data_2GMK # _entry.id 2GMK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GMK pdb_00002gmk 10.2210/pdb2gmk/pdb RCSB RCSB037298 ? ? WWPDB D_1000037298 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-25 2 'Structure model' 1 1 2008-01-15 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2019-12-25 5 'Structure model' 2 1 2021-10-20 6 'Structure model' 2 2 2023-08-30 7 'Structure model' 2 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Polymer sequence' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Refinement description' 10 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_poly 2 4 'Structure model' pdbx_struct_mod_residue 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond 10 6 'Structure model' pdbx_initial_refinement_model 11 7 'Structure model' pdbx_entry_details 12 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 2 4 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2GMK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-04-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id GO.80161 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bae, E.' 1 'Lee, J.E.' 2 'Raines, R.T.' 3 'Wesenberg, G.E.' 4 'Phillips Jr., G.N.' 5 'Bitto, E.' 6 'Bingman, C.A.' 7 'Center for Eukaryotic Structural Genomics (CESG)' 8 # _citation.id primary _citation.title 'Structural basis for catalysis by onconase.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 375 _citation.page_first 165 _citation.page_last 177 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18001769 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.09.089 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, J.E.' 1 ? primary 'Bae, E.' 2 ? primary 'Bingman, C.A.' 3 ? primary 'Phillips Jr., G.N.' 4 ? primary 'Raines, R.T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'P-30 protein' 11800.611 1 3.1.27.- T89N,E91A ? ? 2 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 4 ? ? ? ? 3 water nat water 18.015 196 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Onconase # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(PCA)DWLTFQKKHITNTRDVDCDNIMSTNLFHCKDKNTFIYSRPEPVKAICKGIIASKNVLTTSEFYLSDCNVTSRPCK YKLKKSTNKFCVNCANQAPVHFVGVGSC ; _entity_poly.pdbx_seq_one_letter_code_can ;QDWLTFQKKHITNTRDVDCDNIMSTNLFHCKDKNTFIYSRPEPVKAICKGIIASKNVLTTSEFYLSDCNVTSRPCKYKLK KSTNKFCVNCANQAPVHFVGVGSC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GO.80161 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ADENOSINE MONOPHOSPHATE' AMP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PCA n 1 2 ASP n 1 3 TRP n 1 4 LEU n 1 5 THR n 1 6 PHE n 1 7 GLN n 1 8 LYS n 1 9 LYS n 1 10 HIS n 1 11 ILE n 1 12 THR n 1 13 ASN n 1 14 THR n 1 15 ARG n 1 16 ASP n 1 17 VAL n 1 18 ASP n 1 19 CYS n 1 20 ASP n 1 21 ASN n 1 22 ILE n 1 23 MET n 1 24 SER n 1 25 THR n 1 26 ASN n 1 27 LEU n 1 28 PHE n 1 29 HIS n 1 30 CYS n 1 31 LYS n 1 32 ASP n 1 33 LYS n 1 34 ASN n 1 35 THR n 1 36 PHE n 1 37 ILE n 1 38 TYR n 1 39 SER n 1 40 ARG n 1 41 PRO n 1 42 GLU n 1 43 PRO n 1 44 VAL n 1 45 LYS n 1 46 ALA n 1 47 ILE n 1 48 CYS n 1 49 LYS n 1 50 GLY n 1 51 ILE n 1 52 ILE n 1 53 ALA n 1 54 SER n 1 55 LYS n 1 56 ASN n 1 57 VAL n 1 58 LEU n 1 59 THR n 1 60 THR n 1 61 SER n 1 62 GLU n 1 63 PHE n 1 64 TYR n 1 65 LEU n 1 66 SER n 1 67 ASP n 1 68 CYS n 1 69 ASN n 1 70 VAL n 1 71 THR n 1 72 SER n 1 73 ARG n 1 74 PRO n 1 75 CYS n 1 76 LYS n 1 77 TYR n 1 78 LYS n 1 79 LEU n 1 80 LYS n 1 81 LYS n 1 82 SER n 1 83 THR n 1 84 ASN n 1 85 LYS n 1 86 PHE n 1 87 CYS n 1 88 VAL n 1 89 ASN n 1 90 CYS n 1 91 ALA n 1 92 ASN n 1 93 GLN n 1 94 ALA n 1 95 PRO n 1 96 VAL n 1 97 HIS n 1 98 PHE n 1 99 VAL n 1 100 GLY n 1 101 VAL n 1 102 GLY n 1 103 SER n 1 104 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'northern leopard frog' _entity_src_gen.gene_src_genus Rana _entity_src_gen.pdbx_gene_src_gene RNP30_RANPI _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rana pipiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8404 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PCA 1 1 1 PCA PCA A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 CYS 87 87 87 CYS CYS A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 HIS 97 97 97 HIS HIS A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 CYS 104 104 104 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP 1 940 941 AMP AMP A . C 2 AMP 1 941 941 AMP AMP A . D 2 AMP 1 942 941 AMP AMP A . E 2 AMP 1 943 941 AMP AMP A . F 3 HOH 1 944 1 HOH HOH A . F 3 HOH 2 945 2 HOH HOH A . F 3 HOH 3 946 3 HOH HOH A . F 3 HOH 4 947 4 HOH HOH A . F 3 HOH 5 948 5 HOH HOH A . F 3 HOH 6 949 6 HOH HOH A . F 3 HOH 7 950 7 HOH HOH A . F 3 HOH 8 951 8 HOH HOH A . F 3 HOH 9 952 9 HOH HOH A . F 3 HOH 10 953 10 HOH HOH A . F 3 HOH 11 954 11 HOH HOH A . F 3 HOH 12 955 12 HOH HOH A . F 3 HOH 13 956 13 HOH HOH A . F 3 HOH 14 957 14 HOH HOH A . F 3 HOH 15 958 15 HOH HOH A . F 3 HOH 16 959 16 HOH HOH A . F 3 HOH 17 960 17 HOH HOH A . F 3 HOH 18 961 18 HOH HOH A . F 3 HOH 19 962 19 HOH HOH A . F 3 HOH 20 963 20 HOH HOH A . F 3 HOH 21 964 21 HOH HOH A . F 3 HOH 22 965 22 HOH HOH A . F 3 HOH 23 966 23 HOH HOH A . F 3 HOH 24 967 24 HOH HOH A . F 3 HOH 25 968 25 HOH HOH A . F 3 HOH 26 969 26 HOH HOH A . F 3 HOH 27 970 27 HOH HOH A . F 3 HOH 28 971 28 HOH HOH A . F 3 HOH 29 972 29 HOH HOH A . F 3 HOH 30 973 30 HOH HOH A . F 3 HOH 31 974 31 HOH HOH A . F 3 HOH 32 975 32 HOH HOH A . F 3 HOH 33 976 33 HOH HOH A . F 3 HOH 34 977 34 HOH HOH A . F 3 HOH 35 978 35 HOH HOH A . F 3 HOH 36 979 36 HOH HOH A . F 3 HOH 37 980 37 HOH HOH A . F 3 HOH 38 981 38 HOH HOH A . F 3 HOH 39 982 39 HOH HOH A . F 3 HOH 40 983 40 HOH HOH A . F 3 HOH 41 984 41 HOH HOH A . F 3 HOH 42 985 42 HOH HOH A . F 3 HOH 43 986 43 HOH HOH A . F 3 HOH 44 987 44 HOH HOH A . F 3 HOH 45 988 45 HOH HOH A . F 3 HOH 46 989 46 HOH HOH A . F 3 HOH 47 990 47 HOH HOH A . F 3 HOH 48 991 48 HOH HOH A . F 3 HOH 49 992 49 HOH HOH A . F 3 HOH 50 993 50 HOH HOH A . F 3 HOH 51 994 51 HOH HOH A . F 3 HOH 52 995 52 HOH HOH A . F 3 HOH 53 996 53 HOH HOH A . F 3 HOH 54 997 54 HOH HOH A . F 3 HOH 55 998 55 HOH HOH A . F 3 HOH 56 999 56 HOH HOH A . F 3 HOH 57 1000 57 HOH HOH A . F 3 HOH 58 1001 58 HOH HOH A . F 3 HOH 59 1002 59 HOH HOH A . F 3 HOH 60 1003 60 HOH HOH A . F 3 HOH 61 1004 61 HOH HOH A . F 3 HOH 62 1005 62 HOH HOH A . F 3 HOH 63 1006 63 HOH HOH A . F 3 HOH 64 1007 64 HOH HOH A . F 3 HOH 65 1008 65 HOH HOH A . F 3 HOH 66 1009 66 HOH HOH A . F 3 HOH 67 1010 67 HOH HOH A . F 3 HOH 68 1011 68 HOH HOH A . F 3 HOH 69 1012 69 HOH HOH A . F 3 HOH 70 1013 70 HOH HOH A . F 3 HOH 71 1014 71 HOH HOH A . F 3 HOH 72 1015 72 HOH HOH A . F 3 HOH 73 1016 73 HOH HOH A . F 3 HOH 74 1017 74 HOH HOH A . F 3 HOH 75 1018 75 HOH HOH A . F 3 HOH 76 1019 76 HOH HOH A . F 3 HOH 77 1020 77 HOH HOH A . F 3 HOH 78 1021 78 HOH HOH A . F 3 HOH 79 1022 79 HOH HOH A . F 3 HOH 80 1023 80 HOH HOH A . F 3 HOH 81 1024 81 HOH HOH A . F 3 HOH 82 1025 82 HOH HOH A . F 3 HOH 83 1026 83 HOH HOH A . F 3 HOH 84 1027 84 HOH HOH A . F 3 HOH 85 1028 85 HOH HOH A . F 3 HOH 86 1029 86 HOH HOH A . F 3 HOH 87 1030 87 HOH HOH A . F 3 HOH 88 1031 88 HOH HOH A . F 3 HOH 89 1032 89 HOH HOH A . F 3 HOH 90 1033 90 HOH HOH A . F 3 HOH 91 1034 91 HOH HOH A . F 3 HOH 92 1035 92 HOH HOH A . F 3 HOH 93 1036 93 HOH HOH A . F 3 HOH 94 1037 94 HOH HOH A . F 3 HOH 95 1038 95 HOH HOH A . F 3 HOH 96 1039 96 HOH HOH A . F 3 HOH 97 1040 97 HOH HOH A . F 3 HOH 98 1041 98 HOH HOH A . F 3 HOH 99 1042 99 HOH HOH A . F 3 HOH 100 1043 100 HOH HOH A . F 3 HOH 101 1044 101 HOH HOH A . F 3 HOH 102 1045 102 HOH HOH A . F 3 HOH 103 1046 103 HOH HOH A . F 3 HOH 104 1047 104 HOH HOH A . F 3 HOH 105 1048 105 HOH HOH A . F 3 HOH 106 1049 106 HOH HOH A . F 3 HOH 107 1050 107 HOH HOH A . F 3 HOH 108 1051 108 HOH HOH A . F 3 HOH 109 1052 109 HOH HOH A . F 3 HOH 110 1053 110 HOH HOH A . F 3 HOH 111 1054 111 HOH HOH A . F 3 HOH 112 1055 112 HOH HOH A . F 3 HOH 113 1056 113 HOH HOH A . F 3 HOH 114 1057 114 HOH HOH A . F 3 HOH 115 1058 115 HOH HOH A . F 3 HOH 116 1059 116 HOH HOH A . F 3 HOH 117 1060 117 HOH HOH A . F 3 HOH 118 1061 118 HOH HOH A . F 3 HOH 119 1062 119 HOH HOH A . F 3 HOH 120 1063 120 HOH HOH A . F 3 HOH 121 1064 121 HOH HOH A . F 3 HOH 122 1065 122 HOH HOH A . F 3 HOH 123 1066 123 HOH HOH A . F 3 HOH 124 1067 124 HOH HOH A . F 3 HOH 125 1068 125 HOH HOH A . F 3 HOH 126 1069 126 HOH HOH A . F 3 HOH 127 1070 127 HOH HOH A . F 3 HOH 128 1071 128 HOH HOH A . F 3 HOH 129 1072 129 HOH HOH A . F 3 HOH 130 1073 130 HOH HOH A . F 3 HOH 131 1074 131 HOH HOH A . F 3 HOH 132 1075 132 HOH HOH A . F 3 HOH 133 1076 133 HOH HOH A . F 3 HOH 134 1077 134 HOH HOH A . F 3 HOH 135 1078 135 HOH HOH A . F 3 HOH 136 1079 136 HOH HOH A . F 3 HOH 137 1080 137 HOH HOH A . F 3 HOH 138 1081 138 HOH HOH A . F 3 HOH 139 1082 139 HOH HOH A . F 3 HOH 140 1083 140 HOH HOH A . F 3 HOH 141 1084 141 HOH HOH A . F 3 HOH 142 1085 142 HOH HOH A . F 3 HOH 143 1086 143 HOH HOH A . F 3 HOH 144 1087 144 HOH HOH A . F 3 HOH 145 1088 145 HOH HOH A . F 3 HOH 146 1089 146 HOH HOH A . F 3 HOH 147 1090 147 HOH HOH A . F 3 HOH 148 1091 148 HOH HOH A . F 3 HOH 149 1092 149 HOH HOH A . F 3 HOH 150 1093 150 HOH HOH A . F 3 HOH 151 1094 151 HOH HOH A . F 3 HOH 152 1095 152 HOH HOH A . F 3 HOH 153 1096 153 HOH HOH A . F 3 HOH 154 1097 154 HOH HOH A . F 3 HOH 155 1098 155 HOH HOH A . F 3 HOH 156 1099 156 HOH HOH A . F 3 HOH 157 1100 157 HOH HOH A . F 3 HOH 158 1101 158 HOH HOH A . F 3 HOH 159 1102 159 HOH HOH A . F 3 HOH 160 1103 160 HOH HOH A . F 3 HOH 161 1104 161 HOH HOH A . F 3 HOH 162 1105 162 HOH HOH A . F 3 HOH 163 1106 163 HOH HOH A . F 3 HOH 164 1107 164 HOH HOH A . F 3 HOH 165 1108 165 HOH HOH A . F 3 HOH 166 1109 166 HOH HOH A . F 3 HOH 167 1110 167 HOH HOH A . F 3 HOH 168 1111 168 HOH HOH A . F 3 HOH 169 1112 169 HOH HOH A . F 3 HOH 170 1113 170 HOH HOH A . F 3 HOH 171 1114 171 HOH HOH A . F 3 HOH 172 1115 172 HOH HOH A . F 3 HOH 173 1116 173 HOH HOH A . F 3 HOH 174 1117 175 HOH HOH A . F 3 HOH 175 1118 176 HOH HOH A . F 3 HOH 176 1119 177 HOH HOH A . F 3 HOH 177 1120 178 HOH HOH A . F 3 HOH 178 1121 179 HOH HOH A . F 3 HOH 179 1122 180 HOH HOH A . F 3 HOH 180 1123 181 HOH HOH A . F 3 HOH 181 1124 182 HOH HOH A . F 3 HOH 182 1125 183 HOH HOH A . F 3 HOH 183 1126 184 HOH HOH A . F 3 HOH 184 1127 185 HOH HOH A . F 3 HOH 185 1128 186 HOH HOH A . F 3 HOH 186 1129 187 HOH HOH A . F 3 HOH 187 1130 188 HOH HOH A . F 3 HOH 188 1131 189 HOH HOH A . F 3 HOH 189 1132 190 HOH HOH A . F 3 HOH 190 1133 191 HOH HOH A . F 3 HOH 191 1134 192 HOH HOH A . F 3 HOH 192 1135 193 HOH HOH A . F 3 HOH 193 1136 194 HOH HOH A . F 3 HOH 194 1137 195 HOH HOH A . F 3 HOH 195 1138 196 HOH HOH A . F 3 HOH 196 1139 198 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SAINT . ? package ? ? 'data scaling' http://www.bruker-axs.de/index.html ? ? 1 MOLREP . ? program 'A. Vagin' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.701 'OCT. 28, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _cell.length_a 28.994 _cell.length_b 52.112 _cell.length_c 66.142 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2GMK _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.Int_Tables_number 19 _symmetry.entry_id 2GMK _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2GMK # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;PROTEIN SOLUTION (21.4 MG/ML PROTEIN) MIXED IN A 1:1 RATIO WITH THE WELL SOLUTION (30.6% MEPEG 2K, 0.050 M AMP, 0.090 M BisTris pH 6.5) Crystals cryo-protected with the well solution supplemented with 5% ethylene glycol, vapor diffusion, hanging drop, temperature 293K, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER PROTEUM-R' _diffrn_detector.pdbx_collection_date 2006-01-27 _diffrn_detector.details 'MONTEL OPTICS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Graded Multilayer' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2GMK _reflns.d_resolution_low 66.142 _reflns.d_resolution_high 1.65 _reflns.number_obs 12645 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.0542 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 26.59 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 40.66 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.7 1.65 1046 99.6 0.6625 ? 5.07 ? 3.32 ? ? ? ? ? 1 1.75 1.7 927 100.0 0.506 ? 8.7 ? 5.41 ? ? ? ? ? 2 1.8 1.75 856 100.0 0.3799 ? 11.97 ? 8.09 ? ? ? ? ? 3 1.85 1.8 742 99.7 0.3011 ? 13.61 ? 10.04 ? ? ? ? ? 4 1.9 1.85 684 100.0 0.2289 ? 14.14 ? 11.94 ? ? ? ? ? 5 2.0 1.9 1165 100.0 0.1526 ? 14.92 ? 16.36 ? ? ? ? ? 6 2.1 2.0 950 100.0 0.1179 ? 16.6 ? 21.75 ? ? ? ? ? 7 2.2 2.1 797 100.0 0.1052 ? 18.87 ? 25.79 ? ? ? ? ? 8 2.3 2.2 655 100.0 0.107 ? 21.84 ? 29.6 ? ? ? ? ? 9 2.45 2.3 808 100.0 0.0857 ? 26.62 ? 39.65 ? ? ? ? ? 10 2.6 2.45 636 99.8 0.0761 ? 32.13 ? 48.43 ? ? ? ? ? 11 2.8 2.6 643 100.0 0.0627 ? 38.67 ? 60.9 ? ? ? ? ? 12 3.1 2.8 694 100.0 0.0539 ? 50.52 ? 80.79 ? ? ? ? ? 13 3.6 3.1 706 100.0 0.0472 ? 60.39 ? 107.82 ? ? ? ? ? 14 4.65 3.6 691 100.0 0.0394 ? 64.54 ? 127.75 ? ? ? ? ? 15 66.142 4.65 645 99.1 0.0426 ? 63.76 ? 125.63 ? ? ? ? ? 16 # _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.B_iso_mean 19.346 _refine.aniso_B[1][1] -0.717 _refine.aniso_B[2][2] -0.534 _refine.aniso_B[3][3] 1.250 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_d_res_high 1.650 _refine.ls_d_res_low 40.927 _refine.ls_number_reflns_R_free 612 _refine.ls_number_reflns_obs 12597 _refine.ls_R_factor_R_work 0.1653 _refine.ls_R_factor_R_free 0.2173 _refine.ls_R_factor_all 0.168 _refine.ls_wR_factor_R_work 0.159 _refine.ls_wR_factor_R_free 0.199 _refine.ls_percent_reflns_obs 99.889 _refine.ls_percent_reflns_R_free 4.858 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.pdbx_overall_ESU_R 0.109 _refine.pdbx_overall_ESU_R_Free 0.113 _refine.overall_SU_ML 0.068 _refine.overall_SU_B 1.973 _refine.entry_id 2GMK _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'pdb entry 1onc' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 859 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 92 _refine_hist.number_atoms_solvent 196 _refine_hist.number_atoms_total 1147 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 40.927 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 987 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1361 1.718 2.064 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 115 6.904 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39 36.399 24.615 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 166 12.735 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 3.664 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 151 0.104 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 706 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 446 0.198 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 678 0.301 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 154 0.124 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 41 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 40 0.114 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 549 1.064 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 892 1.924 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 513 3.193 6.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 463 4.723 8.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 20 1.693 1.650 919 99.456 857 0.222 0.228 57 0.316 . . . . 'X-RAY DIFFRACTION' 20 1.739 1.693 875 100.000 834 0.204 0.209 41 0.305 . . . . 'X-RAY DIFFRACTION' 20 1.789 1.739 864 100.000 824 0.189 0.193 40 0.31 . . . . 'X-RAY DIFFRACTION' 20 1.844 1.789 831 99.759 789 0.195 0.197 40 0.235 . . . . 'X-RAY DIFFRACTION' 20 1.905 1.844 820 100.000 767 0.177 0.181 53 0.233 . . . . 'X-RAY DIFFRACTION' 20 1.971 1.905 789 100.000 762 0.166 0.169 27 0.239 . . . . 'X-RAY DIFFRACTION' 20 2.046 1.971 777 100.000 734 0.16 0.166 43 0.281 . . . . 'X-RAY DIFFRACTION' 20 2.129 2.046 738 100.000 702 0.161 0.162 36 0.18 . . . . 'X-RAY DIFFRACTION' 20 2.223 2.129 722 100.000 695 0.165 0.168 27 0.261 . . . . 'X-RAY DIFFRACTION' 20 2.332 2.223 665 100.000 636 0.161 0.162 29 0.179 . . . . 'X-RAY DIFFRACTION' 20 2.457 2.332 651 100.000 616 0.166 0.167 35 0.2 . . . . 'X-RAY DIFFRACTION' 20 2.606 2.457 632 99.842 600 0.169 0.172 31 0.217 . . . . 'X-RAY DIFFRACTION' 20 2.785 2.606 570 100.000 545 0.171 0.175 25 0.252 . . . . 'X-RAY DIFFRACTION' 20 3.007 2.785 553 100.000 529 0.161 0.163 24 0.203 . . . . 'X-RAY DIFFRACTION' 20 3.292 3.007 505 100.000 472 0.147 0.149 33 0.174 . . . . 'X-RAY DIFFRACTION' 20 3.678 3.292 465 100.000 449 0.136 0.137 16 0.196 . . . . 'X-RAY DIFFRACTION' 20 4.241 3.678 413 100.000 397 0.128 0.130 16 0.198 . . . . 'X-RAY DIFFRACTION' 20 5.180 4.241 354 100.000 337 0.144 0.143 17 0.139 . . . . 'X-RAY DIFFRACTION' 20 7.268 5.180 293 100.000 282 0.187 0.188 11 0.206 . . . . 'X-RAY DIFFRACTION' 20 40.927 7.268 175 96.571 158 0.275 0.276 11 0.297 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 2GMK _struct.title 'Crystal structure of onconase double mutant with spontaneously-assembled (AMP) 4 stack' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Onconase, P-30 protein, ribonuclease, anti-tumor, Protein Structure Initiative, PSI, Center for Eukaryotic Structural Genomics, CESG, HYDROLASE ; _struct_keywords.entry_id 2GMK _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNP30_RANPI _struct_ref.pdbx_db_accession P22069 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GMK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22069 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 104 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GMK ASN A 89 ? UNP P22069 THR 89 'engineered mutation' 89 1 1 2GMK ALA A 91 ? UNP P22069 GLU 91 'engineered mutation' 91 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 2 ? HIS A 10 ? ASP A 2 HIS A 10 1 ? 9 HELX_P HELX_P2 2 ASP A 18 ? MET A 23 ? ASP A 18 MET A 23 1 ? 6 HELX_P HELX_P3 3 ARG A 40 ? ALA A 46 ? ARG A 40 ALA A 46 1 ? 7 HELX_P HELX_P4 4 ILE A 47 ? LYS A 49 ? ILE A 47 LYS A 49 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 68 SG ? ? A CYS 19 A CYS 68 1_555 ? ? ? ? ? ? ? 2.068 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 75 SG ? ? A CYS 30 A CYS 75 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf3 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 48 A CYS 90 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf4 disulf ? ? A CYS 87 SG ? ? ? 1_555 A CYS 104 SG ? ? A CYS 87 A CYS 104 1_555 ? ? ? ? ? ? ? 2.051 ? ? covale1 covale both ? A PCA 1 C ? ? ? 1_555 A ASP 2 N ? ? A PCA 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 PCA A 1 ? . . . . PCA A 1 ? 1_555 . . . . . . . GLN 1 PCA 'Pyrrolidone carboxylic acid' 'Named protein modification' 2 CYS A 19 ? CYS A 68 ? CYS A 19 ? 1_555 CYS A 68 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 30 ? CYS A 75 ? CYS A 30 ? 1_555 CYS A 75 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 48 ? CYS A 90 ? CYS A 48 ? 1_555 CYS A 90 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 87 ? CYS A 104 ? CYS A 87 ? 1_555 CYS A 104 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 11 ? THR A 12 ? ILE A 11 THR A 12 A 2 LYS A 33 ? TYR A 38 ? LYS A 33 TYR A 38 A 3 PHE A 63 ? VAL A 70 ? PHE A 63 VAL A 70 A 4 TYR A 77 ? ASN A 84 ? TYR A 77 ASN A 84 B 1 LYS A 55 ? LEU A 58 ? LYS A 55 LEU A 58 B 2 PHE A 86 ? ALA A 91 ? PHE A 86 ALA A 91 B 3 ALA A 94 ? VAL A 101 ? ALA A 94 VAL A 101 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 12 ? N THR A 12 O ILE A 37 ? O ILE A 37 A 2 3 N PHE A 36 ? N PHE A 36 O SER A 66 ? O SER A 66 A 3 4 N LEU A 65 ? N LEU A 65 O SER A 82 ? O SER A 82 B 1 2 N LYS A 55 ? N LYS A 55 O CYS A 90 ? O CYS A 90 B 2 3 N ASN A 89 ? N ASN A 89 O VAL A 96 ? O VAL A 96 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AMP 940 ? 13 'BINDING SITE FOR RESIDUE AMP A 940' AC2 Software A AMP 941 ? 16 'BINDING SITE FOR RESIDUE AMP A 941' AC3 Software A AMP 942 ? 9 'BINDING SITE FOR RESIDUE AMP A 942' AC4 Software A AMP 943 ? 19 'BINDING SITE FOR RESIDUE AMP A 943' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 LYS A 9 ? LYS A 9 . ? 1_555 ? 2 AC1 13 LYS A 31 ? LYS A 31 . ? 1_555 ? 3 AC1 13 ILE A 52 ? ILE A 52 . ? 4_445 ? 4 AC1 13 THR A 60 ? THR A 60 . ? 1_455 ? 5 AC1 13 SER A 61 ? SER A 61 . ? 1_455 ? 6 AC1 13 AMP C . ? AMP A 941 . ? 1_555 ? 7 AC1 13 HOH F . ? HOH A 1015 . ? 1_555 ? 8 AC1 13 HOH F . ? HOH A 1031 . ? 1_555 ? 9 AC1 13 HOH F . ? HOH A 1053 . ? 1_455 ? 10 AC1 13 HOH F . ? HOH A 1058 . ? 1_555 ? 11 AC1 13 HOH F . ? HOH A 1059 . ? 1_555 ? 12 AC1 13 HOH F . ? HOH A 1072 . ? 1_555 ? 13 AC1 13 HOH F . ? HOH A 1128 . ? 1_555 ? 14 AC2 16 LYS A 9 ? LYS A 9 . ? 1_555 ? 15 AC2 16 HIS A 10 ? HIS A 10 . ? 1_555 ? 16 AC2 16 HIS A 97 ? HIS A 97 . ? 1_555 ? 17 AC2 16 PHE A 98 ? PHE A 98 . ? 1_555 ? 18 AC2 16 VAL A 99 ? VAL A 99 . ? 1_555 ? 19 AC2 16 AMP B . ? AMP A 940 . ? 1_555 ? 20 AC2 16 AMP D . ? AMP A 942 . ? 1_555 ? 21 AC2 16 HOH F . ? HOH A 966 . ? 1_555 ? 22 AC2 16 HOH F . ? HOH A 1029 . ? 1_555 ? 23 AC2 16 HOH F . ? HOH A 1047 . ? 1_555 ? 24 AC2 16 HOH F . ? HOH A 1051 . ? 1_555 ? 25 AC2 16 HOH F . ? HOH A 1060 . ? 1_555 ? 26 AC2 16 HOH F . ? HOH A 1072 . ? 1_555 ? 27 AC2 16 HOH F . ? HOH A 1074 . ? 1_555 ? 28 AC2 16 HOH F . ? HOH A 1089 . ? 1_555 ? 29 AC2 16 HOH F . ? HOH A 1099 . ? 1_555 ? 30 AC3 9 ARG A 40 ? ARG A 40 . ? 2_455 ? 31 AC3 9 VAL A 99 ? VAL A 99 . ? 1_555 ? 32 AC3 9 AMP C . ? AMP A 941 . ? 1_555 ? 33 AC3 9 AMP E . ? AMP A 943 . ? 1_555 ? 34 AC3 9 HOH F . ? HOH A 1027 . ? 1_555 ? 35 AC3 9 HOH F . ? HOH A 1030 . ? 1_555 ? 36 AC3 9 HOH F . ? HOH A 1048 . ? 1_555 ? 37 AC3 9 HOH F . ? HOH A 1049 . ? 1_555 ? 38 AC3 9 HOH F . ? HOH A 1126 . ? 1_555 ? 39 AC4 19 ARG A 15 ? ARG A 15 . ? 4_455 ? 40 AC4 19 TYR A 64 ? TYR A 64 . ? 4_455 ? 41 AC4 19 SER A 72 ? SER A 72 . ? 4_555 ? 42 AC4 19 ARG A 73 ? ARG A 73 . ? 4_555 ? 43 AC4 19 PRO A 74 ? PRO A 74 . ? 4_555 ? 44 AC4 19 LYS A 81 ? LYS A 81 . ? 4_455 ? 45 AC4 19 AMP D . ? AMP A 942 . ? 1_555 ? 46 AC4 19 HOH F . ? HOH A 968 . ? 4_555 ? 47 AC4 19 HOH F . ? HOH A 981 . ? 4_455 ? 48 AC4 19 HOH F . ? HOH A 982 . ? 4_555 ? 49 AC4 19 HOH F . ? HOH A 997 . ? 1_555 ? 50 AC4 19 HOH F . ? HOH A 1002 . ? 4_455 ? 51 AC4 19 HOH F . ? HOH A 1007 . ? 1_555 ? 52 AC4 19 HOH F . ? HOH A 1010 . ? 1_555 ? 53 AC4 19 HOH F . ? HOH A 1017 . ? 1_555 ? 54 AC4 19 HOH F . ? HOH A 1046 . ? 1_555 ? 55 AC4 19 HOH F . ? HOH A 1048 . ? 1_555 ? 56 AC4 19 HOH F . ? HOH A 1049 . ? 1_555 ? 57 AC4 19 HOH F . ? HOH A 1086 . ? 1_555 ? # _pdbx_entry_details.entry_id 2GMK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 52 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -95.47 _pdbx_validate_torsion.psi -71.80 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.initial_of_center CESG # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLN _pdbx_struct_mod_residue.details 'PYROGLUTAMIC ACID' # _pdbx_phasing_MR.entry_id 2GMK _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.414 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.565 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 26.550 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 26.550 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AMP P P N N 14 AMP O1P O N N 15 AMP O2P O N N 16 AMP O3P O N N 17 AMP "O5'" O N N 18 AMP "C5'" C N N 19 AMP "C4'" C N R 20 AMP "O4'" O N N 21 AMP "C3'" C N S 22 AMP "O3'" O N N 23 AMP "C2'" C N R 24 AMP "O2'" O N N 25 AMP "C1'" C N R 26 AMP N9 N Y N 27 AMP C8 C Y N 28 AMP N7 N Y N 29 AMP C5 C Y N 30 AMP C6 C Y N 31 AMP N6 N N N 32 AMP N1 N Y N 33 AMP C2 C Y N 34 AMP N3 N Y N 35 AMP C4 C Y N 36 AMP HOP2 H N N 37 AMP HOP3 H N N 38 AMP "H5'1" H N N 39 AMP "H5'2" H N N 40 AMP "H4'" H N N 41 AMP "H3'" H N N 42 AMP "HO3'" H N N 43 AMP "H2'" H N N 44 AMP "HO2'" H N N 45 AMP "H1'" H N N 46 AMP H8 H N N 47 AMP HN61 H N N 48 AMP HN62 H N N 49 AMP H2 H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 GLN N N N N 125 GLN CA C N S 126 GLN C C N N 127 GLN O O N N 128 GLN CB C N N 129 GLN CG C N N 130 GLN CD C N N 131 GLN OE1 O N N 132 GLN NE2 N N N 133 GLN OXT O N N 134 GLN H H N N 135 GLN H2 H N N 136 GLN HA H N N 137 GLN HB2 H N N 138 GLN HB3 H N N 139 GLN HG2 H N N 140 GLN HG3 H N N 141 GLN HE21 H N N 142 GLN HE22 H N N 143 GLN HXT H N N 144 GLU N N N N 145 GLU CA C N S 146 GLU C C N N 147 GLU O O N N 148 GLU CB C N N 149 GLU CG C N N 150 GLU CD C N N 151 GLU OE1 O N N 152 GLU OE2 O N N 153 GLU OXT O N N 154 GLU H H N N 155 GLU H2 H N N 156 GLU HA H N N 157 GLU HB2 H N N 158 GLU HB3 H N N 159 GLU HG2 H N N 160 GLU HG3 H N N 161 GLU HE2 H N N 162 GLU HXT H N N 163 GLY N N N N 164 GLY CA C N N 165 GLY C C N N 166 GLY O O N N 167 GLY OXT O N N 168 GLY H H N N 169 GLY H2 H N N 170 GLY HA2 H N N 171 GLY HA3 H N N 172 GLY HXT H N N 173 HIS N N N N 174 HIS CA C N S 175 HIS C C N N 176 HIS O O N N 177 HIS CB C N N 178 HIS CG C Y N 179 HIS ND1 N Y N 180 HIS CD2 C Y N 181 HIS CE1 C Y N 182 HIS NE2 N Y N 183 HIS OXT O N N 184 HIS H H N N 185 HIS H2 H N N 186 HIS HA H N N 187 HIS HB2 H N N 188 HIS HB3 H N N 189 HIS HD1 H N N 190 HIS HD2 H N N 191 HIS HE1 H N N 192 HIS HE2 H N N 193 HIS HXT H N N 194 HOH O O N N 195 HOH H1 H N N 196 HOH H2 H N N 197 ILE N N N N 198 ILE CA C N S 199 ILE C C N N 200 ILE O O N N 201 ILE CB C N S 202 ILE CG1 C N N 203 ILE CG2 C N N 204 ILE CD1 C N N 205 ILE OXT O N N 206 ILE H H N N 207 ILE H2 H N N 208 ILE HA H N N 209 ILE HB H N N 210 ILE HG12 H N N 211 ILE HG13 H N N 212 ILE HG21 H N N 213 ILE HG22 H N N 214 ILE HG23 H N N 215 ILE HD11 H N N 216 ILE HD12 H N N 217 ILE HD13 H N N 218 ILE HXT H N N 219 LEU N N N N 220 LEU CA C N S 221 LEU C C N N 222 LEU O O N N 223 LEU CB C N N 224 LEU CG C N N 225 LEU CD1 C N N 226 LEU CD2 C N N 227 LEU OXT O N N 228 LEU H H N N 229 LEU H2 H N N 230 LEU HA H N N 231 LEU HB2 H N N 232 LEU HB3 H N N 233 LEU HG H N N 234 LEU HD11 H N N 235 LEU HD12 H N N 236 LEU HD13 H N N 237 LEU HD21 H N N 238 LEU HD22 H N N 239 LEU HD23 H N N 240 LEU HXT H N N 241 LYS N N N N 242 LYS CA C N S 243 LYS C C N N 244 LYS O O N N 245 LYS CB C N N 246 LYS CG C N N 247 LYS CD C N N 248 LYS CE C N N 249 LYS NZ N N N 250 LYS OXT O N N 251 LYS H H N N 252 LYS H2 H N N 253 LYS HA H N N 254 LYS HB2 H N N 255 LYS HB3 H N N 256 LYS HG2 H N N 257 LYS HG3 H N N 258 LYS HD2 H N N 259 LYS HD3 H N N 260 LYS HE2 H N N 261 LYS HE3 H N N 262 LYS HZ1 H N N 263 LYS HZ2 H N N 264 LYS HZ3 H N N 265 LYS HXT H N N 266 MET N N N N 267 MET CA C N S 268 MET C C N N 269 MET O O N N 270 MET CB C N N 271 MET CG C N N 272 MET SD S N N 273 MET CE C N N 274 MET OXT O N N 275 MET H H N N 276 MET H2 H N N 277 MET HA H N N 278 MET HB2 H N N 279 MET HB3 H N N 280 MET HG2 H N N 281 MET HG3 H N N 282 MET HE1 H N N 283 MET HE2 H N N 284 MET HE3 H N N 285 MET HXT H N N 286 PCA N N N N 287 PCA CA C N S 288 PCA CB C N N 289 PCA CG C N N 290 PCA CD C N N 291 PCA OE O N N 292 PCA C C N N 293 PCA O O N N 294 PCA OXT O N N 295 PCA H H N N 296 PCA HA H N N 297 PCA HB2 H N N 298 PCA HB3 H N N 299 PCA HG2 H N N 300 PCA HG3 H N N 301 PCA HXT H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TRP N N N N 374 TRP CA C N S 375 TRP C C N N 376 TRP O O N N 377 TRP CB C N N 378 TRP CG C Y N 379 TRP CD1 C Y N 380 TRP CD2 C Y N 381 TRP NE1 N Y N 382 TRP CE2 C Y N 383 TRP CE3 C Y N 384 TRP CZ2 C Y N 385 TRP CZ3 C Y N 386 TRP CH2 C Y N 387 TRP OXT O N N 388 TRP H H N N 389 TRP H2 H N N 390 TRP HA H N N 391 TRP HB2 H N N 392 TRP HB3 H N N 393 TRP HD1 H N N 394 TRP HE1 H N N 395 TRP HE3 H N N 396 TRP HZ2 H N N 397 TRP HZ3 H N N 398 TRP HH2 H N N 399 TRP HXT H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 VAL N N N N 425 VAL CA C N S 426 VAL C C N N 427 VAL O O N N 428 VAL CB C N N 429 VAL CG1 C N N 430 VAL CG2 C N N 431 VAL OXT O N N 432 VAL H H N N 433 VAL H2 H N N 434 VAL HA H N N 435 VAL HB H N N 436 VAL HG11 H N N 437 VAL HG12 H N N 438 VAL HG13 H N N 439 VAL HG21 H N N 440 VAL HG22 H N N 441 VAL HG23 H N N 442 VAL HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AMP P O1P doub N N 13 AMP P O2P sing N N 14 AMP P O3P sing N N 15 AMP P "O5'" sing N N 16 AMP O2P HOP2 sing N N 17 AMP O3P HOP3 sing N N 18 AMP "O5'" "C5'" sing N N 19 AMP "C5'" "C4'" sing N N 20 AMP "C5'" "H5'1" sing N N 21 AMP "C5'" "H5'2" sing N N 22 AMP "C4'" "O4'" sing N N 23 AMP "C4'" "C3'" sing N N 24 AMP "C4'" "H4'" sing N N 25 AMP "O4'" "C1'" sing N N 26 AMP "C3'" "O3'" sing N N 27 AMP "C3'" "C2'" sing N N 28 AMP "C3'" "H3'" sing N N 29 AMP "O3'" "HO3'" sing N N 30 AMP "C2'" "O2'" sing N N 31 AMP "C2'" "C1'" sing N N 32 AMP "C2'" "H2'" sing N N 33 AMP "O2'" "HO2'" sing N N 34 AMP "C1'" N9 sing N N 35 AMP "C1'" "H1'" sing N N 36 AMP N9 C8 sing Y N 37 AMP N9 C4 sing Y N 38 AMP C8 N7 doub Y N 39 AMP C8 H8 sing N N 40 AMP N7 C5 sing Y N 41 AMP C5 C6 sing Y N 42 AMP C5 C4 doub Y N 43 AMP C6 N6 sing N N 44 AMP C6 N1 doub Y N 45 AMP N6 HN61 sing N N 46 AMP N6 HN62 sing N N 47 AMP N1 C2 sing Y N 48 AMP C2 N3 doub Y N 49 AMP C2 H2 sing N N 50 AMP N3 C4 sing Y N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 GLN N CA sing N N 122 GLN N H sing N N 123 GLN N H2 sing N N 124 GLN CA C sing N N 125 GLN CA CB sing N N 126 GLN CA HA sing N N 127 GLN C O doub N N 128 GLN C OXT sing N N 129 GLN CB CG sing N N 130 GLN CB HB2 sing N N 131 GLN CB HB3 sing N N 132 GLN CG CD sing N N 133 GLN CG HG2 sing N N 134 GLN CG HG3 sing N N 135 GLN CD OE1 doub N N 136 GLN CD NE2 sing N N 137 GLN NE2 HE21 sing N N 138 GLN NE2 HE22 sing N N 139 GLN OXT HXT sing N N 140 GLU N CA sing N N 141 GLU N H sing N N 142 GLU N H2 sing N N 143 GLU CA C sing N N 144 GLU CA CB sing N N 145 GLU CA HA sing N N 146 GLU C O doub N N 147 GLU C OXT sing N N 148 GLU CB CG sing N N 149 GLU CB HB2 sing N N 150 GLU CB HB3 sing N N 151 GLU CG CD sing N N 152 GLU CG HG2 sing N N 153 GLU CG HG3 sing N N 154 GLU CD OE1 doub N N 155 GLU CD OE2 sing N N 156 GLU OE2 HE2 sing N N 157 GLU OXT HXT sing N N 158 GLY N CA sing N N 159 GLY N H sing N N 160 GLY N H2 sing N N 161 GLY CA C sing N N 162 GLY CA HA2 sing N N 163 GLY CA HA3 sing N N 164 GLY C O doub N N 165 GLY C OXT sing N N 166 GLY OXT HXT sing N N 167 HIS N CA sing N N 168 HIS N H sing N N 169 HIS N H2 sing N N 170 HIS CA C sing N N 171 HIS CA CB sing N N 172 HIS CA HA sing N N 173 HIS C O doub N N 174 HIS C OXT sing N N 175 HIS CB CG sing N N 176 HIS CB HB2 sing N N 177 HIS CB HB3 sing N N 178 HIS CG ND1 sing Y N 179 HIS CG CD2 doub Y N 180 HIS ND1 CE1 doub Y N 181 HIS ND1 HD1 sing N N 182 HIS CD2 NE2 sing Y N 183 HIS CD2 HD2 sing N N 184 HIS CE1 NE2 sing Y N 185 HIS CE1 HE1 sing N N 186 HIS NE2 HE2 sing N N 187 HIS OXT HXT sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 ILE N CA sing N N 191 ILE N H sing N N 192 ILE N H2 sing N N 193 ILE CA C sing N N 194 ILE CA CB sing N N 195 ILE CA HA sing N N 196 ILE C O doub N N 197 ILE C OXT sing N N 198 ILE CB CG1 sing N N 199 ILE CB CG2 sing N N 200 ILE CB HB sing N N 201 ILE CG1 CD1 sing N N 202 ILE CG1 HG12 sing N N 203 ILE CG1 HG13 sing N N 204 ILE CG2 HG21 sing N N 205 ILE CG2 HG22 sing N N 206 ILE CG2 HG23 sing N N 207 ILE CD1 HD11 sing N N 208 ILE CD1 HD12 sing N N 209 ILE CD1 HD13 sing N N 210 ILE OXT HXT sing N N 211 LEU N CA sing N N 212 LEU N H sing N N 213 LEU N H2 sing N N 214 LEU CA C sing N N 215 LEU CA CB sing N N 216 LEU CA HA sing N N 217 LEU C O doub N N 218 LEU C OXT sing N N 219 LEU CB CG sing N N 220 LEU CB HB2 sing N N 221 LEU CB HB3 sing N N 222 LEU CG CD1 sing N N 223 LEU CG CD2 sing N N 224 LEU CG HG sing N N 225 LEU CD1 HD11 sing N N 226 LEU CD1 HD12 sing N N 227 LEU CD1 HD13 sing N N 228 LEU CD2 HD21 sing N N 229 LEU CD2 HD22 sing N N 230 LEU CD2 HD23 sing N N 231 LEU OXT HXT sing N N 232 LYS N CA sing N N 233 LYS N H sing N N 234 LYS N H2 sing N N 235 LYS CA C sing N N 236 LYS CA CB sing N N 237 LYS CA HA sing N N 238 LYS C O doub N N 239 LYS C OXT sing N N 240 LYS CB CG sing N N 241 LYS CB HB2 sing N N 242 LYS CB HB3 sing N N 243 LYS CG CD sing N N 244 LYS CG HG2 sing N N 245 LYS CG HG3 sing N N 246 LYS CD CE sing N N 247 LYS CD HD2 sing N N 248 LYS CD HD3 sing N N 249 LYS CE NZ sing N N 250 LYS CE HE2 sing N N 251 LYS CE HE3 sing N N 252 LYS NZ HZ1 sing N N 253 LYS NZ HZ2 sing N N 254 LYS NZ HZ3 sing N N 255 LYS OXT HXT sing N N 256 MET N CA sing N N 257 MET N H sing N N 258 MET N H2 sing N N 259 MET CA C sing N N 260 MET CA CB sing N N 261 MET CA HA sing N N 262 MET C O doub N N 263 MET C OXT sing N N 264 MET CB CG sing N N 265 MET CB HB2 sing N N 266 MET CB HB3 sing N N 267 MET CG SD sing N N 268 MET CG HG2 sing N N 269 MET CG HG3 sing N N 270 MET SD CE sing N N 271 MET CE HE1 sing N N 272 MET CE HE2 sing N N 273 MET CE HE3 sing N N 274 MET OXT HXT sing N N 275 PCA N CA sing N N 276 PCA N CD sing N N 277 PCA N H sing N N 278 PCA CA CB sing N N 279 PCA CA C sing N N 280 PCA CA HA sing N N 281 PCA CB CG sing N N 282 PCA CB HB2 sing N N 283 PCA CB HB3 sing N N 284 PCA CG CD sing N N 285 PCA CG HG2 sing N N 286 PCA CG HG3 sing N N 287 PCA CD OE doub N N 288 PCA C O doub N N 289 PCA C OXT sing N N 290 PCA OXT HXT sing N N 291 PHE N CA sing N N 292 PHE N H sing N N 293 PHE N H2 sing N N 294 PHE CA C sing N N 295 PHE CA CB sing N N 296 PHE CA HA sing N N 297 PHE C O doub N N 298 PHE C OXT sing N N 299 PHE CB CG sing N N 300 PHE CB HB2 sing N N 301 PHE CB HB3 sing N N 302 PHE CG CD1 doub Y N 303 PHE CG CD2 sing Y N 304 PHE CD1 CE1 sing Y N 305 PHE CD1 HD1 sing N N 306 PHE CD2 CE2 doub Y N 307 PHE CD2 HD2 sing N N 308 PHE CE1 CZ doub Y N 309 PHE CE1 HE1 sing N N 310 PHE CE2 CZ sing Y N 311 PHE CE2 HE2 sing N N 312 PHE CZ HZ sing N N 313 PHE OXT HXT sing N N 314 PRO N CA sing N N 315 PRO N CD sing N N 316 PRO N H sing N N 317 PRO CA C sing N N 318 PRO CA CB sing N N 319 PRO CA HA sing N N 320 PRO C O doub N N 321 PRO C OXT sing N N 322 PRO CB CG sing N N 323 PRO CB HB2 sing N N 324 PRO CB HB3 sing N N 325 PRO CG CD sing N N 326 PRO CG HG2 sing N N 327 PRO CG HG3 sing N N 328 PRO CD HD2 sing N N 329 PRO CD HD3 sing N N 330 PRO OXT HXT sing N N 331 SER N CA sing N N 332 SER N H sing N N 333 SER N H2 sing N N 334 SER CA C sing N N 335 SER CA CB sing N N 336 SER CA HA sing N N 337 SER C O doub N N 338 SER C OXT sing N N 339 SER CB OG sing N N 340 SER CB HB2 sing N N 341 SER CB HB3 sing N N 342 SER OG HG sing N N 343 SER OXT HXT sing N N 344 THR N CA sing N N 345 THR N H sing N N 346 THR N H2 sing N N 347 THR CA C sing N N 348 THR CA CB sing N N 349 THR CA HA sing N N 350 THR C O doub N N 351 THR C OXT sing N N 352 THR CB OG1 sing N N 353 THR CB CG2 sing N N 354 THR CB HB sing N N 355 THR OG1 HG1 sing N N 356 THR CG2 HG21 sing N N 357 THR CG2 HG22 sing N N 358 THR CG2 HG23 sing N N 359 THR OXT HXT sing N N 360 TRP N CA sing N N 361 TRP N H sing N N 362 TRP N H2 sing N N 363 TRP CA C sing N N 364 TRP CA CB sing N N 365 TRP CA HA sing N N 366 TRP C O doub N N 367 TRP C OXT sing N N 368 TRP CB CG sing N N 369 TRP CB HB2 sing N N 370 TRP CB HB3 sing N N 371 TRP CG CD1 doub Y N 372 TRP CG CD2 sing Y N 373 TRP CD1 NE1 sing Y N 374 TRP CD1 HD1 sing N N 375 TRP CD2 CE2 doub Y N 376 TRP CD2 CE3 sing Y N 377 TRP NE1 CE2 sing Y N 378 TRP NE1 HE1 sing N N 379 TRP CE2 CZ2 sing Y N 380 TRP CE3 CZ3 doub Y N 381 TRP CE3 HE3 sing N N 382 TRP CZ2 CH2 doub Y N 383 TRP CZ2 HZ2 sing N N 384 TRP CZ3 CH2 sing Y N 385 TRP CZ3 HZ3 sing N N 386 TRP CH2 HH2 sing N N 387 TRP OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 VAL N CA sing N N 413 VAL N H sing N N 414 VAL N H2 sing N N 415 VAL CA C sing N N 416 VAL CA CB sing N N 417 VAL CA HA sing N N 418 VAL C O doub N N 419 VAL C OXT sing N N 420 VAL CB CG1 sing N N 421 VAL CB CG2 sing N N 422 VAL CB HB sing N N 423 VAL CG1 HG11 sing N N 424 VAL CG1 HG12 sing N N 425 VAL CG1 HG13 sing N N 426 VAL CG2 HG21 sing N N 427 VAL CG2 HG22 sing N N 428 VAL CG2 HG23 sing N N 429 VAL OXT HXT sing N N 430 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ONC _pdbx_initial_refinement_model.details 'pdb entry 1onc' # _atom_sites.entry_id 2GMK _atom_sites.fract_transf_matrix[1][1] 0.03449 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01919 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01512 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_