555 2.16 LINK OD1 ASP A 114 CA CA A 613 1555 1555 2.44 LINK O GLY A 180 NA NA A 614 1555 1555 2.27 LINK O LEU A 182 NA NA A 614 1555 1555 2.33 LINK O ALA A 185 NA NA A 614 1555 1555 2.29 LINK O THR A 213 CA CA A 611 1555 1555 2.24 LINK OD1 ASP A 216 CA CA A 611 1555 1555 2.40 LINK O VAL A 218 CA CA A 611 1555 1555 2.29 LINK OE1 GLN A 220 CA CA A 611 1555 1555 2.28 LINK OD1 ASP A 223 CA CA A 611 1555 1555 2.34 LINK OD1 ASP A 286 CA CA A 612 1555 1555 2.31 LINK O ILE A 287 CA CA A 612 1555 1555 2.35 LINK O GLY A 294 CA CA A 612 1555 1555 2.26 LINK O GLY A 296 CA CA A 612 1555 1555 2.33 LINK OD2 ASP A 298 CA CA A 612 1555 1555 2.31 LINK CA CA A 610 O HOH A 630 1555 1555 2.29 LINK CA CA A 610 O HOH A 657 1555 1555 2.32 LINK CA CA A 610 O HOH A1126 1555 1555 2.17 LINK CA CA A 611 O HOH A 626 1555 1555 2.42 LINK CA CA A 612 O HOH A 642 1555 1555 2.44 LINK CA CA A 613 O HOH A 775 1555 1555 2.97 LINK CA CA A 613 O HOH A 829 1555 1555 2.96 LINK CA CA A 613 O HOH A 892 1555 1555 2.30 LINK CA CA A 613 O HOH A 893 1555 1555 2.59 LINK CA CA A 613 O HOH A1029 1555 1555 2.43 LINK NA NA A 614 O HOH A 624 1555 1555 2.37 LINK NA NA A 614 O HOH A 641 1555 1555 2.37 CISPEP 1 THR A 58 ASN A 59 0 -16.38 CISPEP 2 ASP A 106 ASP A 107 0 -22.05 CISPEP 3 GLY A 170 PRO A 171 0 6.97 CISPEP 4 TYR A 178 PRO A 179 0 6.43 SITE 1 AC1 6 ASN A 29 GLU A 49 ASP A 97 HOH A 630 SITE 2 AC1 6 HOH A 657 HOH A1126 SITE 1 AC2 6 THR A 213 ASP A 216 VAL A 218 GLN A 220 SITE 2 AC2 6 ASP A 223 HOH A 626 SITE 1 AC3 6 ASP A 286 ILE A 287 GLY A 294 GLY A 296 SITE 2 AC3 6 ASP A 298 HOH A 642 SITE 1 AC4 6 ASP A 114 HOH A 775 HOH A 829 HOH A 892 SITE 2 AC4 6 HOH A 893 HOH A1029 SITE 1 AC5 6 GLY A 180 ALA A 181 LEU A 182 ALA A 185 SITE 2 AC5 6 HOH A 624 HOH A 641 SITE 1 AC6 10 GLN A 69 HIS A 71 ASN A 168 ILE A 245 SITE 2 AC6 10 THR A 248 SER A 249 MET A 250 HOH A 896 SITE 3 AC6 10 HOH A 930 HOH A 960 CRYST1 61.000 61.000 174.770 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005722 0.00000