HEADER HYDROLASE 07-APR-06 2GMN TITLE CRYSTAL STRUCTURE OF BJP-1, A SUBCLASS B3 METALLO-BETA-LACTAMASE OF TITLE 2 BRADYRHIZOBIUM JAPONICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 21-294; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM JAPONICUM; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: USDA 110; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CALDERONE,M.BENVENUTI,M.STOCZKO,J.D.DOCQUIER,G.M.ROSSOLINI, AUTHOR 2 S.MANGANI REVDAT 5 18-OCT-17 2GMN 1 REMARK REVDAT 4 13-JUL-11 2GMN 1 VERSN REVDAT 3 24-FEB-09 2GMN 1 VERSN REVDAT 2 21-AUG-07 2GMN 1 JRNL REVDAT 1 24-APR-07 2GMN 0 JRNL AUTH M.STOCZKO,J.M.FRERE,G.M.ROSSOLINI,J.D.DOCQUIER JRNL TITL POSTGENOMIC SCAN OF METALLO-BETA-LACTAMASE HOMOLOGUES IN JRNL TITL 2 RHIZOBACTERIA: IDENTIFICATION AND CHARACTERIZATION OF BJP-1, JRNL TITL 3 A SUBCLASS B3 ORTHOLOG FROM BRADYRHIZOBIUM JAPONICUM. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 50 1973 2006 JRNL REFN ISSN 0066-4804 JRNL PMID 16723554 JRNL DOI 10.1128/AAC.01551-05 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 8006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 434 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 713 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.05000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4124 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5586 ; 1.163 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;32.946 ;25.119 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;12.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.595 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3082 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2006 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2862 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 578 ; 0.109 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.046 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2680 ; 0.823 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4206 ; 1.274 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1611 ; 1.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1380 ; 2.681 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4291 ; 1.073 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 719 ; 2.972 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4038 ; 2.912 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.281302 REMARK 200 MONOCHROMATOR : SI(311) AND SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.576 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.4M NA ACETATE, 40% REMARK 280 PEG4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 21 REMARK 465 THR A 22 REMARK 465 ILE A 23 REMARK 465 LYS A 24 REMARK 465 ASP A 25 REMARK 465 PHE A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 LYS A 293 REMARK 465 LYS A 294 REMARK 465 GLN B 21 REMARK 465 THR B 22 REMARK 465 ILE B 23 REMARK 465 LYS B 24 REMARK 465 ASP B 25 REMARK 465 PHE B 26 REMARK 465 LEU B 27 REMARK 465 ALA B 28 REMARK 465 LYS B 293 REMARK 465 LYS B 294 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 -101.20 -117.81 REMARK 500 ASP A 45 -119.97 53.90 REMARK 500 ASP A 70 172.36 67.77 REMARK 500 THR A 71 -156.51 -131.26 REMARK 500 ALA A 72 -154.51 -127.68 REMARK 500 ASP A 139 49.91 -148.95 REMARK 500 SER A 202 137.39 116.64 REMARK 500 ALA A 206 -120.73 50.17 REMARK 500 LYS A 265 83.64 -150.25 REMARK 500 LYS B 32 -94.52 -105.12 REMARK 500 ASP B 45 -119.78 49.44 REMARK 500 ASP B 70 172.83 67.82 REMARK 500 THR B 71 -157.22 -131.27 REMARK 500 ALA B 72 -153.74 -127.38 REMARK 500 ASP B 139 50.06 -146.15 REMARK 500 SER B 202 135.94 115.80 REMARK 500 ALA B 206 -121.93 50.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 806 O REMARK 620 2 HIS A 101 NE2 113.1 REMARK 620 3 HIS A 103 ND1 114.4 97.3 REMARK 620 4 HIS A 177 NE2 132.0 97.7 96.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD2 REMARK 620 2 HOH A 806 O 85.8 REMARK 620 3 HIS A 106 NE2 91.1 110.1 REMARK 620 4 HIS A 242 NE2 89.8 149.6 100.0 REMARK 620 5 HOH A 807 O 167.4 88.2 101.3 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 805 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 ND1 REMARK 620 2 LYS A 229 NZ 124.2 REMARK 620 3 GLU A 158 OE2 111.4 111.9 REMARK 620 4 HOH A 858 O 103.3 102.3 99.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 106 NE2 REMARK 620 2 HIS B 242 NE2 101.3 REMARK 620 3 HOH B 807 O 103.0 89.7 REMARK 620 4 HOH B 882 O 110.0 148.4 87.6 REMARK 620 5 ASP B 105 OD2 89.6 88.8 167.3 87.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 NE2 REMARK 620 2 HOH B 882 O 110.7 REMARK 620 3 HIS B 103 ND1 97.7 117.0 REMARK 620 4 HIS B 177 NE2 98.9 129.1 98.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 806 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 158 OE2 REMARK 620 2 HIS B 172 ND1 113.4 REMARK 620 3 LYS B 229 NZ 113.2 123.1 REMARK 620 4 HOH B 864 O 100.3 101.3 100.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K07 RELATED DB: PDB REMARK 900 NATIVE FEZ-1 METALLO-BETA-LACTAMASE FROM LEGIONELLA GORMANII DBREF 2GMN A 21 294 GB 27381341 NP_772870 21 294 DBREF 2GMN B 21 294 GB 27381341 NP_772870 21 294 SEQRES 1 A 274 GLN THR ILE LYS ASP PHE LEU ALA VAL ALA MET LYS LYS SEQRES 2 A 274 TRP THR ALA PRO PHE GLU PRO PHE GLN LEU ILE ASP ASN SEQRES 3 A 274 ILE TYR TYR VAL GLY THR ASP GLY ILE ALA VAL TYR VAL SEQRES 4 A 274 ILE LYS THR SER GLN GLY LEU ILE LEU MET ASP THR ALA SEQRES 5 A 274 MET PRO GLN SER THR GLY MET ILE LYS ASP ASN ILE ALA SEQRES 6 A 274 LYS LEU GLY PHE LYS VAL ALA ASP ILE LYS LEU ILE LEU SEQRES 7 A 274 ASN THR HIS ALA HIS LEU ASP HIS THR GLY GLY PHE ALA SEQRES 8 A 274 GLU ILE LYS LYS GLU THR GLY ALA GLN LEU VAL ALA GLY SEQRES 9 A 274 GLU ARG ASP LYS PRO LEU LEU GLU GLY GLY TYR TYR PRO SEQRES 10 A 274 GLY ASP GLU LYS ASN GLU ASP LEU ALA PHE PRO ALA VAL SEQRES 11 A 274 LYS VAL ASP ARG ALA VAL LYS GLU GLY ASP ARG VAL THR SEQRES 12 A 274 LEU GLY ASP THR THR LEU THR ALA HIS ALA THR PRO GLY SEQRES 13 A 274 HIS SER PRO GLY CYS THR SER TRP GLU MET THR VAL LYS SEQRES 14 A 274 ASP GLY LYS GLU ASP ARG GLU VAL LEU PHE PHE CYS SER SEQRES 15 A 274 GLY THR VAL ALA LEU ASN ARG LEU VAL GLY GLN PRO THR SEQRES 16 A 274 TYR ALA GLY ILE VAL ASP ASP TYR ARG ALA THR PHE ALA SEQRES 17 A 274 LYS ALA LYS ALA MET LYS ILE ASP VAL LEU LEU GLY PRO SEQRES 18 A 274 HIS PRO GLU VAL TYR GLY MET GLN ALA LYS ARG ALA GLU SEQRES 19 A 274 MET LYS ASP GLY ALA PRO ASN PRO PHE ILE LYS PRO GLY SEQRES 20 A 274 GLU LEU VAL THR TYR ALA THR SER LEU SER GLU ASP PHE SEQRES 21 A 274 ASP LYS GLN LEU ALA LYS GLN THR ALA ALA LEU GLU LYS SEQRES 22 A 274 LYS SEQRES 1 B 274 GLN THR ILE LYS ASP PHE LEU ALA VAL ALA MET LYS LYS SEQRES 2 B 274 TRP THR ALA PRO PHE GLU PRO PHE GLN LEU ILE ASP ASN SEQRES 3 B 274 ILE TYR TYR VAL GLY THR ASP GLY ILE ALA VAL TYR VAL SEQRES 4 B 274 ILE LYS THR SER GLN GLY LEU ILE LEU MET ASP THR ALA SEQRES 5 B 274 MET PRO GLN SER THR GLY MET ILE LYS ASP ASN ILE ALA SEQRES 6 B 274 LYS LEU GLY PHE LYS VAL ALA ASP ILE LYS LEU ILE LEU SEQRES 7 B 274 ASN THR HIS ALA HIS LEU ASP HIS THR GLY GLY PHE ALA SEQRES 8 B 274 GLU ILE LYS LYS GLU THR GLY ALA GLN LEU VAL ALA GLY SEQRES 9 B 274 GLU ARG ASP LYS PRO LEU LEU GLU GLY GLY TYR TYR PRO SEQRES 10 B 274 GLY ASP GLU LYS ASN GLU ASP LEU ALA PHE PRO ALA VAL SEQRES 11 B 274 LYS VAL ASP ARG ALA VAL LYS GLU GLY ASP ARG VAL THR SEQRES 12 B 274 LEU GLY ASP THR THR LEU THR ALA HIS ALA THR PRO GLY SEQRES 13 B 274 HIS SER PRO GLY CYS THR SER TRP GLU MET THR VAL LYS SEQRES 14 B 274 ASP GLY LYS GLU ASP ARG GLU VAL LEU PHE PHE CYS SER SEQRES 15 B 274 GLY THR VAL ALA LEU ASN ARG LEU VAL GLY GLN PRO THR SEQRES 16 B 274 TYR ALA GLY ILE VAL ASP ASP TYR ARG ALA THR PHE ALA SEQRES 17 B 274 LYS ALA LYS ALA MET LYS ILE ASP VAL LEU LEU GLY PRO SEQRES 18 B 274 HIS PRO GLU VAL TYR GLY MET GLN ALA LYS ARG ALA GLU SEQRES 19 B 274 MET LYS ASP GLY ALA PRO ASN PRO PHE ILE LYS PRO GLY SEQRES 20 B 274 GLU LEU VAL THR TYR ALA THR SER LEU SER GLU ASP PHE SEQRES 21 B 274 ASP LYS GLN LEU ALA LYS GLN THR ALA ALA LEU GLU LYS SEQRES 22 B 274 LYS HET ZN A 801 1 HET ZN A 802 1 HET ZN A 805 1 HET ZN B 803 1 HET ZN B 804 1 HET ZN B 806 1 HETNAM ZN ZINC ION FORMUL 3 ZN 6(ZN 2+) FORMUL 9 HOH *713(H2 O) HELIX 1 1 LYS A 32 ALA A 36 5 5 HELIX 2 2 MET A 73 GLN A 75 5 3 HELIX 3 3 SER A 76 LEU A 87 1 12 HELIX 4 4 LYS A 90 ALA A 92 5 3 HELIX 5 5 HIS A 103 GLY A 108 1 6 HELIX 6 6 GLY A 109 GLY A 118 1 10 HELIX 7 7 ASP A 127 GLY A 134 1 8 HELIX 8 8 ASN A 142 ALA A 146 5 5 HELIX 9 9 GLY A 218 MET A 233 1 16 HELIX 10 10 HIS A 242 TYR A 246 5 5 HELIX 11 11 GLY A 247 MET A 255 1 9 HELIX 12 12 GLY A 267 LEU A 291 1 25 HELIX 13 13 MET B 73 GLN B 75 5 3 HELIX 14 14 SER B 76 LEU B 87 1 12 HELIX 15 15 LYS B 90 ALA B 92 5 3 HELIX 16 16 HIS B 103 GLY B 108 1 6 HELIX 17 17 GLY B 109 GLY B 118 1 10 HELIX 18 18 ASP B 127 GLY B 134 1 8 HELIX 19 19 ASN B 142 ALA B 146 5 5 HELIX 20 20 GLY B 218 MET B 233 1 16 HELIX 21 21 HIS B 242 TYR B 246 5 5 HELIX 22 22 GLY B 247 MET B 255 1 9 HELIX 23 23 GLY B 267 ALA B 290 1 24 SHEET 1 A 7 PHE A 41 ILE A 44 0 SHEET 2 A 7 ILE A 47 TYR A 49 -1 O TYR A 49 N PHE A 41 SHEET 3 A 7 TYR A 58 THR A 62 -1 O VAL A 59 N TYR A 48 SHEET 4 A 7 GLY A 65 MET A 69 -1 O ILE A 67 N ILE A 60 SHEET 5 A 7 ILE A 94 LEU A 98 1 O LEU A 98 N LEU A 68 SHEET 6 A 7 GLN A 120 GLY A 124 1 O GLN A 120 N ILE A 97 SHEET 7 A 7 ARG A 154 VAL A 156 1 O VAL A 156 N ALA A 123 SHEET 1 B 5 ARG A 161 LEU A 164 0 SHEET 2 B 5 THR A 167 ALA A 173 -1 O LEU A 169 N VAL A 162 SHEET 3 B 5 THR A 182 ASP A 190 -1 O GLU A 185 N THR A 170 SHEET 4 B 5 GLU A 193 PHE A 199 -1 O VAL A 197 N MET A 186 SHEET 5 B 5 VAL A 237 LEU A 239 1 O LEU A 239 N LEU A 198 SHEET 1 C 7 PHE B 41 ILE B 44 0 SHEET 2 C 7 ILE B 47 TYR B 49 -1 O TYR B 49 N PHE B 41 SHEET 3 C 7 TYR B 58 THR B 62 -1 O VAL B 59 N TYR B 48 SHEET 4 C 7 GLY B 65 MET B 69 -1 O MET B 69 N TYR B 58 SHEET 5 C 7 ILE B 94 LEU B 98 1 O LEU B 98 N LEU B 68 SHEET 6 C 7 GLN B 120 GLY B 124 1 O GLN B 120 N ILE B 97 SHEET 7 C 7 ARG B 154 VAL B 156 1 O VAL B 156 N ALA B 123 SHEET 1 D 5 ARG B 161 LEU B 164 0 SHEET 2 D 5 THR B 167 ALA B 173 -1 O LEU B 169 N VAL B 162 SHEET 3 D 5 THR B 182 ASP B 190 -1 O GLU B 185 N THR B 170 SHEET 4 D 5 GLU B 193 PHE B 199 -1 O VAL B 197 N MET B 186 SHEET 5 D 5 VAL B 237 LEU B 239 1 O LEU B 239 N LEU B 198 SSBOND 1 CYS A 181 CYS A 201 1555 1555 2.06 SSBOND 2 CYS B 181 CYS B 201 1555 1555 2.08 LINK ZN ZN A 801 O HOH A 806 1555 1555 1.97 LINK ZN ZN A 801 NE2 HIS A 101 1555 1555 2.09 LINK ZN ZN A 801 ND1 HIS A 103 1555 1555 2.10 LINK ZN ZN A 801 NE2 HIS A 177 1555 1555 2.04 LINK ZN ZN A 802 OD2 ASP A 105 1555 1555 2.06 LINK ZN ZN A 802 O HOH A 806 1555 1555 2.07 LINK ZN ZN A 802 NE2 HIS A 106 1555 1555 2.09 LINK ZN ZN A 802 NE2 HIS A 242 1555 1555 2.06 LINK ZN ZN A 802 O HOH A 807 1555 1555 2.53 LINK ZN ZN A 805 ND1 HIS A 172 1555 1555 2.06 LINK ZN ZN A 805 NZ LYS A 229 1555 1555 2.01 LINK ZN ZN A 805 OE2 GLU A 158 1555 1555 2.07 LINK ZN ZN A 805 O HOH A 858 1555 1555 2.04 LINK ZN ZN B 803 NE2 HIS B 106 1555 1555 2.08 LINK ZN ZN B 803 NE2 HIS B 242 1555 1555 2.09 LINK ZN ZN B 803 O HOH B 807 1555 1555 2.46 LINK ZN ZN B 803 O HOH B 882 1555 1555 1.97 LINK ZN ZN B 803 OD2 ASP B 105 1555 1555 2.09 LINK ZN ZN B 804 NE2 HIS B 101 1555 1555 2.10 LINK ZN ZN B 804 O HOH B 882 1555 1555 2.02 LINK ZN ZN B 804 ND1 HIS B 103 1555 1555 2.12 LINK ZN ZN B 804 NE2 HIS B 177 1555 1555 1.99 LINK ZN ZN B 806 OE2 GLU B 158 1555 1555 2.01 LINK ZN ZN B 806 ND1 HIS B 172 1555 1555 2.08 LINK ZN ZN B 806 NZ LYS B 229 1555 1555 2.01 LINK ZN ZN B 806 O HOH B 864 1555 1555 2.06 SITE 1 AC1 5 HIS A 101 HIS A 103 HIS A 177 ZN A 802 SITE 2 AC1 5 HOH A 806 SITE 1 AC2 6 ASP A 105 HIS A 106 HIS A 242 ZN A 801 SITE 2 AC2 6 HOH A 806 HOH A 807 SITE 1 AC3 6 ASP B 105 HIS B 106 HIS B 242 ZN B 804 SITE 2 AC3 6 HOH B 807 HOH B 882 SITE 1 AC4 5 HIS B 101 HIS B 103 HIS B 177 ZN B 803 SITE 2 AC4 5 HOH B 882 SITE 1 AC5 4 GLU A 158 HIS A 172 LYS A 229 HOH A 858 SITE 1 AC6 4 GLU B 158 HIS B 172 LYS B 229 HOH B 864 CRYST1 42.501 44.773 76.966 78.92 89.51 61.91 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023529 -0.012560 0.002539 0.00000 SCALE2 0.000000 0.025318 -0.005530 0.00000 SCALE3 0.000000 0.000000 0.013299 0.00000