HEADER PROTEIN BINDING 04-APR-06 2GLE TITLE SOLUTION STRUCTURE OF NEURABIN SAM DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURABIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM DOMAIN (RESIDUES 986-1056); COMPND 5 SYNONYM: NEURABIN-I, NEURAL TISSUE-SPECIFIC F-ACTIN-BINDING PROTEIN COMPND 6 I, PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 9A, P180, PP1BP175; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: INHOUSE MADE VECTOR DERIVED FROM PET28A KEYWDS SAM DOMAIN, SCAFFOLD, PROTEIN PROTEIN INTERACTION, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.JU,J.HUDAK,W.PETI REVDAT 4 29-MAY-24 2GLE 1 REMARK REVDAT 3 09-MAR-22 2GLE 1 REMARK SEQADV REVDAT 2 24-FEB-09 2GLE 1 VERSN REVDAT 1 13-MAR-07 2GLE 0 JRNL AUTH T.JU,M.J.RAGUSA,J.HUDAK,A.C.NAIRN,W.PETI JRNL TITL STRUCTURAL CHARACTERIZATION OF THE NEURABIN SAM DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CNS 1.1 REMARK 3 AUTHORS : BRUKER (TOPSPIN), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD SCRIPTS, CNS REMARK 4 REMARK 4 2GLE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037263. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM NEURABIN SAM U-15N,13C, 20MM REMARK 210 PHOSPHATE BUFFER NA, PH 6.8, 90% REMARK 210 H2O, 10% D2O; 2MM NEURABIN SAM U- REMARK 210 15N, 20MM PHOSPHATE BUFFER NA, REMARK 210 PH 6.8, 90% H2O, 10%; 2MM REMARK 210 NEURABIN SAM, 0MM PHOSPHATE REMARK 210 BUFFER NA, PH 6.8, 100 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, CARA 1.5, ATNOS REMARK 210 1.1, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CRYO PROBE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 11.27 -152.83 REMARK 500 1 SER A 8 -71.73 -94.84 REMARK 500 1 VAL A 9 -68.13 -146.08 REMARK 500 1 SER A 34 -167.85 -107.37 REMARK 500 2 VAL A 9 -60.56 -141.58 REMARK 500 2 SER A 34 -169.26 -103.49 REMARK 500 2 LEU A 59 -66.55 -96.39 REMARK 500 3 SER A 8 -75.00 -104.48 REMARK 500 3 VAL A 9 -65.67 -139.06 REMARK 500 3 SER A 34 -168.23 -107.13 REMARK 500 3 THR A 52 17.02 55.72 REMARK 500 3 LYS A 73 -77.95 -63.01 REMARK 500 4 SER A 8 -72.98 -87.57 REMARK 500 4 VAL A 9 -63.71 -143.49 REMARK 500 4 SER A 53 -166.43 -72.99 REMARK 500 5 SER A 8 -89.28 -90.52 REMARK 500 5 VAL A 9 -59.88 -137.36 REMARK 500 6 HIS A 2 -16.09 -147.88 REMARK 500 6 SER A 8 -79.49 -102.10 REMARK 500 6 VAL A 9 -60.46 -139.38 REMARK 500 6 SER A 34 -169.26 -102.53 REMARK 500 6 MET A 51 -63.81 -105.71 REMARK 500 6 SER A 70 -6.89 -143.40 REMARK 500 7 SER A 8 -73.83 -104.62 REMARK 500 7 VAL A 9 -50.31 -140.79 REMARK 500 7 SER A 34 -166.71 -105.94 REMARK 500 7 MET A 51 -63.10 -103.57 REMARK 500 8 HIS A 2 10.86 -168.15 REMARK 500 8 SER A 8 -72.88 -90.69 REMARK 500 8 VAL A 9 -65.91 -143.56 REMARK 500 8 MET A 51 -67.58 -100.97 REMARK 500 8 THR A 52 -3.41 65.64 REMARK 500 9 SER A 8 -80.36 -95.43 REMARK 500 9 VAL A 9 -61.85 -146.03 REMARK 500 9 SER A 34 -166.03 -106.59 REMARK 500 10 SER A 8 -72.14 -103.58 REMARK 500 10 VAL A 9 -61.70 -139.57 REMARK 500 11 SER A 8 -75.51 -91.30 REMARK 500 11 VAL A 9 -63.83 -140.83 REMARK 500 11 SER A 34 -169.68 -105.76 REMARK 500 12 SER A 8 -79.42 -94.81 REMARK 500 12 VAL A 9 -59.66 -141.77 REMARK 500 12 LYS A 73 -73.97 -80.61 REMARK 500 13 HIS A 2 16.23 53.05 REMARK 500 13 SER A 8 -81.92 -96.41 REMARK 500 13 VAL A 9 -58.62 -139.71 REMARK 500 14 SER A 8 -80.06 -94.54 REMARK 500 14 VAL A 9 -60.43 -141.12 REMARK 500 15 SER A 8 -72.16 -99.83 REMARK 500 15 VAL A 9 -65.76 -141.48 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 18 ARG A 57 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2GLE A 4 74 UNP O35867 NEB1_RAT 986 1056 SEQADV 2GLE GLY A 1 UNP O35867 CLONING ARTIFACT SEQADV 2GLE HIS A 2 UNP O35867 CLONING ARTIFACT SEQADV 2GLE MET A 3 UNP O35867 CLONING ARTIFACT SEQRES 1 A 74 GLY HIS MET VAL HIS GLU TRP SER VAL GLN GLN VAL SER SEQRES 2 A 74 HIS TRP LEU VAL GLY LEU SER LEU ASP GLN TYR VAL SER SEQRES 3 A 74 GLU PHE SER ALA GLN ASN ILE SER GLY GLU GLN LEU LEU SEQRES 4 A 74 GLN LEU ASP GLY ASN LYS LEU LYS ALA LEU GLY MET THR SEQRES 5 A 74 SER SER GLN ASP ARG ALA LEU VAL LYS LYS LYS LEU LYS SEQRES 6 A 74 GLU MET LYS MET SER LEU GLU LYS ALA HELIX 1 1 MET A 3 TRP A 7 5 5 HELIX 2 2 VAL A 9 GLN A 11 5 3 HELIX 3 3 VAL A 12 LEU A 19 1 8 HELIX 4 4 LEU A 21 SER A 29 1 9 HELIX 5 5 SER A 34 GLN A 40 1 7 HELIX 6 6 ASP A 42 ALA A 48 1 7 HELIX 7 7 SER A 53 GLU A 66 1 14 HELIX 8 8 GLU A 66 ALA A 74 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1