HEADER ISOMERASE 06-APR-06 2GML TITLE CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF E.COLI RLUF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE F; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES (-11)-225; COMPND 5 SYNONYM: RRNA-URIDINE ISOMERASE F, RRNA PSEUDOURIDYLATE COMPND 6 SYNTHASE F; COMPND 7 EC: 5.4.99.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PF04 KEYWDS PSEUDOURIDINE SYNTHASE, CRYSTAL STRUCTURE, RLUF, RIBOSOME, KEYWDS 2 RNA MODIFYING ENZYME, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SUNITA,H.ZHENXING,J.SWAATHI,M.CYGLER,A.MATTE,J.SIVARAMAN REVDAT 2 24-FEB-09 2GML 1 VERSN REVDAT 1 18-JUL-06 2GML 0 JRNL AUTH S.SUNITA,H.ZHENXING,J.SWAATHI,M.CYGLER,A.MATTE, JRNL AUTH 2 J.SIVARAMAN JRNL TITL DOMAIN ORGANIZATION AND CRYSTAL STRUCTURE OF THE JRNL TITL 2 CATALYTIC DOMAIN OF E.COLI RLUF, A PSEUDOURIDINE JRNL TITL 3 SYNTHASE THAT ACTS ON 23S RRNA JRNL REF J.MOL.BIOL. V. 359 998 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16712869 JRNL DOI 10.1016/J.JMB.2006.04.019 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2140 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GML COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792, 0.9794 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.2M POTASSIUM REMARK 280 THIOCYANATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.95700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.85700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.85700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.93550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.85700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.85700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.97850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.85700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.85700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.93550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.85700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.85700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.97850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.95700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 176 REMARK 465 GLU A 177 REMARK 465 VAL A 178 REMARK 465 LYS A 179 REMARK 465 PRO A 180 REMARK 465 LYS A 181 REMARK 465 ALA A 182 REMARK 465 LYS A 183 REMARK 465 ALA A 184 REMARK 465 LYS A 185 REMARK 465 PRO A 186 REMARK 465 LYS A 187 REMARK 465 THR A 188 REMARK 465 ALA A 189 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 465 LYS A 192 REMARK 465 ARG A 193 REMARK 465 PRO A 194 REMARK 465 VAL A 195 REMARK 465 VAL A 196 REMARK 465 LYS A 197 REMARK 465 MSE A 198 REMARK 465 GLU A 199 REMARK 465 LYS A 200 REMARK 465 THR A 201 REMARK 465 ALA A 202 REMARK 465 GLU A 203 REMARK 465 LYS A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 465 ARG A 207 REMARK 465 PRO A 208 REMARK 465 ALA A 209 REMARK 465 SER A 210 REMARK 465 ASN A 211 REMARK 465 GLY A 212 REMARK 465 LYS A 213 REMARK 465 ARG A 214 REMARK 465 PHE A 215 REMARK 465 THR A 216 REMARK 465 SER A 217 REMARK 465 PRO A 218 REMARK 465 GLY A 219 REMARK 465 ARG A 220 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 LYS A 223 REMARK 465 GLY A 224 REMARK 465 ARG A 225 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 SER B 176 REMARK 465 GLU B 177 REMARK 465 VAL B 178 REMARK 465 LYS B 179 REMARK 465 PRO B 180 REMARK 465 LYS B 181 REMARK 465 ALA B 182 REMARK 465 LYS B 183 REMARK 465 ALA B 184 REMARK 465 LYS B 185 REMARK 465 PRO B 186 REMARK 465 LYS B 187 REMARK 465 THR B 188 REMARK 465 ALA B 189 REMARK 465 GLY B 190 REMARK 465 ILE B 191 REMARK 465 LYS B 192 REMARK 465 ARG B 193 REMARK 465 PRO B 194 REMARK 465 VAL B 195 REMARK 465 VAL B 196 REMARK 465 LYS B 197 REMARK 465 MSE B 198 REMARK 465 GLU B 199 REMARK 465 LYS B 200 REMARK 465 THR B 201 REMARK 465 ALA B 202 REMARK 465 GLU B 203 REMARK 465 LYS B 204 REMARK 465 GLY B 205 REMARK 465 GLY B 206 REMARK 465 ARG B 207 REMARK 465 PRO B 208 REMARK 465 ALA B 209 REMARK 465 SER B 210 REMARK 465 ASN B 211 REMARK 465 GLY B 212 REMARK 465 LYS B 213 REMARK 465 ARG B 214 REMARK 465 PHE B 215 REMARK 465 THR B 216 REMARK 465 SER B 217 REMARK 465 PRO B 218 REMARK 465 GLY B 219 REMARK 465 ARG B 220 REMARK 465 LYS B 221 REMARK 465 LYS B 222 REMARK 465 LYS B 223 REMARK 465 GLY B 224 REMARK 465 ARG B 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ASP A 19 CB CG OD1 OD2 REMARK 470 GLU A 21 CB CG CD OE1 OE2 REMARK 470 ARG A 22 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 ILE A 85 CG1 CG2 CD1 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 SER A 89 CB OG REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ASN A 173 CG OD1 ND2 REMARK 470 SER A 174 OG REMARK 470 SER A 175 OG REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ASP B 19 CB CG OD1 OD2 REMARK 470 GLU B 21 CB CG CD OE1 OE2 REMARK 470 ARG B 22 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 ILE B 85 CG1 CG2 CD1 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 SER B 89 CB OG REMARK 470 THR B 99 CB OG1 CG2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 ASN B 173 CG OD1 ND2 REMARK 470 SER B 174 OG REMARK 470 SER B 175 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 57.47 -154.16 REMARK 500 GLU A 18 -162.90 -169.27 REMARK 500 ASP A 19 -132.50 56.77 REMARK 500 GLU A 21 -89.70 94.98 REMARK 500 ARG A 22 -97.37 75.25 REMARK 500 ASN A 30 82.43 -66.09 REMARK 500 LYS A 137 131.51 -173.38 REMARK 500 SER A 174 118.91 -163.75 REMARK 500 THR B 17 55.29 -119.89 REMARK 500 GLU B 18 -157.03 -156.15 REMARK 500 ASP B 19 -119.40 43.15 REMARK 500 GLU B 21 -80.31 40.57 REMARK 500 ARG B 22 -109.66 71.08 REMARK 500 ASP B 23 62.88 -118.34 REMARK 500 ASN B 30 78.36 13.49 REMARK 500 ASP B 42 156.55 -38.05 REMARK 500 PRO B 93 86.21 -62.32 REMARK 500 LEU B 95 62.99 32.14 REMARK 500 VAL B 98 31.92 -76.64 REMARK 500 THR B 99 139.98 64.40 REMARK 500 LYS B 100 -133.19 -76.74 REMARK 500 ARG B 122 5.82 57.88 REMARK 500 SER B 149 108.01 -36.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 272 DISTANCE = 6.12 ANGSTROMS DBREF 2GML A 1 225 UNP P32684 RLUF_ECOLI 66 290 DBREF 2GML B 1 225 UNP P32684 RLUF_ECOLI 66 290 SEQADV 2GML MET A -11 UNP P32684 EXPRESSION TAG SEQADV 2GML GLY A -10 UNP P32684 EXPRESSION TAG SEQADV 2GML SER A -9 UNP P32684 EXPRESSION TAG SEQADV 2GML SER A -8 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS A -7 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS A -6 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS A -5 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS A -4 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS A -3 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS A -2 UNP P32684 EXPRESSION TAG SEQADV 2GML GLY A -1 UNP P32684 EXPRESSION TAG SEQADV 2GML SER A 0 UNP P32684 EXPRESSION TAG SEQADV 2GML MSE A 88 UNP P32684 MET 153 MODIFIED RESIDUE SEQADV 2GML MSE A 127 UNP P32684 MET 192 MODIFIED RESIDUE SEQADV 2GML MSE A 144 UNP P32684 MET 209 MODIFIED RESIDUE SEQADV 2GML MSE A 198 UNP P32684 MET 263 MODIFIED RESIDUE SEQADV 2GML MET B -11 UNP P32684 EXPRESSION TAG SEQADV 2GML GLY B -10 UNP P32684 EXPRESSION TAG SEQADV 2GML SER B -9 UNP P32684 EXPRESSION TAG SEQADV 2GML SER B -8 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS B -7 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS B -6 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS B -5 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS B -4 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS B -3 UNP P32684 EXPRESSION TAG SEQADV 2GML HIS B -2 UNP P32684 EXPRESSION TAG SEQADV 2GML GLY B -1 UNP P32684 EXPRESSION TAG SEQADV 2GML SER B 0 UNP P32684 EXPRESSION TAG SEQADV 2GML MSE B 88 UNP P32684 MET 153 MODIFIED RESIDUE SEQADV 2GML MSE B 127 UNP P32684 MET 192 MODIFIED RESIDUE SEQADV 2GML MSE B 144 UNP P32684 MET 209 MODIFIED RESIDUE SEQADV 2GML MSE B 198 UNP P32684 MET 263 MODIFIED RESIDUE SEQRES 1 A 237 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 A 237 LEU VAL LEU ILE ALA LEU ASN LYS PRO VAL GLY ILE VAL SEQRES 3 A 237 SER THR THR GLU ASP GLY GLU ARG ASP ASN ILE VAL ASP SEQRES 4 A 237 PHE VAL ASN HIS SER LYS ARG VAL PHE PRO ILE GLY ARG SEQRES 5 A 237 LEU ASP LYS ASP SER GLN GLY LEU ILE PHE LEU THR ASN SEQRES 6 A 237 HIS GLY ASP LEU VAL ASN LYS ILE LEU ARG ALA GLY ASN SEQRES 7 A 237 ASP HIS GLU LYS GLU TYR LEU VAL THR VAL ASP LYS PRO SEQRES 8 A 237 ILE THR GLU GLU PHE ILE ARG GLY MSE SER ALA GLY VAL SEQRES 9 A 237 PRO ILE LEU GLY THR VAL THR LYS LYS CYS LYS VAL LYS SEQRES 10 A 237 LYS GLU ALA PRO PHE VAL PHE ARG ILE THR LEU VAL GLN SEQRES 11 A 237 GLY LEU ASN ARG GLN ILE ARG ARG MSE CYS GLU HIS PHE SEQRES 12 A 237 GLY TYR GLU VAL LYS LYS LEU GLU ARG THR ARG ILE MSE SEQRES 13 A 237 ASN VAL SER LEU SER GLY ILE PRO LEU GLY GLU TRP ARG SEQRES 14 A 237 ASP LEU THR ASP ASP GLU LEU ILE ASP LEU PHE LYS LEU SEQRES 15 A 237 ILE GLU ASN SER SER SER GLU VAL LYS PRO LYS ALA LYS SEQRES 16 A 237 ALA LYS PRO LYS THR ALA GLY ILE LYS ARG PRO VAL VAL SEQRES 17 A 237 LYS MSE GLU LYS THR ALA GLU LYS GLY GLY ARG PRO ALA SEQRES 18 A 237 SER ASN GLY LYS ARG PHE THR SER PRO GLY ARG LYS LYS SEQRES 19 A 237 LYS GLY ARG SEQRES 1 B 237 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 B 237 LEU VAL LEU ILE ALA LEU ASN LYS PRO VAL GLY ILE VAL SEQRES 3 B 237 SER THR THR GLU ASP GLY GLU ARG ASP ASN ILE VAL ASP SEQRES 4 B 237 PHE VAL ASN HIS SER LYS ARG VAL PHE PRO ILE GLY ARG SEQRES 5 B 237 LEU ASP LYS ASP SER GLN GLY LEU ILE PHE LEU THR ASN SEQRES 6 B 237 HIS GLY ASP LEU VAL ASN LYS ILE LEU ARG ALA GLY ASN SEQRES 7 B 237 ASP HIS GLU LYS GLU TYR LEU VAL THR VAL ASP LYS PRO SEQRES 8 B 237 ILE THR GLU GLU PHE ILE ARG GLY MSE SER ALA GLY VAL SEQRES 9 B 237 PRO ILE LEU GLY THR VAL THR LYS LYS CYS LYS VAL LYS SEQRES 10 B 237 LYS GLU ALA PRO PHE VAL PHE ARG ILE THR LEU VAL GLN SEQRES 11 B 237 GLY LEU ASN ARG GLN ILE ARG ARG MSE CYS GLU HIS PHE SEQRES 12 B 237 GLY TYR GLU VAL LYS LYS LEU GLU ARG THR ARG ILE MSE SEQRES 13 B 237 ASN VAL SER LEU SER GLY ILE PRO LEU GLY GLU TRP ARG SEQRES 14 B 237 ASP LEU THR ASP ASP GLU LEU ILE ASP LEU PHE LYS LEU SEQRES 15 B 237 ILE GLU ASN SER SER SER GLU VAL LYS PRO LYS ALA LYS SEQRES 16 B 237 ALA LYS PRO LYS THR ALA GLY ILE LYS ARG PRO VAL VAL SEQRES 17 B 237 LYS MSE GLU LYS THR ALA GLU LYS GLY GLY ARG PRO ALA SEQRES 18 B 237 SER ASN GLY LYS ARG PHE THR SER PRO GLY ARG LYS LYS SEQRES 19 B 237 LYS GLY ARG MODRES 2GML MSE A 88 MET SELENOMETHIONINE MODRES 2GML MSE A 127 MET SELENOMETHIONINE MODRES 2GML MSE A 144 MET SELENOMETHIONINE MODRES 2GML MSE B 88 MET SELENOMETHIONINE MODRES 2GML MSE B 127 MET SELENOMETHIONINE MODRES 2GML MSE B 144 MET SELENOMETHIONINE HET MSE A 88 8 HET MSE A 127 8 HET MSE A 144 8 HET MSE B 88 8 HET MSE B 127 8 HET MSE B 144 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HOH *125(H2 O) HELIX 1 1 ASN A 24 VAL A 29 1 6 HELIX 2 2 HIS A 54 HIS A 68 1 15 HELIX 3 3 THR A 81 SER A 89 1 9 HELIX 4 4 ARG A 122 PHE A 131 1 10 HELIX 5 5 THR A 160 LYS A 169 1 10 HELIX 6 6 ASN B 24 VAL B 29 1 6 HELIX 7 7 HIS B 54 ASN B 66 1 13 HELIX 8 8 THR B 81 SER B 89 1 9 HELIX 9 9 ARG B 122 HIS B 130 1 9 HELIX 10 10 THR B 160 LYS B 169 1 10 SHEET 1 A 4 PHE A 36 ILE A 38 0 SHEET 2 A 4 GLN A 46 THR A 52 -1 O THR A 52 N PHE A 36 SHEET 3 A 4 VAL A 135 ILE A 143 1 O ARG A 140 N GLN A 46 SHEET 4 A 4 VAL A 146 SER A 147 -1 O VAL A 146 N ILE A 143 SHEET 1 B 7 LYS A 103 ALA A 108 0 SHEET 2 B 7 VAL A 111 LEU A 116 -1 O ARG A 113 N LYS A 105 SHEET 3 B 7 LYS A 70 VAL A 76 -1 N VAL A 74 O PHE A 112 SHEET 4 B 7 VAL A 135 ILE A 143 -1 O LYS A 136 N THR A 75 SHEET 5 B 7 GLN A 46 THR A 52 1 N GLN A 46 O ARG A 140 SHEET 6 B 7 LEU A 4 LYS A 9 -1 N ILE A 5 O LEU A 51 SHEET 7 B 7 TRP A 156 ASP A 158 -1 O ARG A 157 N ALA A 6 SHEET 1 C 2 PRO A 93 ILE A 94 0 SHEET 2 C 2 THR A 97 VAL A 98 -1 O THR A 97 N ILE A 94 SHEET 1 D 4 PHE B 36 PRO B 37 0 SHEET 2 D 4 GLN B 46 THR B 52 -1 O THR B 52 N PHE B 36 SHEET 3 D 4 VAL B 135 ILE B 143 1 O ARG B 140 N GLN B 46 SHEET 4 D 4 VAL B 146 SER B 147 -1 O VAL B 146 N ILE B 143 SHEET 1 E 7 LYS B 103 ALA B 108 0 SHEET 2 E 7 VAL B 111 LEU B 116 -1 O VAL B 111 N GLU B 107 SHEET 3 E 7 LYS B 70 VAL B 76 -1 N TYR B 72 O ILE B 114 SHEET 4 E 7 VAL B 135 ILE B 143 -1 O LYS B 136 N THR B 75 SHEET 5 E 7 GLN B 46 THR B 52 1 N GLN B 46 O ARG B 140 SHEET 6 E 7 LEU B 4 LYS B 9 -1 N ILE B 5 O LEU B 51 SHEET 7 E 7 TRP B 156 ASP B 158 -1 O ARG B 157 N ALA B 6 LINK C GLY A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N SER A 89 1555 1555 1.33 LINK C ARG A 126 N MSE A 127 1555 1555 1.32 LINK C MSE A 127 N CYS A 128 1555 1555 1.32 LINK C ILE A 143 N MSE A 144 1555 1555 1.32 LINK C MSE A 144 N ASN A 145 1555 1555 1.32 LINK C GLY B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N SER B 89 1555 1555 1.33 LINK C ARG B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N CYS B 128 1555 1555 1.33 LINK C ILE B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N ASN B 145 1555 1555 1.33 CRYST1 65.714 65.714 215.914 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004631 0.00000