data_2GKR # _entry.id 2GKR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2GKR RCSB RCSB037240 WWPDB D_1000037240 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GKR _pdbx_database_status.recvd_initial_deposition_date 2006-04-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, T.W.' 1 'Qasim, M.A.' 2 'Laskowski Jr., M.' 3 'James, M.N.G.' 4 # _citation.id primary _citation.title ;Structural Insights into the Non-additivity Effects in the Sequence-to-Reactivity Algorithm for Serine Peptidases and their Inhibitors. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 367 _citation.page_first 527 _citation.page_last 546 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17266986 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.01.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lee, T.W.' 1 primary 'Qasim, M.A.' 2 primary 'Laskowski, M.' 3 primary 'James, M.N.' 4 # _cell.entry_id 2GKR _cell.length_a 22.900 _cell.length_b 34.429 _cell.length_c 25.794 _cell.angle_alpha 90.00 _cell.angle_beta 97.25 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GKR _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ovomucoid 5585.289 1 ? ? 'turkey ovomucoid third domain, del (1-5)' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 63 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC _entity_poly.pdbx_seq_one_letter_code_can VDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC _entity_poly.pdbx_strand_id I _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASP n 1 3 CYS n 1 4 SER n 1 5 GLU n 1 6 TYR n 1 7 PRO n 1 8 LYS n 1 9 PRO n 1 10 ALA n 1 11 CYS n 1 12 THR n 1 13 LEU n 1 14 GLU n 1 15 TYR n 1 16 ARG n 1 17 PRO n 1 18 LEU n 1 19 CYS n 1 20 GLY n 1 21 SER n 1 22 ASP n 1 23 ASN n 1 24 LYS n 1 25 THR n 1 26 TYR n 1 27 GLY n 1 28 ASN n 1 29 LYS n 1 30 CYS n 1 31 ASN n 1 32 PHE n 1 33 CYS n 1 34 ASN n 1 35 ALA n 1 36 VAL n 1 37 VAL n 1 38 GLU n 1 39 SER n 1 40 ASN n 1 41 GLY n 1 42 THR n 1 43 LEU n 1 44 THR n 1 45 LEU n 1 46 SER n 1 47 HIS n 1 48 PHE n 1 49 GLY n 1 50 LYS n 1 51 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name turkey _entity_src_gen.gene_src_genus Meleagris _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Meleagris gallopavo' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9103 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IOVO_MELGA _struct_ref.pdbx_db_accession P68390 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC _struct_ref.pdbx_align_begin 135 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GKR _struct_ref_seq.pdbx_strand_id I _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 51 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P68390 _struct_ref_seq.db_align_beg 135 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 185 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 56 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2GKR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.81 _exptl_crystal.density_percent_sol 31.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M HEPES-Na pH 7.5, 10% v/v isopropanol, 20% w/v PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2003-10-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.954 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.954 # _reflns.entry_id 2GKR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 1.16 _reflns.number_obs 13772 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.16 _reflns_shell.d_res_low 1.20 _reflns_shell.percent_possible_all 91.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2GKR _refine.ls_number_reflns_obs 12224 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 1.16 _refine.ls_percent_reflns_obs 97.79 _refine.ls_R_factor_obs 0.15027 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14718 _refine.ls_R_factor_R_free 0.17733 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1348 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.B_iso_mean 14.037 _refine.aniso_B[1][1] 0.36 _refine.aniso_B[2][2] -0.67 _refine.aniso_B[3][3] 0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.04 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.042 _refine.pdbx_overall_ESU_R_Free 0.041 _refine.overall_SU_ML 0.024 _refine.overall_SU_B 1.147 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 392 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 456 _refine_hist.d_res_high 1.16 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 400 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 329 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.672 1.973 ? 543 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.131 3.000 ? 782 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.224 5.000 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 27.370 25.294 ? 17 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.225 15.000 ? 65 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.488 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.137 0.200 ? 58 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.025 0.020 ? 446 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.015 0.020 ? 75 'X-RAY DIFFRACTION' ? r_nbd_refined 0.197 0.200 ? 79 'X-RAY DIFFRACTION' ? r_nbd_other 0.156 0.200 ? 317 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.181 0.200 ? 209 'X-RAY DIFFRACTION' ? r_nbtor_other 0.084 0.200 ? 224 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.179 0.200 ? 31 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.129 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.285 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.233 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.300 2.000 ? 333 'X-RAY DIFFRACTION' ? r_mcbond_other 1.209 2.000 ? 105 'X-RAY DIFFRACTION' ? r_mcangle_it 2.610 3.000 ? 409 'X-RAY DIFFRACTION' ? r_scbond_it 2.718 2.000 ? 184 'X-RAY DIFFRACTION' ? r_scangle_it 3.141 3.000 ? 134 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.160 _refine_ls_shell.d_res_low 1.190 _refine_ls_shell.number_reflns_R_work 824 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 90.09 _refine_ls_shell.R_factor_R_free 0.398 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GKR _struct.title 'Crystal structure of the N-terminally truncated OMTKY3-del(1-5)' _struct.pdbx_descriptor Ovomucoid _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GKR _struct_keywords.pdbx_keywords 'HYDROLASE INHIBITOR' _struct_keywords.text 'reactive-site loop, alpha-helix, antiparallel beta-sheet, HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biological unit of this protein is a monomer which is completely included in each asymmetric unit.' _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 28 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 39 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id I _struct_conf.beg_auth_seq_id 33 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id I _struct_conf.end_auth_seq_id 44 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 33 SG ? ? I CYS 8 I CYS 38 1_555 ? ? ? ? ? ? ? 2.064 ? disulf2 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 30 SG ? ? I CYS 16 I CYS 35 1_555 ? ? ? ? ? ? ? 2.044 ? disulf3 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 51 SG ? ? I CYS 24 I CYS 56 1_555 ? ? ? ? ? ? ? 2.041 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 6 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 11 _struct_mon_prot_cis.auth_asym_id I _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 7 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 12 _struct_mon_prot_cis.pdbx_auth_asym_id_2 I _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 8.13 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 25 ? TYR A 26 ? THR I 30 TYR I 31 A 2 LEU A 18 ? GLY A 20 ? LEU I 23 GLY I 25 A 3 LEU A 45 ? PHE A 48 ? LEU I 50 PHE I 53 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 26 ? O TYR I 31 N LEU A 18 ? N LEU I 23 A 2 3 N CYS A 19 ? N CYS I 24 O HIS A 47 ? O HIS I 52 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE CL I 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 VAL A 1 ? VAL I 6 . ? 1_455 ? 2 AC1 3 LEU A 45 ? LEU I 50 . ? 1_455 ? 3 AC1 3 LYS A 50 ? LYS I 55 . ? 1_555 ? # _database_PDB_matrix.entry_id 2GKR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GKR _atom_sites.fract_transf_matrix[1][1] 0.043668 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005555 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029045 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039081 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 6 6 VAL VAL I . n A 1 2 ASP 2 7 7 ASP ASP I . n A 1 3 CYS 3 8 8 CYS CYS I . n A 1 4 SER 4 9 9 SER SER I . n A 1 5 GLU 5 10 10 GLU GLU I . n A 1 6 TYR 6 11 11 TYR TYR I . n A 1 7 PRO 7 12 12 PRO PRO I . n A 1 8 LYS 8 13 13 LYS LYS I . n A 1 9 PRO 9 14 14 PRO PRO I . n A 1 10 ALA 10 15 15 ALA ALA I . n A 1 11 CYS 11 16 16 CYS CYS I . n A 1 12 THR 12 17 17 THR THR I . n A 1 13 LEU 13 18 18 LEU LEU I . n A 1 14 GLU 14 19 19 GLU GLU I . n A 1 15 TYR 15 20 20 TYR TYR I . n A 1 16 ARG 16 21 21 ARG ARG I . n A 1 17 PRO 17 22 22 PRO PRO I . n A 1 18 LEU 18 23 23 LEU LEU I . n A 1 19 CYS 19 24 24 CYS CYS I . n A 1 20 GLY 20 25 25 GLY GLY I . n A 1 21 SER 21 26 26 SER SER I . n A 1 22 ASP 22 27 27 ASP ASP I . n A 1 23 ASN 23 28 28 ASN ASN I . n A 1 24 LYS 24 29 29 LYS LYS I . n A 1 25 THR 25 30 30 THR THR I . n A 1 26 TYR 26 31 31 TYR TYR I . n A 1 27 GLY 27 32 32 GLY GLY I . n A 1 28 ASN 28 33 33 ASN ASN I . n A 1 29 LYS 29 34 34 LYS LYS I . n A 1 30 CYS 30 35 35 CYS CYS I . n A 1 31 ASN 31 36 36 ASN ASN I . n A 1 32 PHE 32 37 37 PHE PHE I . n A 1 33 CYS 33 38 38 CYS CYS I . n A 1 34 ASN 34 39 39 ASN ASN I . n A 1 35 ALA 35 40 40 ALA ALA I . n A 1 36 VAL 36 41 41 VAL VAL I . n A 1 37 VAL 37 42 42 VAL VAL I . n A 1 38 GLU 38 43 43 GLU GLU I . n A 1 39 SER 39 44 44 SER SER I . n A 1 40 ASN 40 45 45 ASN ASN I . n A 1 41 GLY 41 46 46 GLY GLY I . n A 1 42 THR 42 47 47 THR THR I . n A 1 43 LEU 43 48 48 LEU LEU I . n A 1 44 THR 44 49 49 THR THR I . n A 1 45 LEU 45 50 50 LEU LEU I . n A 1 46 SER 46 51 51 SER SER I . n A 1 47 HIS 47 52 52 HIS HIS I . n A 1 48 PHE 48 53 53 PHE PHE I . n A 1 49 GLY 49 54 54 GLY GLY I . n A 1 50 LYS 50 55 55 LYS LYS I . n A 1 51 CYS 51 56 56 CYS CYS I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 101 101 CL CL I . C 3 HOH 1 102 1 HOH HOH I . C 3 HOH 2 103 2 HOH HOH I . C 3 HOH 3 104 3 HOH HOH I . C 3 HOH 4 105 4 HOH HOH I . C 3 HOH 5 106 5 HOH HOH I . C 3 HOH 6 107 6 HOH HOH I . C 3 HOH 7 108 7 HOH HOH I . C 3 HOH 8 109 8 HOH HOH I . C 3 HOH 9 110 9 HOH HOH I . C 3 HOH 10 111 10 HOH HOH I . C 3 HOH 11 112 11 HOH HOH I . C 3 HOH 12 113 12 HOH HOH I . C 3 HOH 13 114 13 HOH HOH I . C 3 HOH 14 115 14 HOH HOH I . C 3 HOH 15 116 15 HOH HOH I . C 3 HOH 16 117 16 HOH HOH I . C 3 HOH 17 118 17 HOH HOH I . C 3 HOH 18 119 18 HOH HOH I . C 3 HOH 19 120 19 HOH HOH I . C 3 HOH 20 121 20 HOH HOH I . C 3 HOH 21 122 21 HOH HOH I . C 3 HOH 22 123 22 HOH HOH I . C 3 HOH 23 124 23 HOH HOH I . C 3 HOH 24 125 24 HOH HOH I . C 3 HOH 25 126 25 HOH HOH I . C 3 HOH 26 127 26 HOH HOH I . C 3 HOH 27 128 27 HOH HOH I . C 3 HOH 28 129 28 HOH HOH I . C 3 HOH 29 130 29 HOH HOH I . C 3 HOH 30 131 30 HOH HOH I . C 3 HOH 31 132 31 HOH HOH I . C 3 HOH 32 133 32 HOH HOH I . C 3 HOH 33 134 33 HOH HOH I . C 3 HOH 34 135 34 HOH HOH I . C 3 HOH 35 136 35 HOH HOH I . C 3 HOH 36 137 36 HOH HOH I . C 3 HOH 37 138 37 HOH HOH I . C 3 HOH 38 139 38 HOH HOH I . C 3 HOH 39 140 39 HOH HOH I . C 3 HOH 40 141 40 HOH HOH I . C 3 HOH 41 142 41 HOH HOH I . C 3 HOH 42 143 42 HOH HOH I . C 3 HOH 43 144 43 HOH HOH I . C 3 HOH 44 145 44 HOH HOH I . C 3 HOH 45 146 45 HOH HOH I . C 3 HOH 46 147 46 HOH HOH I . C 3 HOH 47 148 47 HOH HOH I . C 3 HOH 48 149 48 HOH HOH I . C 3 HOH 49 150 49 HOH HOH I . C 3 HOH 50 151 50 HOH HOH I . C 3 HOH 51 152 51 HOH HOH I . C 3 HOH 52 153 52 HOH HOH I . C 3 HOH 53 154 53 HOH HOH I . C 3 HOH 54 155 54 HOH HOH I . C 3 HOH 55 156 55 HOH HOH I . C 3 HOH 56 157 56 HOH HOH I . C 3 HOH 57 158 57 HOH HOH I . C 3 HOH 58 159 58 HOH HOH I . C 3 HOH 59 160 59 HOH HOH I . C 3 HOH 60 161 60 HOH HOH I . C 3 HOH 61 162 61 HOH HOH I . C 3 HOH 62 163 62 HOH HOH I . C 3 HOH 63 164 63 HOH HOH I . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.9880 _pdbx_refine_tls.origin_y -0.0590 _pdbx_refine_tls.origin_z 3.2960 _pdbx_refine_tls.T[1][1] -0.0394 _pdbx_refine_tls.T[2][2] -0.0111 _pdbx_refine_tls.T[3][3] -0.0628 _pdbx_refine_tls.T[1][2] 0.0045 _pdbx_refine_tls.T[1][3] -0.0014 _pdbx_refine_tls.T[2][3] -0.0020 _pdbx_refine_tls.L[1][1] 3.1191 _pdbx_refine_tls.L[2][2] 0.9447 _pdbx_refine_tls.L[3][3] 3.4575 _pdbx_refine_tls.L[1][2] 0.5065 _pdbx_refine_tls.L[1][3] -0.8537 _pdbx_refine_tls.L[2][3] -0.6098 _pdbx_refine_tls.S[1][1] -0.0004 _pdbx_refine_tls.S[1][2] -0.0098 _pdbx_refine_tls.S[1][3] -0.0519 _pdbx_refine_tls.S[2][1] 0.0073 _pdbx_refine_tls.S[2][2] 0.0084 _pdbx_refine_tls.S[2][3] 0.0208 _pdbx_refine_tls.S[3][1] 0.0293 _pdbx_refine_tls.S[3][2] -0.0426 _pdbx_refine_tls.S[3][3] -0.0080 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id I _pdbx_refine_tls_group.beg_auth_seq_id 6 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id I _pdbx_refine_tls_group.end_auth_seq_id 56 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 51 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 SCALEPACK 'data scaling' . ? 2 MOLREP phasing . ? 3 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 I _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 21 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 I _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 21 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 I _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 21 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 114.62 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -5.68 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id I _pdbx_validate_planes.auth_seq_id 21 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.123 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #