HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-APR-06 2GLU TITLE THE CRYSTAL STRUCTURE OF YCGJ PROTEIN FROM BACILLUS SUBITILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YCGJ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YCGJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET KEYWDS NYSGXRC, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW KEYWDS 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR T.BURKE,J.GORMAN,L.SHAPIRO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 15-NOV-23 2GLU 1 REMARK REVDAT 4 30-AUG-23 2GLU 1 REMARK REVDAT 3 03-FEB-21 2GLU 1 AUTHOR REMARK SEQADV LINK REVDAT 2 24-FEB-09 2GLU 1 VERSN REVDAT 1 18-APR-06 2GLU 0 JRNL AUTH T.BURKE,J.GORMAN,L.SHAPIRO JRNL TITL THE CRYSTAL STRUCTURE OF YCGJ PROTEIN FROM BACILLUS JRNL TITL 2 SUBITILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0016 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 13505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 678 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 917 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.4900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.69000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : -4.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.472 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.328 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.041 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3908 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2610 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5302 ; 1.648 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6330 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 6.822 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;41.949 ;23.900 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 638 ;20.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.289 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4330 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 796 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1109 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2862 ; 0.216 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1895 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2109 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.219 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.108 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.258 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2752 ; 0.805 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 944 ; 0.109 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3762 ; 1.019 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1735 ; 1.509 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1540 ; 2.343 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .979 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1XXL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AM SULFATE, 0.1M NA CITRATE , PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.87100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 122.87100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.94950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.81950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.94950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.81950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 122.87100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.94950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.81950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.87100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.94950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.81950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 MSE B -8 REMARK 465 ALA B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS B 89 O2 SO4 B 409 2.08 REMARK 500 NE2 HIS A 89 O1 SO4 A 406 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 217 CB CYS A 217 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 95 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 9 70.55 54.72 REMARK 500 ALA A 23 3.45 -63.72 REMARK 500 SER A 71 71.39 -152.40 REMARK 500 ASP A 93 82.44 -151.96 REMARK 500 ASP A 108 14.39 57.14 REMARK 500 ARG A 141 135.55 -170.26 REMARK 500 TRP A 165 141.36 166.18 REMARK 500 ARG A 228 -134.85 -105.55 REMARK 500 GLU B 45 -46.63 -25.66 REMARK 500 SER B 71 69.93 -156.17 REMARK 500 CYS B 84 115.22 -163.94 REMARK 500 ALA B 87 -30.00 -131.89 REMARK 500 ASP B 108 13.38 52.57 REMARK 500 VAL B 140 -70.07 -93.35 REMARK 500 GLN B 163 121.89 176.06 REMARK 500 ARG B 228 -141.01 -112.99 REMARK 500 GLU B 229 -161.09 -126.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XXL RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-T1761 RELATED DB: TARGETDB DBREF 2GLU A 2 228 GB 2632602 CAB12110 2 228 DBREF 2GLU B 2 228 GB 2632602 CAB12110 2 228 SEQADV 2GLU MSE A -8 GB 2632602 CLONING ARTIFACT SEQADV 2GLU ALA A -7 GB 2632602 CLONING ARTIFACT SEQADV 2GLU HIS A -6 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS A -5 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS A -4 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS A -3 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS A -2 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS A -1 GB 2632602 EXPRESSION TAG SEQADV 2GLU SER A 0 GB 2632602 CLONING ARTIFACT SEQADV 2GLU LEU A 1 GB 2632602 CLONING ARTIFACT SEQADV 2GLU MSE A 4 GB 2632602 MET 4 MODIFIED RESIDUE SEQADV 2GLU MSE A 46 GB 2632602 MET 46 MODIFIED RESIDUE SEQADV 2GLU MSE A 151 GB 2632602 MET 151 MODIFIED RESIDUE SEQADV 2GLU GLU A 229 GB 2632602 CLONING ARTIFACT SEQADV 2GLU GLY A 230 GB 2632602 CLONING ARTIFACT SEQADV 2GLU MSE B -8 GB 2632602 CLONING ARTIFACT SEQADV 2GLU ALA B -7 GB 2632602 CLONING ARTIFACT SEQADV 2GLU HIS B -6 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS B -5 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS B -4 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS B -3 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS B -2 GB 2632602 EXPRESSION TAG SEQADV 2GLU HIS B -1 GB 2632602 EXPRESSION TAG SEQADV 2GLU SER B 0 GB 2632602 CLONING ARTIFACT SEQADV 2GLU LEU B 1 GB 2632602 CLONING ARTIFACT SEQADV 2GLU MSE B 4 GB 2632602 MET 4 MODIFIED RESIDUE SEQADV 2GLU MSE B 46 GB 2632602 MET 46 MODIFIED RESIDUE SEQADV 2GLU MSE B 151 GB 2632602 MET 151 MODIFIED RESIDUE SEQADV 2GLU GLU B 229 GB 2632602 CLONING ARTIFACT SEQADV 2GLU GLY B 230 GB 2632602 CLONING ARTIFACT SEQRES 1 A 239 MSE ALA HIS HIS HIS HIS HIS HIS SER LEU GLY LEU MSE SEQRES 2 A 239 ILE LYS THR ALA GLU CYS ARG ALA GLU HIS ARG VAL LEU SEQRES 3 A 239 ASP ILE GLY ALA GLY ALA GLY HIS THR ALA LEU ALA PHE SEQRES 4 A 239 SER PRO TYR VAL GLN GLU CYS ILE GLY VAL ASP ALA THR SEQRES 5 A 239 LYS GLU MSE VAL GLU VAL ALA SER SER PHE ALA GLN GLU SEQRES 6 A 239 LYS GLY VAL GLU ASN VAL ARG PHE GLN GLN GLY THR ALA SEQRES 7 A 239 GLU SER LEU PRO PHE PRO ASP ASP SER PHE ASP ILE ILE SEQRES 8 A 239 THR CYS ARG TYR ALA ALA HIS HIS PHE SER ASP VAL ARG SEQRES 9 A 239 LYS ALA VAL ARG GLU VAL ALA ARG VAL LEU LYS GLN ASP SEQRES 10 A 239 GLY ARG PHE LEU LEU VAL ASP HIS TYR ALA PRO GLU ASP SEQRES 11 A 239 PRO VAL LEU ASP GLU PHE VAL ASN HIS LEU ASN ARG LEU SEQRES 12 A 239 ARG ASP PRO SER HIS VAL ARG GLU SER SER LEU SER GLU SEQRES 13 A 239 TRP GLN ALA MSE PHE SER ALA ASN GLN LEU ALA TYR GLN SEQRES 14 A 239 ASP ILE GLN LYS TRP ASN LEU PRO ILE GLN TYR ASP SER SEQRES 15 A 239 TRP ILE LYS ARG GLY GLY THR PRO ALA ASP ARG GLU LYS SEQRES 16 A 239 GLN ILE ILE THR HIS LEU ASN HIS ALA SER ASP GLU ALA SEQRES 17 A 239 ARG ASP THR PHE CYS ILE THR LEU ASN GLN ASN GLY GLN SEQRES 18 A 239 PRO ILE SER PHE CYS LEU LYS ALA ILE LEU ILE GLN GLY SEQRES 19 A 239 ILE LYS ARG GLU GLY SEQRES 1 B 239 MSE ALA HIS HIS HIS HIS HIS HIS SER LEU GLY LEU MSE SEQRES 2 B 239 ILE LYS THR ALA GLU CYS ARG ALA GLU HIS ARG VAL LEU SEQRES 3 B 239 ASP ILE GLY ALA GLY ALA GLY HIS THR ALA LEU ALA PHE SEQRES 4 B 239 SER PRO TYR VAL GLN GLU CYS ILE GLY VAL ASP ALA THR SEQRES 5 B 239 LYS GLU MSE VAL GLU VAL ALA SER SER PHE ALA GLN GLU SEQRES 6 B 239 LYS GLY VAL GLU ASN VAL ARG PHE GLN GLN GLY THR ALA SEQRES 7 B 239 GLU SER LEU PRO PHE PRO ASP ASP SER PHE ASP ILE ILE SEQRES 8 B 239 THR CYS ARG TYR ALA ALA HIS HIS PHE SER ASP VAL ARG SEQRES 9 B 239 LYS ALA VAL ARG GLU VAL ALA ARG VAL LEU LYS GLN ASP SEQRES 10 B 239 GLY ARG PHE LEU LEU VAL ASP HIS TYR ALA PRO GLU ASP SEQRES 11 B 239 PRO VAL LEU ASP GLU PHE VAL ASN HIS LEU ASN ARG LEU SEQRES 12 B 239 ARG ASP PRO SER HIS VAL ARG GLU SER SER LEU SER GLU SEQRES 13 B 239 TRP GLN ALA MSE PHE SER ALA ASN GLN LEU ALA TYR GLN SEQRES 14 B 239 ASP ILE GLN LYS TRP ASN LEU PRO ILE GLN TYR ASP SER SEQRES 15 B 239 TRP ILE LYS ARG GLY GLY THR PRO ALA ASP ARG GLU LYS SEQRES 16 B 239 GLN ILE ILE THR HIS LEU ASN HIS ALA SER ASP GLU ALA SEQRES 17 B 239 ARG ASP THR PHE CYS ILE THR LEU ASN GLN ASN GLY GLN SEQRES 18 B 239 PRO ILE SER PHE CYS LEU LYS ALA ILE LEU ILE GLN GLY SEQRES 19 B 239 ILE LYS ARG GLU GLY MODRES 2GLU MSE A 4 MET SELENOMETHIONINE MODRES 2GLU MSE A 46 MET SELENOMETHIONINE MODRES 2GLU MSE A 151 MET SELENOMETHIONINE MODRES 2GLU MSE B 4 MET SELENOMETHIONINE MODRES 2GLU MSE B 46 MET SELENOMETHIONINE MODRES 2GLU MSE B 151 MET SELENOMETHIONINE HET MSE A 4 8 HET MSE A 46 8 HET MSE A 151 8 HET MSE B 4 8 HET MSE B 46 8 HET MSE B 151 8 HET SO4 A 402 5 HET SO4 A 404 5 HET SO4 A 406 5 HET SO4 A 410 5 HET SAM A 301 27 HET SO4 B 401 5 HET SO4 B 403 5 HET SO4 B 405 5 HET SO4 B 407 5 HET SO4 B 408 5 HET SO4 B 409 5 HET SO4 B 411 5 HET SAM B 302 27 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SO4 11(O4 S 2-) FORMUL 7 SAM 2(C15 H22 N6 O5 S) FORMUL 16 HOH *92(H2 O) HELIX 1 1 HIS A -3 GLU A 9 1 13 HELIX 2 2 GLY A 24 SER A 31 1 8 HELIX 3 3 PRO A 32 VAL A 34 5 3 HELIX 4 4 THR A 43 LYS A 57 1 15 HELIX 5 5 THR A 68 LEU A 72 5 5 HELIX 6 6 ALA A 87 PHE A 91 5 5 HELIX 7 7 ASP A 93 LEU A 105 1 13 HELIX 8 8 ASP A 121 ASP A 136 1 16 HELIX 9 9 SER A 144 ASN A 155 1 12 HELIX 10 10 TYR A 171 GLY A 179 1 9 HELIX 11 11 PRO A 181 HIS A 194 1 14 HELIX 12 12 SER A 196 PHE A 203 1 8 HELIX 13 13 HIS B -3 GLU B 9 1 13 HELIX 14 14 GLY B 24 SER B 31 1 8 HELIX 15 15 PRO B 32 VAL B 34 5 3 HELIX 16 16 THR B 43 LYS B 57 1 15 HELIX 17 17 THR B 68 LEU B 72 5 5 HELIX 18 18 ALA B 87 PHE B 91 5 5 HELIX 19 19 ASP B 93 VAL B 104 1 12 HELIX 20 20 ASP B 121 ASP B 136 1 16 HELIX 21 21 SER B 144 ALA B 154 1 11 HELIX 22 22 TYR B 171 GLY B 179 1 9 HELIX 23 23 PRO B 181 HIS B 194 1 14 HELIX 24 24 SER B 196 PHE B 203 1 8 SHEET 1 A 7 VAL A 62 GLN A 66 0 SHEET 2 A 7 GLU A 36 ASP A 41 1 N CYS A 37 O ARG A 63 SHEET 3 A 7 ARG A 15 ILE A 19 1 N VAL A 16 O GLU A 36 SHEET 4 A 7 ILE A 81 ARG A 85 1 O THR A 83 N ILE A 19 SHEET 5 A 7 ARG A 110 HIS A 116 1 O VAL A 114 N CYS A 84 SHEET 6 A 7 PRO A 213 LYS A 227 -1 O GLY A 225 N PHE A 111 SHEET 7 A 7 LEU A 157 GLN A 170 -1 N LEU A 167 O LEU A 218 SHEET 1 B 7 VAL A 62 GLN A 66 0 SHEET 2 B 7 GLU A 36 ASP A 41 1 N CYS A 37 O ARG A 63 SHEET 3 B 7 ARG A 15 ILE A 19 1 N VAL A 16 O GLU A 36 SHEET 4 B 7 ILE A 81 ARG A 85 1 O THR A 83 N ILE A 19 SHEET 5 B 7 ARG A 110 HIS A 116 1 O VAL A 114 N CYS A 84 SHEET 6 B 7 PRO A 213 LYS A 227 -1 O GLY A 225 N PHE A 111 SHEET 7 B 7 THR A 206 LEU A 207 -1 N THR A 206 O SER A 215 SHEET 1 C 7 VAL B 62 GLN B 66 0 SHEET 2 C 7 GLU B 36 ASP B 41 1 N CYS B 37 O ARG B 63 SHEET 3 C 7 ARG B 15 ILE B 19 1 N ASP B 18 O ILE B 38 SHEET 4 C 7 PHE B 79 ARG B 85 1 O ILE B 81 N LEU B 17 SHEET 5 C 7 LEU B 105 HIS B 116 1 O LEU B 112 N ILE B 82 SHEET 6 C 7 PRO B 213 LYS B 227 -1 O ILE B 223 N LEU B 113 SHEET 7 C 7 LEU B 157 GLN B 170 -1 N TRP B 165 O ALA B 220 SHEET 1 D 7 VAL B 62 GLN B 66 0 SHEET 2 D 7 GLU B 36 ASP B 41 1 N CYS B 37 O ARG B 63 SHEET 3 D 7 ARG B 15 ILE B 19 1 N ASP B 18 O ILE B 38 SHEET 4 D 7 PHE B 79 ARG B 85 1 O ILE B 81 N LEU B 17 SHEET 5 D 7 LEU B 105 HIS B 116 1 O LEU B 112 N ILE B 82 SHEET 6 D 7 PRO B 213 LYS B 227 -1 O ILE B 223 N LEU B 113 SHEET 7 D 7 THR B 206 LEU B 207 -1 N THR B 206 O ILE B 214 SSBOND 1 CYS B 204 CYS B 217 1555 1555 2.99 LINK C LEU A 3 N MSE A 4 1555 1555 1.32 LINK C MSE A 4 N ILE A 5 1555 1555 1.33 LINK C GLU A 45 N MSE A 46 1555 1555 1.32 LINK C MSE A 46 N VAL A 47 1555 1555 1.33 LINK C ALA A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N PHE A 152 1555 1555 1.33 LINK C LEU B 3 N MSE B 4 1555 1555 1.32 LINK C MSE B 4 N ILE B 5 1555 1555 1.33 LINK C GLU B 45 N MSE B 46 1555 1555 1.33 LINK C MSE B 46 N VAL B 47 1555 1555 1.33 LINK NE2 HIS B 90 O4 SO4 B 409 1555 1555 2.02 LINK C ALA B 150 N MSE B 151 1555 1555 1.32 LINK C MSE B 151 N PHE B 152 1555 1555 1.32 SITE 1 AC1 5 HIS A -2 HIS A -3 HIS A 25 ARG A 85 SITE 2 AC1 5 HOH A 434 SITE 1 AC2 7 HIS A -1 HIS A -2 HIS A -3 SER A 0 SITE 2 AC2 7 TYR A 86 TRP A 165 LEU A 167 SITE 1 AC3 5 TYR A 86 HIS A 89 HIS A 90 ASP A 136 SITE 2 AC3 5 SAM A 301 SITE 1 AC4 4 HIS A -2 PRO B 119 GLU B 120 ASP B 121 SITE 1 AC5 5 HIS B -3 HIS B -1 SER B 0 TYR B 86 SITE 2 AC5 5 TRP B 165 SITE 1 AC6 4 HIS B -3 HIS B -2 LEU B 1 ARG B 85 SITE 1 AC7 4 HIS B -3 ARG B 135 TRP B 174 ARG B 177 SITE 1 AC8 3 ASP B 108 ARG B 184 ARG B 228 SITE 1 AC9 3 ARG B 11 PRO B 137 ARG B 184 SITE 1 BC1 5 TYR B 86 HIS B 89 HIS B 90 ASP B 136 SITE 2 BC1 5 SAM B 302 SITE 1 BC2 3 ARG B 141 GLU B 147 HOH B 419 SITE 1 BC3 16 GLY A 20 ALA A 21 GLY A 22 THR A 26 SITE 2 BC3 16 ASP A 41 ALA A 42 THR A 43 MSE A 46 SITE 3 BC3 16 THR A 68 ALA A 69 GLU A 70 ARG A 85 SITE 4 BC3 16 TYR A 86 HIS A 90 SO4 A 406 HOH A 435 SITE 1 BC4 16 GLY B 20 GLY B 22 HIS B 25 THR B 26 SITE 2 BC4 16 ASP B 41 ALA B 42 THR B 43 GLY B 67 SITE 3 BC4 16 THR B 68 ALA B 69 GLU B 70 ARG B 85 SITE 4 BC4 16 TYR B 86 HIS B 90 PHE B 91 SO4 B 409 CRYST1 69.899 73.639 245.742 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014306 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004069 0.00000