HEADER VIRAL PROTEIN 07-APR-06 2GMO TITLE NMR-STRUCTURE OF AN INDEPENDENTLY FOLDED C-TERMINAL DOMAIN OF TITLE 2 INFLUENZA POLYMERASE SUBUNIT PB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PB2 C-TERMINAL 678-759 FRAGMENT; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/VICTORIA/3/1975(H3N2)); SOURCE 3 ORGANISM_TAXID: 392809; SOURCE 4 STRAIN: A/VICTORIA/3/75(H3N2); SOURCE 5 GENE: PB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRIEX KEYWDS COMPACT BETA-STRUCTURE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.BOUDET,F.TARENDEAU,D.GUILLIGAY,P.MAS,C.M.BOUGAULT,S.CUSACK,J.- AUTHOR 2 P.SIMORRE,D.J.HART REVDAT 5 29-MAY-24 2GMO 1 REMARK REVDAT 4 09-MAR-22 2GMO 1 REMARK SEQADV REVDAT 3 24-FEB-09 2GMO 1 VERSN REVDAT 2 13-MAR-07 2GMO 1 JRNL REVDAT 1 27-FEB-07 2GMO 0 JRNL AUTH F.TARENDEAU,J.BOUDET,D.GUILLIGAY,P.J.MAS,C.M.BOUGAULT, JRNL AUTH 2 S.BOULO,F.BAUDIN,R.W.RUIGROK,N.DAIGLE,J.ELLENBERG,S.CUSACK, JRNL AUTH 3 J.P.SIMORRE,D.J.HART JRNL TITL STRUCTURE AND NUCLEAR IMPORT FUNCTION OF THE C-TERMINAL JRNL TITL 2 DOMAIN OF INFLUENZA VIRUS POLYMERASE PB2 SUBUNIT. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 229 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17310249 JRNL DOI 10.1038/NSMB1212 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS CNS_SOLVE_1.1, CNS CNS_SOLVE_1.1 REMARK 3 AUTHORS : BRUNGER A. T. ET ALL (CNS), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STARTING FROM EXTENDED CONFORMATION, REMARK 3 1000 STRUCTURES CALCULATED WITH CNS USING DISTANCE AND DIHEDRAL REMARK 3 RESTRAINTS FROM NOE DATA AND TALOS, HYDROGEN BONDS ADDED FROM REMARK 3 EXCHANGE EXPERIMENT REMARK 4 REMARK 4 2GMO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037302. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 200 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM TRIS BUFFER PH 7.5, 200 MM REMARK 210 NACL, 1 MM EDTA, 0.01% NAN3, 90% REMARK 210 H2O, 10% D2O; 50 MM TRIS BUFFER REMARK 210 PH 7.5, 200 MM NACL, 1 MM EDTA, REMARK 210 0.01% NAN3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY-HSQC; 3D 13C-NOESY REMARK 210 -HSQC; 3D METHYL-SELECTIVE 13C- REMARK 210 NOESY-HSQC; HNHA; 2D HOMONUCLEAR REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : 10 STRUCTURES OF LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 677 REMARK 465 ASP A 678 REMARK 465 PRO A 679 REMARK 465 ASP A 680 REMARK 465 GLU A 681 REMARK 465 SER A 682 REMARK 465 THR A 683 REMARK 465 SER A 684 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 697 -96.53 -89.81 REMARK 500 1 PRO A 706 -66.85 -92.32 REMARK 500 1 ALA A 722 127.34 -172.39 REMARK 500 1 LYS A 736 -178.61 -60.40 REMARK 500 1 ARG A 739 -72.48 -173.64 REMARK 500 1 LEU A 744 101.36 64.14 REMARK 500 2 LEU A 697 -96.43 -83.47 REMARK 500 2 PRO A 706 -64.02 -91.65 REMARK 500 2 LEU A 708 -167.21 -76.72 REMARK 500 2 ALA A 722 126.61 -172.08 REMARK 500 2 ARG A 739 -75.77 -169.26 REMARK 500 2 LEU A 744 -13.75 71.64 REMARK 500 2 ASP A 746 -74.39 -142.77 REMARK 500 2 ALA A 750 -82.33 -78.76 REMARK 500 2 THR A 751 -17.06 68.67 REMARK 500 2 ILE A 754 152.41 -42.47 REMARK 500 3 LEU A 691 -82.84 -55.87 REMARK 500 3 ARG A 692 -62.75 -179.73 REMARK 500 3 LEU A 697 -92.60 -80.42 REMARK 500 3 PRO A 706 -73.84 -90.87 REMARK 500 3 ALA A 707 100.42 58.90 REMARK 500 3 ARG A 739 -19.69 -174.03 REMARK 500 3 ASP A 740 -175.77 -68.46 REMARK 500 3 SER A 742 -78.46 68.79 REMARK 500 3 LEU A 744 -81.08 69.13 REMARK 500 3 ASP A 746 -18.47 -141.35 REMARK 500 3 ARG A 753 144.29 65.46 REMARK 500 3 ILE A 754 156.45 -46.51 REMARK 500 3 ARG A 755 32.84 -88.00 REMARK 500 3 ALA A 757 -167.58 -71.21 REMARK 500 3 ILE A 758 -33.16 -132.85 REMARK 500 4 LEU A 697 -96.02 -102.66 REMARK 500 4 PRO A 706 -69.58 -90.60 REMARK 500 4 ALA A 707 82.57 54.84 REMARK 500 4 GLN A 728 36.31 -158.99 REMARK 500 4 ASP A 740 179.72 61.89 REMARK 500 4 SER A 741 106.36 62.78 REMARK 500 4 LEU A 744 85.32 60.79 REMARK 500 4 ARG A 753 169.73 173.41 REMARK 500 5 LEU A 697 -96.40 -83.53 REMARK 500 5 LYS A 699 64.56 -103.13 REMARK 500 5 ARG A 702 -7.40 -59.20 REMARK 500 5 PRO A 706 -68.54 -92.98 REMARK 500 5 GLN A 728 92.65 56.21 REMARK 500 5 LYS A 736 -175.42 -68.55 REMARK 500 5 LYS A 738 -32.47 71.94 REMARK 500 5 ARG A 739 -58.24 -177.78 REMARK 500 5 ASP A 746 -35.01 -161.89 REMARK 500 6 ARG A 692 99.87 61.08 REMARK 500 6 LEU A 697 -98.91 -87.06 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JDQ RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT IN REMARK 900 COMPLEX WITH HUMAN IMPORTIN ALPHA5. DBREF 2GMO A 678 759 UNP P31345 PB2_IAVI7 678 759 SEQADV 2GMO GLY A 677 UNP P31345 CLONING ARTIFACT SEQRES 1 A 83 GLY ASP PRO ASP GLU SER THR SER GLY VAL GLU SER ALA SEQRES 2 A 83 VAL LEU ARG GLY PHE LEU ILE LEU GLY LYS GLU ASP ARG SEQRES 3 A 83 ARG TYR GLY PRO ALA LEU SER ILE ASN GLU LEU SER ASN SEQRES 4 A 83 LEU ALA LYS GLY GLU LYS ALA ASN VAL LEU ILE GLY GLN SEQRES 5 A 83 GLY ASP VAL VAL LEU VAL MET LYS ARG LYS ARG ASP SER SEQRES 6 A 83 SER ILE LEU THR ASP SER GLN THR ALA THR LYS ARG ILE SEQRES 7 A 83 ARG MET ALA ILE ASN HELIX 1 1 GLY A 685 ARG A 692 1 8 HELIX 2 2 ASP A 701 GLY A 705 5 5 HELIX 3 3 SER A 709 SER A 714 1 6 SHEET 1 A 3 LEU A 695 GLY A 698 0 SHEET 2 A 3 VAL A 731 MET A 735 -1 O LEU A 733 N GLY A 698 SHEET 3 A 3 LYS A 721 LEU A 725 -1 N VAL A 724 O VAL A 732 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1