data_2GN2 # _entry.id 2GN2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GN2 pdb_00002gn2 10.2210/pdb2gn2/pdb RCSB RCSB037315 ? ? WWPDB D_1000037315 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2GN0 ;Dimeric structure of Biodegradative threonine deaminase (TdcB)at 1.7A resolution in triclinic form with two dimers of TdcB in the asymmetric unit ; unspecified PDB 2GN1 ;Dimeric structure of Biodegradative threonine deaminase (TdcB) at 2.2A resolution in triclinic form with one dimer of TdcB in the asymmetric unit ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GN2 _pdbx_database_status.recvd_initial_deposition_date 2006-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Simanshu, D.K.' 1 'Savithri, H.S.' 2 'Murthy, M.R.N.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation. ; J.Biol.Chem. 281 39630 39641 2006 JBCHA3 US 0021-9258 0071 ? 17046821 10.1074/jbc.M605721200 1 ;Crystallization and preliminary X-ray crystallographic analysis of biodegradative threonine deaminase (TdcB) from Salmonella typhimurium ; 'Acta Crystallogr.,Sect.F' 62 275 278 2006 ? DK 1744-3091 ? ? 16511321 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Simanshu, D.K.' 1 ? primary 'Savithri, H.S.' 2 ? primary 'Murthy, M.R.' 3 ? 1 'Simanshu, D.K.' 4 ? 1 'Chittori, S.' 5 ? 1 'Savithri, H.S.' 6 ? 1 'Murthy, M.R.' 7 ? # _cell.entry_id 2GN2 _cell.length_a 161.145 _cell.length_b 161.145 _cell.length_c 68.723 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GN2 _symmetry.space_group_name_H-M 'P 6 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Threonine dehydratase catabolic' 36887.086 1 4.3.1.19 ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 1 ? ? ? ? 4 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Threonine deaminase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGMASHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSF(LLP)IRGAF NKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVE TEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTG EITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLSGKLDSHIQN RKTVSIISGGNIDLSRVSQITGLVDA ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGMASHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLS SLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGR IFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITT HRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLSGKLDSHIQNRKTV SIISGGNIDLSRVSQITGLVDA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 MET n 1 13 ALA n 1 14 SER n 1 15 HIS n 1 16 ILE n 1 17 THR n 1 18 TYR n 1 19 ASP n 1 20 LEU n 1 21 PRO n 1 22 VAL n 1 23 ALA n 1 24 ILE n 1 25 GLU n 1 26 ASP n 1 27 ILE n 1 28 LEU n 1 29 GLU n 1 30 ALA n 1 31 LYS n 1 32 LYS n 1 33 ARG n 1 34 LEU n 1 35 ALA n 1 36 GLY n 1 37 LYS n 1 38 ILE n 1 39 TYR n 1 40 LYS n 1 41 THR n 1 42 GLY n 1 43 MET n 1 44 PRO n 1 45 ARG n 1 46 SER n 1 47 ASN n 1 48 TYR n 1 49 PHE n 1 50 SER n 1 51 GLU n 1 52 ARG n 1 53 CYS n 1 54 LYS n 1 55 GLY n 1 56 GLU n 1 57 ILE n 1 58 PHE n 1 59 LEU n 1 60 LYS n 1 61 PHE n 1 62 GLU n 1 63 ASN n 1 64 MET n 1 65 GLN n 1 66 ARG n 1 67 THR n 1 68 GLY n 1 69 SER n 1 70 PHE n 1 71 LLP n 1 72 ILE n 1 73 ARG n 1 74 GLY n 1 75 ALA n 1 76 PHE n 1 77 ASN n 1 78 LYS n 1 79 LEU n 1 80 SER n 1 81 SER n 1 82 LEU n 1 83 THR n 1 84 GLU n 1 85 ALA n 1 86 GLU n 1 87 LYS n 1 88 ARG n 1 89 LYS n 1 90 GLY n 1 91 VAL n 1 92 VAL n 1 93 ALA n 1 94 CYS n 1 95 SER n 1 96 ALA n 1 97 GLY n 1 98 ASN n 1 99 HIS n 1 100 ALA n 1 101 GLN n 1 102 GLY n 1 103 VAL n 1 104 SER n 1 105 LEU n 1 106 SER n 1 107 CYS n 1 108 ALA n 1 109 MET n 1 110 LEU n 1 111 GLY n 1 112 ILE n 1 113 ASP n 1 114 GLY n 1 115 LYS n 1 116 VAL n 1 117 VAL n 1 118 MET n 1 119 PRO n 1 120 LYS n 1 121 GLY n 1 122 ALA n 1 123 PRO n 1 124 LYS n 1 125 SER n 1 126 LYS n 1 127 VAL n 1 128 ALA n 1 129 ALA n 1 130 THR n 1 131 CYS n 1 132 ASP n 1 133 TYR n 1 134 SER n 1 135 ALA n 1 136 GLU n 1 137 VAL n 1 138 VAL n 1 139 LEU n 1 140 HIS n 1 141 GLY n 1 142 ASP n 1 143 ASN n 1 144 PHE n 1 145 ASN n 1 146 ASP n 1 147 THR n 1 148 ILE n 1 149 ALA n 1 150 LYS n 1 151 VAL n 1 152 SER n 1 153 GLU n 1 154 ILE n 1 155 VAL n 1 156 GLU n 1 157 THR n 1 158 GLU n 1 159 GLY n 1 160 ARG n 1 161 ILE n 1 162 PHE n 1 163 ILE n 1 164 PRO n 1 165 PRO n 1 166 TYR n 1 167 ASP n 1 168 ASP n 1 169 PRO n 1 170 LYS n 1 171 VAL n 1 172 ILE n 1 173 ALA n 1 174 GLY n 1 175 GLN n 1 176 GLY n 1 177 THR n 1 178 ILE n 1 179 GLY n 1 180 LEU n 1 181 GLU n 1 182 ILE n 1 183 MET n 1 184 GLU n 1 185 ASP n 1 186 LEU n 1 187 TYR n 1 188 ASP n 1 189 VAL n 1 190 ASP n 1 191 ASN n 1 192 VAL n 1 193 ILE n 1 194 VAL n 1 195 PRO n 1 196 ILE n 1 197 GLY n 1 198 GLY n 1 199 GLY n 1 200 GLY n 1 201 LEU n 1 202 ILE n 1 203 ALA n 1 204 GLY n 1 205 ILE n 1 206 ALA n 1 207 ILE n 1 208 ALA n 1 209 ILE n 1 210 LYS n 1 211 SER n 1 212 ILE n 1 213 ASN n 1 214 PRO n 1 215 THR n 1 216 ILE n 1 217 LYS n 1 218 VAL n 1 219 ILE n 1 220 GLY n 1 221 VAL n 1 222 GLN n 1 223 ALA n 1 224 GLU n 1 225 ASN n 1 226 VAL n 1 227 HIS n 1 228 GLY n 1 229 MET n 1 230 ALA n 1 231 ALA n 1 232 SER n 1 233 TYR n 1 234 TYR n 1 235 THR n 1 236 GLY n 1 237 GLU n 1 238 ILE n 1 239 THR n 1 240 THR n 1 241 HIS n 1 242 ARG n 1 243 THR n 1 244 THR n 1 245 GLY n 1 246 THR n 1 247 LEU n 1 248 ALA n 1 249 ASP n 1 250 GLY n 1 251 CYS n 1 252 ASP n 1 253 VAL n 1 254 SER n 1 255 ARG n 1 256 PRO n 1 257 GLY n 1 258 ASN n 1 259 LEU n 1 260 THR n 1 261 TYR n 1 262 GLU n 1 263 ILE n 1 264 VAL n 1 265 ARG n 1 266 GLU n 1 267 LEU n 1 268 VAL n 1 269 ASP n 1 270 ASP n 1 271 ILE n 1 272 VAL n 1 273 LEU n 1 274 VAL n 1 275 SER n 1 276 GLU n 1 277 ASP n 1 278 GLU n 1 279 ILE n 1 280 ARG n 1 281 ASN n 1 282 SER n 1 283 MET n 1 284 ILE n 1 285 ALA n 1 286 LEU n 1 287 ILE n 1 288 GLN n 1 289 ARG n 1 290 ASN n 1 291 LYS n 1 292 VAL n 1 293 ILE n 1 294 THR n 1 295 GLU n 1 296 GLY n 1 297 ALA n 1 298 GLY n 1 299 ALA n 1 300 LEU n 1 301 ALA n 1 302 CYS n 1 303 ALA n 1 304 ALA n 1 305 LEU n 1 306 LEU n 1 307 SER n 1 308 GLY n 1 309 LYS n 1 310 LEU n 1 311 ASP n 1 312 SER n 1 313 HIS n 1 314 ILE n 1 315 GLN n 1 316 ASN n 1 317 ARG n 1 318 LYS n 1 319 THR n 1 320 VAL n 1 321 SER n 1 322 ILE n 1 323 ILE n 1 324 SER n 1 325 GLY n 1 326 GLY n 1 327 ASN n 1 328 ILE n 1 329 ASP n 1 330 LEU n 1 331 SER n 1 332 ARG n 1 333 VAL n 1 334 SER n 1 335 GLN n 1 336 ILE n 1 337 THR n 1 338 GLY n 1 339 LEU n 1 340 VAL n 1 341 ASP n 1 342 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene tdcB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'IFO 12529' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 602 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pRSET C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THD2_SALTY _struct_ref.pdbx_db_accession P11954 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVAC SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIAG QGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGCDVS RPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSIISGGNIDLSRVS QITGLVDA ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GN2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 15 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 342 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11954 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 329 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GN2 MET A 1 ? UNP P11954 ? ? 'cloning artifact' -12 1 1 2GN2 ARG A 2 ? UNP P11954 ? ? 'cloning artifact' -11 2 1 2GN2 GLY A 3 ? UNP P11954 ? ? 'cloning artifact' -10 3 1 2GN2 SER A 4 ? UNP P11954 ? ? 'cloning artifact' -9 4 1 2GN2 HIS A 5 ? UNP P11954 ? ? 'expression tag' -8 5 1 2GN2 HIS A 6 ? UNP P11954 ? ? 'expression tag' -7 6 1 2GN2 HIS A 7 ? UNP P11954 ? ? 'expression tag' -6 7 1 2GN2 HIS A 8 ? UNP P11954 ? ? 'expression tag' -5 8 1 2GN2 HIS A 9 ? UNP P11954 ? ? 'expression tag' -4 9 1 2GN2 HIS A 10 ? UNP P11954 ? ? 'expression tag' -3 10 1 2GN2 GLY A 11 ? UNP P11954 ? ? 'cloning artifact' -2 11 1 2GN2 MET A 12 ? UNP P11954 ? ? 'cloning artifact' -1 12 1 2GN2 ALA A 13 ? UNP P11954 ? ? 'cloning artifact' 0 13 1 2GN2 SER A 14 ? UNP P11954 ? ? 'cloning artifact' 1 14 1 2GN2 LLP A 71 ? UNP P11954 LYS 58 'modified residue' 58 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C5P non-polymer . "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LLP 'L-peptide linking' n '(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid' "N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE" 'C14 H22 N3 O7 P' 375.314 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2GN2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.49 _exptl_crystal.density_percent_sol 64.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '0.1 M Citrate, 25% PEG4000, 10% Hexanediol , pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAC Science DIP-2030' _diffrn_detector.pdbx_collection_date 2006-03-20 _diffrn_detector.details 'Osmic mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRROR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.93 # _reflns.entry_id 2GN2 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.50 _reflns.number_obs 18675 _reflns.number_all 18675 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 53.4 _reflns.B_iso_Wilson_estimate 66.0 _reflns.pdbx_redundancy 39.32 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.383 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.56 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1820 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2GN2 _refine.ls_number_reflns_obs 17629 _refine.ls_number_reflns_all 17629 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.63 _refine.ls_R_factor_obs 0.19823 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1967 _refine.ls_R_factor_R_free 0.2259 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 951 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 62.336 _refine.aniso_B[1][1] -1.06 _refine.aniso_B[2][2] -1.06 _refine.aniso_B[3][3] 1.59 _refine.aniso_B[1][2] -0.53 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ;BIODEGRADATIVE THREONINE DEAMINASE FROM SALMONELLA TYPHIMURIUM (PDB CODE 1GN0) ; _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.289 _refine.pdbx_overall_ESU_R_Free 0.218 _refine.overall_SU_ML 0.150 _refine.overall_SU_B 13.455 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2432 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 2516 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 2484 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2325 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.062 1.992 ? 3362 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.717 3.000 ? 5411 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.360 5.000 ? 325 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.105 24.839 ? 93 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.165 15.000 ? 436 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.223 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.057 0.200 ? 398 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 2753 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 452 'X-RAY DIFFRACTION' ? r_nbd_refined 0.198 0.200 ? 511 'X-RAY DIFFRACTION' ? r_nbd_other 0.163 0.200 ? 2317 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.168 0.200 ? 1272 'X-RAY DIFFRACTION' ? r_nbtor_other 0.080 0.200 ? 1465 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.141 0.200 ? 80 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.096 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.280 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.126 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.106 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.064 0.200 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_it 0.272 1.500 ? 1606 'X-RAY DIFFRACTION' ? r_mcbond_other 0.050 1.500 ? 677 'X-RAY DIFFRACTION' ? r_mcangle_it 0.530 2.000 ? 2581 'X-RAY DIFFRACTION' ? r_scbond_it 0.883 3.000 ? 891 'X-RAY DIFFRACTION' ? r_scangle_it 1.509 4.500 ? 781 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.502 _refine_ls_shell.d_res_low 2.567 _refine_ls_shell.number_reflns_R_work 1254 _refine_ls_shell.R_factor_R_work 0.238 _refine_ls_shell.percent_reflns_obs 97.92 _refine_ls_shell.R_factor_R_free 0.241 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1254 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GN2 _struct.title ;Crystal structure of tetrameric biodegradative threonine deaminase (TdcB) from Salmonella typhimurium in complex with CMP at 2.5A resolution (Hexagonal form) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GN2 _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'TdcB, Biodegradative threonine deaminase, PLP, CMP, Threonine dehydratase, L-threonine metabolism, Lyase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The monomeric molecule is centered at the point of 222 symmetry. The biological assembly is a teramer generated from the monomer in the asymmetric unit by the operations: -Y,-X,-Z ; -X, -Y, Z; Y, X, -Z. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 23 ? ALA A 35 ? ALA A 10 ALA A 22 1 ? 13 HELX_P HELX_P2 2 SER A 46 ? LYS A 54 ? SER A 33 LYS A 41 1 ? 9 HELX_P HELX_P3 3 ASN A 63 ? PHE A 70 ? ASN A 50 PHE A 57 5 ? 8 HELX_P HELX_P4 4 LLP A 71 ? LEU A 82 ? LLP A 58 LEU A 69 1 ? 12 HELX_P HELX_P5 5 THR A 83 ? LYS A 89 ? THR A 70 LYS A 76 1 ? 7 HELX_P HELX_P6 6 GLY A 97 ? GLY A 111 ? GLY A 84 GLY A 98 1 ? 15 HELX_P HELX_P7 7 PRO A 123 ? TYR A 133 ? PRO A 110 TYR A 120 1 ? 11 HELX_P HELX_P8 8 ASN A 143 ? GLY A 159 ? ASN A 130 GLY A 146 1 ? 17 HELX_P HELX_P9 9 ASP A 168 ? GLY A 176 ? ASP A 155 GLY A 163 1 ? 9 HELX_P HELX_P10 10 GLY A 176 ? LEU A 186 ? GLY A 163 LEU A 173 1 ? 11 HELX_P HELX_P11 11 GLY A 199 ? ASN A 213 ? GLY A 186 ASN A 200 1 ? 15 HELX_P HELX_P12 12 HIS A 227 ? GLY A 236 ? HIS A 214 GLY A 223 1 ? 10 HELX_P HELX_P13 13 ALA A 248 ? ASP A 252 ? ALA A 235 ASP A 239 5 ? 5 HELX_P HELX_P14 14 GLY A 257 ? VAL A 268 ? GLY A 244 VAL A 255 1 ? 12 HELX_P HELX_P15 15 SER A 275 ? LYS A 291 ? SER A 262 LYS A 278 1 ? 17 HELX_P HELX_P16 16 GLY A 296 ? GLY A 298 ? GLY A 283 GLY A 285 5 ? 3 HELX_P HELX_P17 17 ALA A 299 ? GLY A 308 ? ALA A 286 GLY A 295 1 ? 10 HELX_P HELX_P18 18 LEU A 310 ? GLN A 315 ? LEU A 297 GLN A 302 1 ? 6 HELX_P HELX_P19 19 ASP A 329 ? LEU A 339 ? ASP A 316 LEU A 326 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 131 SG ? ? ? 1_555 A CYS 131 SG ? ? A CYS 118 A CYS 118 11_554 ? ? ? ? ? ? ? 2.864 ? ? covale1 covale both ? A PHE 70 C ? ? ? 1_555 A LLP 71 N ? ? A PHE 57 A LLP 58 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale2 covale both ? A LLP 71 C ? ? ? 1_555 A ILE 72 N ? ? A LLP 58 A ILE 59 1_555 ? ? ? ? ? ? ? 1.331 ? ? metalc1 metalc ? ? A GLU 184 O ? ? ? 1_555 B NA . NA ? ? A GLU 171 A NA 401 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc2 metalc ? ? A GLU 184 O ? ? ? 4_445 B NA . NA ? ? A GLU 171 A NA 401 1_555 ? ? ? ? ? ? ? 2.349 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 56 ? PHE A 61 ? GLU A 43 PHE A 48 A 2 LYS A 318 ? ILE A 323 ? LYS A 305 ILE A 310 A 3 ASN A 191 ? PRO A 195 ? ASN A 178 PRO A 182 A 4 LYS A 217 ? ALA A 223 ? LYS A 204 ALA A 210 A 5 ASP A 270 ? VAL A 274 ? ASP A 257 VAL A 261 B 1 GLU A 136 ? LEU A 139 ? GLU A 123 LEU A 126 B 2 GLY A 114 ? MET A 118 ? GLY A 101 MET A 105 B 3 VAL A 91 ? CYS A 94 ? VAL A 78 CYS A 81 B 4 ILE A 161 ? PHE A 162 ? ILE A 148 PHE A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 58 ? N PHE A 45 O SER A 321 ? O SER A 308 A 2 3 O VAL A 320 ? O VAL A 307 N ILE A 193 ? N ILE A 180 A 3 4 N VAL A 192 ? N VAL A 179 O ILE A 219 ? O ILE A 206 A 4 5 N GLY A 220 ? N GLY A 207 O ASP A 270 ? O ASP A 257 B 1 2 O GLU A 136 ? O GLU A 123 N VAL A 116 ? N VAL A 103 B 2 3 O VAL A 117 ? O VAL A 104 N ALA A 93 ? N ALA A 80 B 3 4 N VAL A 92 ? N VAL A 79 O ILE A 161 ? O ILE A 148 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 401 ? 2 'BINDING SITE FOR RESIDUE NA A 401' AC2 Software A C5P 400 ? 16 'BINDING SITE FOR RESIDUE C5P A 400' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLU A 184 ? GLU A 171 . ? 4_445 ? 2 AC1 2 GLU A 184 ? GLU A 171 . ? 1_555 ? 3 AC2 16 ASN A 47 ? ASN A 34 . ? 10_444 ? 4 AC2 16 ARG A 66 ? ARG A 53 . ? 1_555 ? 5 AC2 16 THR A 67 ? THR A 54 . ? 1_555 ? 6 AC2 16 GLY A 68 ? GLY A 55 . ? 1_555 ? 7 AC2 16 GLN A 101 ? GLN A 88 . ? 1_555 ? 8 AC2 16 ALA A 129 ? ALA A 116 . ? 1_555 ? 9 AC2 16 ASP A 132 ? ASP A 119 . ? 1_555 ? 10 AC2 16 TYR A 133 ? TYR A 120 . ? 1_555 ? 11 AC2 16 GLN A 288 ? GLN A 275 . ? 10_444 ? 12 AC2 16 ARG A 289 ? ARG A 276 . ? 10_444 ? 13 AC2 16 LYS A 291 ? LYS A 278 . ? 10_444 ? 14 AC2 16 ASN A 327 ? ASN A 314 . ? 1_555 ? 15 AC2 16 HOH D . ? HOH A 412 . ? 1_555 ? 16 AC2 16 HOH D . ? HOH A 424 . ? 1_555 ? 17 AC2 16 HOH D . ? HOH A 425 . ? 1_555 ? 18 AC2 16 HOH D . ? HOH A 441 . ? 1_555 ? # _database_PDB_matrix.entry_id 2GN2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GN2 _atom_sites.fract_transf_matrix[1][1] 0.006206 _atom_sites.fract_transf_matrix[1][2] 0.003583 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007166 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014551 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -12 ? ? ? A . n A 1 2 ARG 2 -11 ? ? ? A . n A 1 3 GLY 3 -10 ? ? ? A . n A 1 4 SER 4 -9 ? ? ? A . n A 1 5 HIS 5 -8 ? ? ? A . n A 1 6 HIS 6 -7 ? ? ? A . n A 1 7 HIS 7 -6 ? ? ? A . n A 1 8 HIS 8 -5 ? ? ? A . n A 1 9 HIS 9 -4 ? ? ? A . n A 1 10 HIS 10 -3 ? ? ? A . n A 1 11 GLY 11 -2 ? ? ? A . n A 1 12 MET 12 -1 ? ? ? A . n A 1 13 ALA 13 0 ? ? ? A . n A 1 14 SER 14 1 ? ? ? A . n A 1 15 HIS 15 2 ? ? ? A . n A 1 16 ILE 16 3 3 ILE ILE A . n A 1 17 THR 17 4 4 THR THR A . n A 1 18 TYR 18 5 5 TYR TYR A . n A 1 19 ASP 19 6 6 ASP ASP A . n A 1 20 LEU 20 7 7 LEU LEU A . n A 1 21 PRO 21 8 8 PRO PRO A . n A 1 22 VAL 22 9 9 VAL VAL A . n A 1 23 ALA 23 10 10 ALA ALA A . n A 1 24 ILE 24 11 11 ILE ILE A . n A 1 25 GLU 25 12 12 GLU GLU A . n A 1 26 ASP 26 13 13 ASP ASP A . n A 1 27 ILE 27 14 14 ILE ILE A . n A 1 28 LEU 28 15 15 LEU LEU A . n A 1 29 GLU 29 16 16 GLU GLU A . n A 1 30 ALA 30 17 17 ALA ALA A . n A 1 31 LYS 31 18 18 LYS LYS A . n A 1 32 LYS 32 19 19 LYS LYS A . n A 1 33 ARG 33 20 20 ARG ARG A . n A 1 34 LEU 34 21 21 LEU LEU A . n A 1 35 ALA 35 22 22 ALA ALA A . n A 1 36 GLY 36 23 23 GLY GLY A . n A 1 37 LYS 37 24 24 LYS LYS A . n A 1 38 ILE 38 25 25 ILE ILE A . n A 1 39 TYR 39 26 26 TYR TYR A . n A 1 40 LYS 40 27 27 LYS LYS A . n A 1 41 THR 41 28 28 THR THR A . n A 1 42 GLY 42 29 29 GLY GLY A . n A 1 43 MET 43 30 30 MET MET A . n A 1 44 PRO 44 31 31 PRO PRO A . n A 1 45 ARG 45 32 32 ARG ARG A . n A 1 46 SER 46 33 33 SER SER A . n A 1 47 ASN 47 34 34 ASN ASN A . n A 1 48 TYR 48 35 35 TYR TYR A . n A 1 49 PHE 49 36 36 PHE PHE A . n A 1 50 SER 50 37 37 SER SER A . n A 1 51 GLU 51 38 38 GLU GLU A . n A 1 52 ARG 52 39 39 ARG ARG A . n A 1 53 CYS 53 40 40 CYS CYS A . n A 1 54 LYS 54 41 41 LYS LYS A . n A 1 55 GLY 55 42 42 GLY GLY A . n A 1 56 GLU 56 43 43 GLU GLU A . n A 1 57 ILE 57 44 44 ILE ILE A . n A 1 58 PHE 58 45 45 PHE PHE A . n A 1 59 LEU 59 46 46 LEU LEU A . n A 1 60 LYS 60 47 47 LYS LYS A . n A 1 61 PHE 61 48 48 PHE PHE A . n A 1 62 GLU 62 49 49 GLU GLU A . n A 1 63 ASN 63 50 50 ASN ASN A . n A 1 64 MET 64 51 51 MET MET A . n A 1 65 GLN 65 52 52 GLN GLN A . n A 1 66 ARG 66 53 53 ARG ARG A . n A 1 67 THR 67 54 54 THR THR A . n A 1 68 GLY 68 55 55 GLY GLY A . n A 1 69 SER 69 56 56 SER SER A . n A 1 70 PHE 70 57 57 PHE PHE A . n A 1 71 LLP 71 58 58 LLP LLP A . n A 1 72 ILE 72 59 59 ILE ILE A . n A 1 73 ARG 73 60 60 ARG ARG A . n A 1 74 GLY 74 61 61 GLY GLY A . n A 1 75 ALA 75 62 62 ALA ALA A . n A 1 76 PHE 76 63 63 PHE PHE A . n A 1 77 ASN 77 64 64 ASN ASN A . n A 1 78 LYS 78 65 65 LYS LYS A . n A 1 79 LEU 79 66 66 LEU LEU A . n A 1 80 SER 80 67 67 SER SER A . n A 1 81 SER 81 68 68 SER SER A . n A 1 82 LEU 82 69 69 LEU LEU A . n A 1 83 THR 83 70 70 THR THR A . n A 1 84 GLU 84 71 71 GLU GLU A . n A 1 85 ALA 85 72 72 ALA ALA A . n A 1 86 GLU 86 73 73 GLU GLU A . n A 1 87 LYS 87 74 74 LYS LYS A . n A 1 88 ARG 88 75 75 ARG ARG A . n A 1 89 LYS 89 76 76 LYS LYS A . n A 1 90 GLY 90 77 77 GLY GLY A . n A 1 91 VAL 91 78 78 VAL VAL A . n A 1 92 VAL 92 79 79 VAL VAL A . n A 1 93 ALA 93 80 80 ALA ALA A . n A 1 94 CYS 94 81 81 CYS CYS A . n A 1 95 SER 95 82 82 SER SER A . n A 1 96 ALA 96 83 83 ALA ALA A . n A 1 97 GLY 97 84 84 GLY GLY A . n A 1 98 ASN 98 85 85 ASN ASN A . n A 1 99 HIS 99 86 86 HIS HIS A . n A 1 100 ALA 100 87 87 ALA ALA A . n A 1 101 GLN 101 88 88 GLN GLN A . n A 1 102 GLY 102 89 89 GLY GLY A . n A 1 103 VAL 103 90 90 VAL VAL A . n A 1 104 SER 104 91 91 SER SER A . n A 1 105 LEU 105 92 92 LEU LEU A . n A 1 106 SER 106 93 93 SER SER A . n A 1 107 CYS 107 94 94 CYS CYS A . n A 1 108 ALA 108 95 95 ALA ALA A . n A 1 109 MET 109 96 96 MET MET A . n A 1 110 LEU 110 97 97 LEU LEU A . n A 1 111 GLY 111 98 98 GLY GLY A . n A 1 112 ILE 112 99 99 ILE ILE A . n A 1 113 ASP 113 100 100 ASP ASP A . n A 1 114 GLY 114 101 101 GLY GLY A . n A 1 115 LYS 115 102 102 LYS LYS A . n A 1 116 VAL 116 103 103 VAL VAL A . n A 1 117 VAL 117 104 104 VAL VAL A . n A 1 118 MET 118 105 105 MET MET A . n A 1 119 PRO 119 106 106 PRO PRO A . n A 1 120 LYS 120 107 107 LYS LYS A . n A 1 121 GLY 121 108 108 GLY GLY A . n A 1 122 ALA 122 109 109 ALA ALA A . n A 1 123 PRO 123 110 110 PRO PRO A . n A 1 124 LYS 124 111 111 LYS LYS A . n A 1 125 SER 125 112 112 SER SER A . n A 1 126 LYS 126 113 113 LYS LYS A . n A 1 127 VAL 127 114 114 VAL VAL A . n A 1 128 ALA 128 115 115 ALA ALA A . n A 1 129 ALA 129 116 116 ALA ALA A . n A 1 130 THR 130 117 117 THR THR A . n A 1 131 CYS 131 118 118 CYS CYS A . n A 1 132 ASP 132 119 119 ASP ASP A . n A 1 133 TYR 133 120 120 TYR TYR A . n A 1 134 SER 134 121 121 SER SER A . n A 1 135 ALA 135 122 122 ALA ALA A . n A 1 136 GLU 136 123 123 GLU GLU A . n A 1 137 VAL 137 124 124 VAL VAL A . n A 1 138 VAL 138 125 125 VAL VAL A . n A 1 139 LEU 139 126 126 LEU LEU A . n A 1 140 HIS 140 127 127 HIS HIS A . n A 1 141 GLY 141 128 128 GLY GLY A . n A 1 142 ASP 142 129 129 ASP ASP A . n A 1 143 ASN 143 130 130 ASN ASN A . n A 1 144 PHE 144 131 131 PHE PHE A . n A 1 145 ASN 145 132 132 ASN ASN A . n A 1 146 ASP 146 133 133 ASP ASP A . n A 1 147 THR 147 134 134 THR THR A . n A 1 148 ILE 148 135 135 ILE ILE A . n A 1 149 ALA 149 136 136 ALA ALA A . n A 1 150 LYS 150 137 137 LYS LYS A . n A 1 151 VAL 151 138 138 VAL VAL A . n A 1 152 SER 152 139 139 SER SER A . n A 1 153 GLU 153 140 140 GLU GLU A . n A 1 154 ILE 154 141 141 ILE ILE A . n A 1 155 VAL 155 142 142 VAL VAL A . n A 1 156 GLU 156 143 143 GLU GLU A . n A 1 157 THR 157 144 144 THR THR A . n A 1 158 GLU 158 145 145 GLU GLU A . n A 1 159 GLY 159 146 146 GLY GLY A . n A 1 160 ARG 160 147 147 ARG ARG A . n A 1 161 ILE 161 148 148 ILE ILE A . n A 1 162 PHE 162 149 149 PHE PHE A . n A 1 163 ILE 163 150 150 ILE ILE A . n A 1 164 PRO 164 151 151 PRO PRO A . n A 1 165 PRO 165 152 152 PRO PRO A . n A 1 166 TYR 166 153 153 TYR TYR A . n A 1 167 ASP 167 154 154 ASP ASP A . n A 1 168 ASP 168 155 155 ASP ASP A . n A 1 169 PRO 169 156 156 PRO PRO A . n A 1 170 LYS 170 157 157 LYS LYS A . n A 1 171 VAL 171 158 158 VAL VAL A . n A 1 172 ILE 172 159 159 ILE ILE A . n A 1 173 ALA 173 160 160 ALA ALA A . n A 1 174 GLY 174 161 161 GLY GLY A . n A 1 175 GLN 175 162 162 GLN GLN A . n A 1 176 GLY 176 163 163 GLY GLY A . n A 1 177 THR 177 164 164 THR THR A . n A 1 178 ILE 178 165 165 ILE ILE A . n A 1 179 GLY 179 166 166 GLY GLY A . n A 1 180 LEU 180 167 167 LEU LEU A . n A 1 181 GLU 181 168 168 GLU GLU A . n A 1 182 ILE 182 169 169 ILE ILE A . n A 1 183 MET 183 170 170 MET MET A . n A 1 184 GLU 184 171 171 GLU GLU A . n A 1 185 ASP 185 172 172 ASP ASP A . n A 1 186 LEU 186 173 173 LEU LEU A . n A 1 187 TYR 187 174 174 TYR TYR A . n A 1 188 ASP 188 175 175 ASP ASP A . n A 1 189 VAL 189 176 176 VAL VAL A . n A 1 190 ASP 190 177 177 ASP ASP A . n A 1 191 ASN 191 178 178 ASN ASN A . n A 1 192 VAL 192 179 179 VAL VAL A . n A 1 193 ILE 193 180 180 ILE ILE A . n A 1 194 VAL 194 181 181 VAL VAL A . n A 1 195 PRO 195 182 182 PRO PRO A . n A 1 196 ILE 196 183 183 ILE ILE A . n A 1 197 GLY 197 184 184 GLY GLY A . n A 1 198 GLY 198 185 185 GLY GLY A . n A 1 199 GLY 199 186 186 GLY GLY A . n A 1 200 GLY 200 187 187 GLY GLY A . n A 1 201 LEU 201 188 188 LEU LEU A . n A 1 202 ILE 202 189 189 ILE ILE A . n A 1 203 ALA 203 190 190 ALA ALA A . n A 1 204 GLY 204 191 191 GLY GLY A . n A 1 205 ILE 205 192 192 ILE ILE A . n A 1 206 ALA 206 193 193 ALA ALA A . n A 1 207 ILE 207 194 194 ILE ILE A . n A 1 208 ALA 208 195 195 ALA ALA A . n A 1 209 ILE 209 196 196 ILE ILE A . n A 1 210 LYS 210 197 197 LYS LYS A . n A 1 211 SER 211 198 198 SER SER A . n A 1 212 ILE 212 199 199 ILE ILE A . n A 1 213 ASN 213 200 200 ASN ASN A . n A 1 214 PRO 214 201 201 PRO PRO A . n A 1 215 THR 215 202 202 THR THR A . n A 1 216 ILE 216 203 203 ILE ILE A . n A 1 217 LYS 217 204 204 LYS LYS A . n A 1 218 VAL 218 205 205 VAL VAL A . n A 1 219 ILE 219 206 206 ILE ILE A . n A 1 220 GLY 220 207 207 GLY GLY A . n A 1 221 VAL 221 208 208 VAL VAL A . n A 1 222 GLN 222 209 209 GLN GLN A . n A 1 223 ALA 223 210 210 ALA ALA A . n A 1 224 GLU 224 211 211 GLU GLU A . n A 1 225 ASN 225 212 212 ASN ASN A . n A 1 226 VAL 226 213 213 VAL VAL A . n A 1 227 HIS 227 214 214 HIS HIS A . n A 1 228 GLY 228 215 215 GLY GLY A . n A 1 229 MET 229 216 216 MET MET A . n A 1 230 ALA 230 217 217 ALA ALA A . n A 1 231 ALA 231 218 218 ALA ALA A . n A 1 232 SER 232 219 219 SER SER A . n A 1 233 TYR 233 220 220 TYR TYR A . n A 1 234 TYR 234 221 221 TYR TYR A . n A 1 235 THR 235 222 222 THR THR A . n A 1 236 GLY 236 223 223 GLY GLY A . n A 1 237 GLU 237 224 224 GLU GLU A . n A 1 238 ILE 238 225 225 ILE ILE A . n A 1 239 THR 239 226 226 THR THR A . n A 1 240 THR 240 227 227 THR THR A . n A 1 241 HIS 241 228 228 HIS HIS A . n A 1 242 ARG 242 229 229 ARG ARG A . n A 1 243 THR 243 230 230 THR THR A . n A 1 244 THR 244 231 231 THR THR A . n A 1 245 GLY 245 232 232 GLY GLY A . n A 1 246 THR 246 233 233 THR THR A . n A 1 247 LEU 247 234 234 LEU LEU A . n A 1 248 ALA 248 235 235 ALA ALA A . n A 1 249 ASP 249 236 236 ASP ASP A . n A 1 250 GLY 250 237 237 GLY GLY A . n A 1 251 CYS 251 238 238 CYS CYS A . n A 1 252 ASP 252 239 239 ASP ASP A . n A 1 253 VAL 253 240 240 VAL VAL A . n A 1 254 SER 254 241 241 SER SER A . n A 1 255 ARG 255 242 242 ARG ARG A . n A 1 256 PRO 256 243 243 PRO PRO A . n A 1 257 GLY 257 244 244 GLY GLY A . n A 1 258 ASN 258 245 245 ASN ASN A . n A 1 259 LEU 259 246 246 LEU LEU A . n A 1 260 THR 260 247 247 THR THR A . n A 1 261 TYR 261 248 248 TYR TYR A . n A 1 262 GLU 262 249 249 GLU GLU A . n A 1 263 ILE 263 250 250 ILE ILE A . n A 1 264 VAL 264 251 251 VAL VAL A . n A 1 265 ARG 265 252 252 ARG ARG A . n A 1 266 GLU 266 253 253 GLU GLU A . n A 1 267 LEU 267 254 254 LEU LEU A . n A 1 268 VAL 268 255 255 VAL VAL A . n A 1 269 ASP 269 256 256 ASP ASP A . n A 1 270 ASP 270 257 257 ASP ASP A . n A 1 271 ILE 271 258 258 ILE ILE A . n A 1 272 VAL 272 259 259 VAL VAL A . n A 1 273 LEU 273 260 260 LEU LEU A . n A 1 274 VAL 274 261 261 VAL VAL A . n A 1 275 SER 275 262 262 SER SER A . n A 1 276 GLU 276 263 263 GLU GLU A . n A 1 277 ASP 277 264 264 ASP ASP A . n A 1 278 GLU 278 265 265 GLU GLU A . n A 1 279 ILE 279 266 266 ILE ILE A . n A 1 280 ARG 280 267 267 ARG ARG A . n A 1 281 ASN 281 268 268 ASN ASN A . n A 1 282 SER 282 269 269 SER SER A . n A 1 283 MET 283 270 270 MET MET A . n A 1 284 ILE 284 271 271 ILE ILE A . n A 1 285 ALA 285 272 272 ALA ALA A . n A 1 286 LEU 286 273 273 LEU LEU A . n A 1 287 ILE 287 274 274 ILE ILE A . n A 1 288 GLN 288 275 275 GLN GLN A . n A 1 289 ARG 289 276 276 ARG ARG A . n A 1 290 ASN 290 277 277 ASN ASN A . n A 1 291 LYS 291 278 278 LYS LYS A . n A 1 292 VAL 292 279 279 VAL VAL A . n A 1 293 ILE 293 280 280 ILE ILE A . n A 1 294 THR 294 281 281 THR THR A . n A 1 295 GLU 295 282 282 GLU GLU A . n A 1 296 GLY 296 283 283 GLY GLY A . n A 1 297 ALA 297 284 284 ALA ALA A . n A 1 298 GLY 298 285 285 GLY GLY A . n A 1 299 ALA 299 286 286 ALA ALA A . n A 1 300 LEU 300 287 287 LEU LEU A . n A 1 301 ALA 301 288 288 ALA ALA A . n A 1 302 CYS 302 289 289 CYS CYS A . n A 1 303 ALA 303 290 290 ALA ALA A . n A 1 304 ALA 304 291 291 ALA ALA A . n A 1 305 LEU 305 292 292 LEU LEU A . n A 1 306 LEU 306 293 293 LEU LEU A . n A 1 307 SER 307 294 294 SER SER A . n A 1 308 GLY 308 295 295 GLY GLY A . n A 1 309 LYS 309 296 296 LYS LYS A . n A 1 310 LEU 310 297 297 LEU LEU A . n A 1 311 ASP 311 298 298 ASP ASP A . n A 1 312 SER 312 299 299 SER SER A . n A 1 313 HIS 313 300 300 HIS HIS A . n A 1 314 ILE 314 301 301 ILE ILE A . n A 1 315 GLN 315 302 302 GLN GLN A . n A 1 316 ASN 316 303 303 ASN ASN A . n A 1 317 ARG 317 304 304 ARG ARG A . n A 1 318 LYS 318 305 305 LYS LYS A . n A 1 319 THR 319 306 306 THR THR A . n A 1 320 VAL 320 307 307 VAL VAL A . n A 1 321 SER 321 308 308 SER SER A . n A 1 322 ILE 322 309 309 ILE ILE A . n A 1 323 ILE 323 310 310 ILE ILE A . n A 1 324 SER 324 311 311 SER SER A . n A 1 325 GLY 325 312 312 GLY GLY A . n A 1 326 GLY 326 313 313 GLY GLY A . n A 1 327 ASN 327 314 314 ASN ASN A . n A 1 328 ILE 328 315 315 ILE ILE A . n A 1 329 ASP 329 316 316 ASP ASP A . n A 1 330 LEU 330 317 317 LEU LEU A . n A 1 331 SER 331 318 318 SER SER A . n A 1 332 ARG 332 319 319 ARG ARG A . n A 1 333 VAL 333 320 320 VAL VAL A . n A 1 334 SER 334 321 321 SER SER A . n A 1 335 GLN 335 322 322 GLN GLN A . n A 1 336 ILE 336 323 323 ILE ILE A . n A 1 337 THR 337 324 324 THR THR A . n A 1 338 GLY 338 325 325 GLY GLY A . n A 1 339 LEU 339 326 326 LEU LEU A . n A 1 340 VAL 340 327 327 VAL VAL A . n A 1 341 ASP 341 328 328 ASP ASP A . n A 1 342 ALA 342 329 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 401 401 NA NA A . C 3 C5P 1 400 400 C5P C5P A . D 4 HOH 1 402 1 HOH HOH A . D 4 HOH 2 403 2 HOH HOH A . D 4 HOH 3 404 3 HOH HOH A . D 4 HOH 4 405 4 HOH HOH A . D 4 HOH 5 406 5 HOH HOH A . D 4 HOH 6 407 6 HOH HOH A . D 4 HOH 7 408 7 HOH HOH A . D 4 HOH 8 409 8 HOH HOH A . D 4 HOH 9 410 9 HOH HOH A . D 4 HOH 10 411 10 HOH HOH A . D 4 HOH 11 412 11 HOH HOH A . D 4 HOH 12 413 12 HOH HOH A . D 4 HOH 13 414 13 HOH HOH A . D 4 HOH 14 415 14 HOH HOH A . D 4 HOH 15 416 15 HOH HOH A . D 4 HOH 16 417 16 HOH HOH A . D 4 HOH 17 418 17 HOH HOH A . D 4 HOH 18 419 18 HOH HOH A . D 4 HOH 19 420 19 HOH HOH A . D 4 HOH 20 421 20 HOH HOH A . D 4 HOH 21 422 21 HOH HOH A . D 4 HOH 22 423 22 HOH HOH A . D 4 HOH 23 424 23 HOH HOH A . D 4 HOH 24 425 24 HOH HOH A . D 4 HOH 25 426 25 HOH HOH A . D 4 HOH 26 427 26 HOH HOH A . D 4 HOH 27 428 27 HOH HOH A . D 4 HOH 28 429 28 HOH HOH A . D 4 HOH 29 430 29 HOH HOH A . D 4 HOH 30 431 30 HOH HOH A . D 4 HOH 31 432 31 HOH HOH A . D 4 HOH 32 433 32 HOH HOH A . D 4 HOH 33 434 33 HOH HOH A . D 4 HOH 34 435 34 HOH HOH A . D 4 HOH 35 436 35 HOH HOH A . D 4 HOH 36 437 36 HOH HOH A . D 4 HOH 37 438 37 HOH HOH A . D 4 HOH 38 439 38 HOH HOH A . D 4 HOH 39 440 39 HOH HOH A . D 4 HOH 40 441 40 HOH HOH A . D 4 HOH 41 442 41 HOH HOH A . D 4 HOH 42 443 42 HOH HOH A . D 4 HOH 43 444 43 HOH HOH A . D 4 HOH 44 445 44 HOH HOH A . D 4 HOH 45 446 45 HOH HOH A . D 4 HOH 46 447 46 HOH HOH A . D 4 HOH 47 448 47 HOH HOH A . D 4 HOH 48 449 48 HOH HOH A . D 4 HOH 49 450 49 HOH HOH A . D 4 HOH 50 451 50 HOH HOH A . D 4 HOH 51 452 51 HOH HOH A . D 4 HOH 52 453 52 HOH HOH A . D 4 HOH 53 454 53 HOH HOH A . D 4 HOH 54 455 54 HOH HOH A . D 4 HOH 55 456 55 HOH HOH A . D 4 HOH 56 457 56 HOH HOH A . D 4 HOH 57 458 57 HOH HOH A . D 4 HOH 58 459 58 HOH HOH A . D 4 HOH 59 460 59 HOH HOH A . D 4 HOH 60 461 60 HOH HOH A . D 4 HOH 61 462 61 HOH HOH A . D 4 HOH 62 463 62 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id LLP _pdbx_struct_mod_residue.label_seq_id 71 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id LLP _pdbx_struct_mod_residue.auth_seq_id 58 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1.0000000000 0.0000000000 0.0000000000 -80.5725000000 0.0000000000 -1.0000000000 0.0000000000 -139.5556636928 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 7_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_445 -y-1,-x-1,-z 0.5000000000 -0.8660254038 0.0000000000 -80.5725000000 -0.8660254038 -0.5000000000 0.0000000000 -139.5556636928 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 401 ? B NA . 2 1 A HOH 462 ? D HOH . 3 1 A HOH 463 ? D HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 184 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 171 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 401 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id GLU _pdbx_struct_conn_angle.ptnr3_label_seq_id 184 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr3_auth_seq_id 171 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 4_445 _pdbx_struct_conn_angle.value 175.4 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-07 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 5 'Structure model' 1 4 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr1_symmetry' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_symmetry' 18 4 'Structure model' '_struct_ref_seq_dif.details' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 22 5 'Structure model' '_chem_comp_atom.atom_id' 23 5 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -17.6753 _pdbx_refine_tls.origin_y -70.1772 _pdbx_refine_tls.origin_z -20.1978 _pdbx_refine_tls.T[1][1] -0.1911 _pdbx_refine_tls.T[2][2] -0.0229 _pdbx_refine_tls.T[3][3] -0.1280 _pdbx_refine_tls.T[1][2] 0.1489 _pdbx_refine_tls.T[1][3] -0.0612 _pdbx_refine_tls.T[2][3] -0.0999 _pdbx_refine_tls.L[1][1] 2.9715 _pdbx_refine_tls.L[2][2] 2.0612 _pdbx_refine_tls.L[3][3] 2.0035 _pdbx_refine_tls.L[1][2] -0.0306 _pdbx_refine_tls.L[1][3] -0.2122 _pdbx_refine_tls.L[2][3] 0.1766 _pdbx_refine_tls.S[1][1] -0.0438 _pdbx_refine_tls.S[1][2] -0.5148 _pdbx_refine_tls.S[1][3] 0.3265 _pdbx_refine_tls.S[2][1] 0.2732 _pdbx_refine_tls.S[2][2] 0.2005 _pdbx_refine_tls.S[2][3] -0.3553 _pdbx_refine_tls.S[3][1] -0.1522 _pdbx_refine_tls.S[3][2] 0.1058 _pdbx_refine_tls.S[3][3] -0.1567 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 3 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 16 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 328 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 341 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0009 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 24 ? ? -130.36 -58.70 2 1 THR A 54 ? ? 76.41 -8.19 3 1 SER A 121 ? ? 106.88 -24.21 4 1 TYR A 153 ? ? -151.62 -31.06 5 1 LEU A 173 ? ? -151.58 84.03 6 1 HIS A 214 ? ? -156.83 62.42 7 1 ARG A 229 ? ? -160.35 108.57 8 1 VAL A 327 ? ? -56.05 74.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 3 ? CG1 ? A ILE 16 CG1 2 1 Y 1 A ILE 3 ? CG2 ? A ILE 16 CG2 3 1 Y 1 A ILE 3 ? CD1 ? A ILE 16 CD1 4 1 Y 1 A TYR 5 ? CG ? A TYR 18 CG 5 1 Y 1 A TYR 5 ? CD1 ? A TYR 18 CD1 6 1 Y 1 A TYR 5 ? CD2 ? A TYR 18 CD2 7 1 Y 1 A TYR 5 ? CE1 ? A TYR 18 CE1 8 1 Y 1 A TYR 5 ? CE2 ? A TYR 18 CE2 9 1 Y 1 A TYR 5 ? CZ ? A TYR 18 CZ 10 1 Y 1 A TYR 5 ? OH ? A TYR 18 OH 11 1 Y 1 A LYS 111 ? CE ? A LYS 124 CE 12 1 Y 1 A LYS 111 ? NZ ? A LYS 124 NZ 13 1 Y 1 A ILE 135 ? CG1 ? A ILE 148 CG1 14 1 Y 1 A ILE 135 ? CG2 ? A ILE 148 CG2 15 1 Y 1 A ILE 135 ? CD1 ? A ILE 148 CD1 16 1 Y 1 A VAL 327 ? CG1 ? A VAL 340 CG1 17 1 Y 1 A VAL 327 ? CG2 ? A VAL 340 CG2 18 1 Y 1 A ASP 328 ? CG ? A ASP 341 CG 19 1 Y 1 A ASP 328 ? OD1 ? A ASP 341 OD1 20 1 Y 1 A ASP 328 ? OD2 ? A ASP 341 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -12 ? A MET 1 2 1 Y 1 A ARG -11 ? A ARG 2 3 1 Y 1 A GLY -10 ? A GLY 3 4 1 Y 1 A SER -9 ? A SER 4 5 1 Y 1 A HIS -8 ? A HIS 5 6 1 Y 1 A HIS -7 ? A HIS 6 7 1 Y 1 A HIS -6 ? A HIS 7 8 1 Y 1 A HIS -5 ? A HIS 8 9 1 Y 1 A HIS -4 ? A HIS 9 10 1 Y 1 A HIS -3 ? A HIS 10 11 1 Y 1 A GLY -2 ? A GLY 11 12 1 Y 1 A MET -1 ? A MET 12 13 1 Y 1 A ALA 0 ? A ALA 13 14 1 Y 1 A SER 1 ? A SER 14 15 1 Y 1 A HIS 2 ? A HIS 15 16 1 Y 1 A ALA 329 ? A ALA 342 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C5P O3P O N N 74 C5P P P N N 75 C5P O1P O N N 76 C5P O2P O N N 77 C5P "O5'" O N N 78 C5P "C5'" C N N 79 C5P "C4'" C N R 80 C5P "O4'" O N N 81 C5P "C3'" C N S 82 C5P "O3'" O N N 83 C5P "C2'" C N R 84 C5P "O2'" O N N 85 C5P "C1'" C N R 86 C5P N1 N N N 87 C5P C2 C N N 88 C5P N3 N N N 89 C5P C4 C N N 90 C5P C5 C N N 91 C5P C6 C N N 92 C5P O2 O N N 93 C5P N4 N N N 94 C5P HOP3 H N N 95 C5P HOP2 H N N 96 C5P "H5'1" H N N 97 C5P "H5'2" H N N 98 C5P "H4'" H N N 99 C5P "H3'" H N N 100 C5P "HO3'" H N N 101 C5P "H2'1" H N N 102 C5P "HO2'" H N N 103 C5P "H1'" H N N 104 C5P H5 H N N 105 C5P H6 H N N 106 C5P HN41 H N N 107 C5P HN42 H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 GLN N N N N 123 GLN CA C N S 124 GLN C C N N 125 GLN O O N N 126 GLN CB C N N 127 GLN CG C N N 128 GLN CD C N N 129 GLN OE1 O N N 130 GLN NE2 N N N 131 GLN OXT O N N 132 GLN H H N N 133 GLN H2 H N N 134 GLN HA H N N 135 GLN HB2 H N N 136 GLN HB3 H N N 137 GLN HG2 H N N 138 GLN HG3 H N N 139 GLN HE21 H N N 140 GLN HE22 H N N 141 GLN HXT H N N 142 GLU N N N N 143 GLU CA C N S 144 GLU C C N N 145 GLU O O N N 146 GLU CB C N N 147 GLU CG C N N 148 GLU CD C N N 149 GLU OE1 O N N 150 GLU OE2 O N N 151 GLU OXT O N N 152 GLU H H N N 153 GLU H2 H N N 154 GLU HA H N N 155 GLU HB2 H N N 156 GLU HB3 H N N 157 GLU HG2 H N N 158 GLU HG3 H N N 159 GLU HE2 H N N 160 GLU HXT H N N 161 GLY N N N N 162 GLY CA C N N 163 GLY C C N N 164 GLY O O N N 165 GLY OXT O N N 166 GLY H H N N 167 GLY H2 H N N 168 GLY HA2 H N N 169 GLY HA3 H N N 170 GLY HXT H N N 171 HIS N N N N 172 HIS CA C N S 173 HIS C C N N 174 HIS O O N N 175 HIS CB C N N 176 HIS CG C Y N 177 HIS ND1 N Y N 178 HIS CD2 C Y N 179 HIS CE1 C Y N 180 HIS NE2 N Y N 181 HIS OXT O N N 182 HIS H H N N 183 HIS H2 H N N 184 HIS HA H N N 185 HIS HB2 H N N 186 HIS HB3 H N N 187 HIS HD1 H N N 188 HIS HD2 H N N 189 HIS HE1 H N N 190 HIS HE2 H N N 191 HIS HXT H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 ILE N N N N 196 ILE CA C N S 197 ILE C C N N 198 ILE O O N N 199 ILE CB C N S 200 ILE CG1 C N N 201 ILE CG2 C N N 202 ILE CD1 C N N 203 ILE OXT O N N 204 ILE H H N N 205 ILE H2 H N N 206 ILE HA H N N 207 ILE HB H N N 208 ILE HG12 H N N 209 ILE HG13 H N N 210 ILE HG21 H N N 211 ILE HG22 H N N 212 ILE HG23 H N N 213 ILE HD11 H N N 214 ILE HD12 H N N 215 ILE HD13 H N N 216 ILE HXT H N N 217 LEU N N N N 218 LEU CA C N S 219 LEU C C N N 220 LEU O O N N 221 LEU CB C N N 222 LEU CG C N N 223 LEU CD1 C N N 224 LEU CD2 C N N 225 LEU OXT O N N 226 LEU H H N N 227 LEU H2 H N N 228 LEU HA H N N 229 LEU HB2 H N N 230 LEU HB3 H N N 231 LEU HG H N N 232 LEU HD11 H N N 233 LEU HD12 H N N 234 LEU HD13 H N N 235 LEU HD21 H N N 236 LEU HD22 H N N 237 LEU HD23 H N N 238 LEU HXT H N N 239 LLP N1 N Y N 240 LLP C2 C Y N 241 LLP "C2'" C N N 242 LLP C3 C Y N 243 LLP O3 O N N 244 LLP C4 C Y N 245 LLP "C4'" C N N 246 LLP C5 C Y N 247 LLP C6 C Y N 248 LLP "C5'" C N N 249 LLP OP4 O N N 250 LLP P P N N 251 LLP OP1 O N N 252 LLP OP2 O N N 253 LLP OP3 O N N 254 LLP N N N N 255 LLP CA C N S 256 LLP CB C N N 257 LLP CG C N N 258 LLP CD C N N 259 LLP CE C N N 260 LLP NZ N N N 261 LLP C C N N 262 LLP O O N N 263 LLP OXT O N N 264 LLP "H2'1" H N N 265 LLP "H2'2" H N N 266 LLP "H2'3" H N N 267 LLP HO3 H N N 268 LLP "H4'1" H N N 269 LLP H6 H N N 270 LLP "H5'1" H N N 271 LLP "H5'2" H N N 272 LLP HOP2 H N N 273 LLP HOP3 H N N 274 LLP H H N N 275 LLP H2 H N N 276 LLP HA H N N 277 LLP HB2 H N N 278 LLP HB3 H N N 279 LLP HG2 H N N 280 LLP HG3 H N N 281 LLP HD2 H N N 282 LLP HD3 H N N 283 LLP HE2 H N N 284 LLP HE3 H N N 285 LLP HXT H N N 286 LYS N N N N 287 LYS CA C N S 288 LYS C C N N 289 LYS O O N N 290 LYS CB C N N 291 LYS CG C N N 292 LYS CD C N N 293 LYS CE C N N 294 LYS NZ N N N 295 LYS OXT O N N 296 LYS H H N N 297 LYS H2 H N N 298 LYS HA H N N 299 LYS HB2 H N N 300 LYS HB3 H N N 301 LYS HG2 H N N 302 LYS HG3 H N N 303 LYS HD2 H N N 304 LYS HD3 H N N 305 LYS HE2 H N N 306 LYS HE3 H N N 307 LYS HZ1 H N N 308 LYS HZ2 H N N 309 LYS HZ3 H N N 310 LYS HXT H N N 311 MET N N N N 312 MET CA C N S 313 MET C C N N 314 MET O O N N 315 MET CB C N N 316 MET CG C N N 317 MET SD S N N 318 MET CE C N N 319 MET OXT O N N 320 MET H H N N 321 MET H2 H N N 322 MET HA H N N 323 MET HB2 H N N 324 MET HB3 H N N 325 MET HG2 H N N 326 MET HG3 H N N 327 MET HE1 H N N 328 MET HE2 H N N 329 MET HE3 H N N 330 MET HXT H N N 331 NA NA NA N N 332 PHE N N N N 333 PHE CA C N S 334 PHE C C N N 335 PHE O O N N 336 PHE CB C N N 337 PHE CG C Y N 338 PHE CD1 C Y N 339 PHE CD2 C Y N 340 PHE CE1 C Y N 341 PHE CE2 C Y N 342 PHE CZ C Y N 343 PHE OXT O N N 344 PHE H H N N 345 PHE H2 H N N 346 PHE HA H N N 347 PHE HB2 H N N 348 PHE HB3 H N N 349 PHE HD1 H N N 350 PHE HD2 H N N 351 PHE HE1 H N N 352 PHE HE2 H N N 353 PHE HZ H N N 354 PHE HXT H N N 355 PRO N N N N 356 PRO CA C N S 357 PRO C C N N 358 PRO O O N N 359 PRO CB C N N 360 PRO CG C N N 361 PRO CD C N N 362 PRO OXT O N N 363 PRO H H N N 364 PRO HA H N N 365 PRO HB2 H N N 366 PRO HB3 H N N 367 PRO HG2 H N N 368 PRO HG3 H N N 369 PRO HD2 H N N 370 PRO HD3 H N N 371 PRO HXT H N N 372 SER N N N N 373 SER CA C N S 374 SER C C N N 375 SER O O N N 376 SER CB C N N 377 SER OG O N N 378 SER OXT O N N 379 SER H H N N 380 SER H2 H N N 381 SER HA H N N 382 SER HB2 H N N 383 SER HB3 H N N 384 SER HG H N N 385 SER HXT H N N 386 THR N N N N 387 THR CA C N S 388 THR C C N N 389 THR O O N N 390 THR CB C N R 391 THR OG1 O N N 392 THR CG2 C N N 393 THR OXT O N N 394 THR H H N N 395 THR H2 H N N 396 THR HA H N N 397 THR HB H N N 398 THR HG1 H N N 399 THR HG21 H N N 400 THR HG22 H N N 401 THR HG23 H N N 402 THR HXT H N N 403 TYR N N N N 404 TYR CA C N S 405 TYR C C N N 406 TYR O O N N 407 TYR CB C N N 408 TYR CG C Y N 409 TYR CD1 C Y N 410 TYR CD2 C Y N 411 TYR CE1 C Y N 412 TYR CE2 C Y N 413 TYR CZ C Y N 414 TYR OH O N N 415 TYR OXT O N N 416 TYR H H N N 417 TYR H2 H N N 418 TYR HA H N N 419 TYR HB2 H N N 420 TYR HB3 H N N 421 TYR HD1 H N N 422 TYR HD2 H N N 423 TYR HE1 H N N 424 TYR HE2 H N N 425 TYR HH H N N 426 TYR HXT H N N 427 VAL N N N N 428 VAL CA C N S 429 VAL C C N N 430 VAL O O N N 431 VAL CB C N N 432 VAL CG1 C N N 433 VAL CG2 C N N 434 VAL OXT O N N 435 VAL H H N N 436 VAL H2 H N N 437 VAL HA H N N 438 VAL HB H N N 439 VAL HG11 H N N 440 VAL HG12 H N N 441 VAL HG13 H N N 442 VAL HG21 H N N 443 VAL HG22 H N N 444 VAL HG23 H N N 445 VAL HXT H N N 446 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C5P O3P P sing N N 70 C5P O3P HOP3 sing N N 71 C5P P O1P doub N N 72 C5P P O2P sing N N 73 C5P P "O5'" sing N N 74 C5P O2P HOP2 sing N N 75 C5P "O5'" "C5'" sing N N 76 C5P "C5'" "C4'" sing N N 77 C5P "C5'" "H5'1" sing N N 78 C5P "C5'" "H5'2" sing N N 79 C5P "C4'" "O4'" sing N N 80 C5P "C4'" "C3'" sing N N 81 C5P "C4'" "H4'" sing N N 82 C5P "O4'" "C1'" sing N N 83 C5P "C3'" "O3'" sing N N 84 C5P "C3'" "C2'" sing N N 85 C5P "C3'" "H3'" sing N N 86 C5P "O3'" "HO3'" sing N N 87 C5P "C2'" "O2'" sing N N 88 C5P "C2'" "C1'" sing N N 89 C5P "C2'" "H2'1" sing N N 90 C5P "O2'" "HO2'" sing N N 91 C5P "C1'" N1 sing N N 92 C5P "C1'" "H1'" sing N N 93 C5P N1 C2 sing N N 94 C5P N1 C6 sing N N 95 C5P C2 N3 sing N N 96 C5P C2 O2 doub N N 97 C5P N3 C4 doub N N 98 C5P C4 C5 sing N N 99 C5P C4 N4 sing N N 100 C5P C5 C6 doub N N 101 C5P C5 H5 sing N N 102 C5P C6 H6 sing N N 103 C5P N4 HN41 sing N N 104 C5P N4 HN42 sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 GLN N CA sing N N 119 GLN N H sing N N 120 GLN N H2 sing N N 121 GLN CA C sing N N 122 GLN CA CB sing N N 123 GLN CA HA sing N N 124 GLN C O doub N N 125 GLN C OXT sing N N 126 GLN CB CG sing N N 127 GLN CB HB2 sing N N 128 GLN CB HB3 sing N N 129 GLN CG CD sing N N 130 GLN CG HG2 sing N N 131 GLN CG HG3 sing N N 132 GLN CD OE1 doub N N 133 GLN CD NE2 sing N N 134 GLN NE2 HE21 sing N N 135 GLN NE2 HE22 sing N N 136 GLN OXT HXT sing N N 137 GLU N CA sing N N 138 GLU N H sing N N 139 GLU N H2 sing N N 140 GLU CA C sing N N 141 GLU CA CB sing N N 142 GLU CA HA sing N N 143 GLU C O doub N N 144 GLU C OXT sing N N 145 GLU CB CG sing N N 146 GLU CB HB2 sing N N 147 GLU CB HB3 sing N N 148 GLU CG CD sing N N 149 GLU CG HG2 sing N N 150 GLU CG HG3 sing N N 151 GLU CD OE1 doub N N 152 GLU CD OE2 sing N N 153 GLU OE2 HE2 sing N N 154 GLU OXT HXT sing N N 155 GLY N CA sing N N 156 GLY N H sing N N 157 GLY N H2 sing N N 158 GLY CA C sing N N 159 GLY CA HA2 sing N N 160 GLY CA HA3 sing N N 161 GLY C O doub N N 162 GLY C OXT sing N N 163 GLY OXT HXT sing N N 164 HIS N CA sing N N 165 HIS N H sing N N 166 HIS N H2 sing N N 167 HIS CA C sing N N 168 HIS CA CB sing N N 169 HIS CA HA sing N N 170 HIS C O doub N N 171 HIS C OXT sing N N 172 HIS CB CG sing N N 173 HIS CB HB2 sing N N 174 HIS CB HB3 sing N N 175 HIS CG ND1 sing Y N 176 HIS CG CD2 doub Y N 177 HIS ND1 CE1 doub Y N 178 HIS ND1 HD1 sing N N 179 HIS CD2 NE2 sing Y N 180 HIS CD2 HD2 sing N N 181 HIS CE1 NE2 sing Y N 182 HIS CE1 HE1 sing N N 183 HIS NE2 HE2 sing N N 184 HIS OXT HXT sing N N 185 HOH O H1 sing N N 186 HOH O H2 sing N N 187 ILE N CA sing N N 188 ILE N H sing N N 189 ILE N H2 sing N N 190 ILE CA C sing N N 191 ILE CA CB sing N N 192 ILE CA HA sing N N 193 ILE C O doub N N 194 ILE C OXT sing N N 195 ILE CB CG1 sing N N 196 ILE CB CG2 sing N N 197 ILE CB HB sing N N 198 ILE CG1 CD1 sing N N 199 ILE CG1 HG12 sing N N 200 ILE CG1 HG13 sing N N 201 ILE CG2 HG21 sing N N 202 ILE CG2 HG22 sing N N 203 ILE CG2 HG23 sing N N 204 ILE CD1 HD11 sing N N 205 ILE CD1 HD12 sing N N 206 ILE CD1 HD13 sing N N 207 ILE OXT HXT sing N N 208 LEU N CA sing N N 209 LEU N H sing N N 210 LEU N H2 sing N N 211 LEU CA C sing N N 212 LEU CA CB sing N N 213 LEU CA HA sing N N 214 LEU C O doub N N 215 LEU C OXT sing N N 216 LEU CB CG sing N N 217 LEU CB HB2 sing N N 218 LEU CB HB3 sing N N 219 LEU CG CD1 sing N N 220 LEU CG CD2 sing N N 221 LEU CG HG sing N N 222 LEU CD1 HD11 sing N N 223 LEU CD1 HD12 sing N N 224 LEU CD1 HD13 sing N N 225 LEU CD2 HD21 sing N N 226 LEU CD2 HD22 sing N N 227 LEU CD2 HD23 sing N N 228 LEU OXT HXT sing N N 229 LLP N1 C2 doub Y N 230 LLP N1 C6 sing Y N 231 LLP C2 "C2'" sing N N 232 LLP C2 C3 sing Y N 233 LLP C3 O3 sing N N 234 LLP C3 C4 doub Y N 235 LLP C4 "C4'" sing N N 236 LLP C4 C5 sing Y N 237 LLP "C4'" NZ doub N N 238 LLP C5 C6 doub Y N 239 LLP C5 "C5'" sing N N 240 LLP "C5'" OP4 sing N N 241 LLP OP4 P sing N N 242 LLP P OP1 doub N N 243 LLP P OP2 sing N N 244 LLP P OP3 sing N N 245 LLP N CA sing N N 246 LLP CA CB sing N N 247 LLP CA C sing N N 248 LLP CB CG sing N N 249 LLP CG CD sing N N 250 LLP CD CE sing N N 251 LLP CE NZ sing N N 252 LLP C O doub N N 253 LLP C OXT sing N N 254 LLP "C2'" "H2'1" sing N N 255 LLP "C2'" "H2'2" sing N N 256 LLP "C2'" "H2'3" sing N N 257 LLP O3 HO3 sing N N 258 LLP "C4'" "H4'1" sing N N 259 LLP C6 H6 sing N N 260 LLP "C5'" "H5'1" sing N N 261 LLP "C5'" "H5'2" sing N N 262 LLP OP2 HOP2 sing N N 263 LLP OP3 HOP3 sing N N 264 LLP N H sing N N 265 LLP N H2 sing N N 266 LLP CA HA sing N N 267 LLP CB HB2 sing N N 268 LLP CB HB3 sing N N 269 LLP CG HG2 sing N N 270 LLP CG HG3 sing N N 271 LLP CD HD2 sing N N 272 LLP CD HD3 sing N N 273 LLP CE HE2 sing N N 274 LLP CE HE3 sing N N 275 LLP OXT HXT sing N N 276 LYS N CA sing N N 277 LYS N H sing N N 278 LYS N H2 sing N N 279 LYS CA C sing N N 280 LYS CA CB sing N N 281 LYS CA HA sing N N 282 LYS C O doub N N 283 LYS C OXT sing N N 284 LYS CB CG sing N N 285 LYS CB HB2 sing N N 286 LYS CB HB3 sing N N 287 LYS CG CD sing N N 288 LYS CG HG2 sing N N 289 LYS CG HG3 sing N N 290 LYS CD CE sing N N 291 LYS CD HD2 sing N N 292 LYS CD HD3 sing N N 293 LYS CE NZ sing N N 294 LYS CE HE2 sing N N 295 LYS CE HE3 sing N N 296 LYS NZ HZ1 sing N N 297 LYS NZ HZ2 sing N N 298 LYS NZ HZ3 sing N N 299 LYS OXT HXT sing N N 300 MET N CA sing N N 301 MET N H sing N N 302 MET N H2 sing N N 303 MET CA C sing N N 304 MET CA CB sing N N 305 MET CA HA sing N N 306 MET C O doub N N 307 MET C OXT sing N N 308 MET CB CG sing N N 309 MET CB HB2 sing N N 310 MET CB HB3 sing N N 311 MET CG SD sing N N 312 MET CG HG2 sing N N 313 MET CG HG3 sing N N 314 MET SD CE sing N N 315 MET CE HE1 sing N N 316 MET CE HE2 sing N N 317 MET CE HE3 sing N N 318 MET OXT HXT sing N N 319 PHE N CA sing N N 320 PHE N H sing N N 321 PHE N H2 sing N N 322 PHE CA C sing N N 323 PHE CA CB sing N N 324 PHE CA HA sing N N 325 PHE C O doub N N 326 PHE C OXT sing N N 327 PHE CB CG sing N N 328 PHE CB HB2 sing N N 329 PHE CB HB3 sing N N 330 PHE CG CD1 doub Y N 331 PHE CG CD2 sing Y N 332 PHE CD1 CE1 sing Y N 333 PHE CD1 HD1 sing N N 334 PHE CD2 CE2 doub Y N 335 PHE CD2 HD2 sing N N 336 PHE CE1 CZ doub Y N 337 PHE CE1 HE1 sing N N 338 PHE CE2 CZ sing Y N 339 PHE CE2 HE2 sing N N 340 PHE CZ HZ sing N N 341 PHE OXT HXT sing N N 342 PRO N CA sing N N 343 PRO N CD sing N N 344 PRO N H sing N N 345 PRO CA C sing N N 346 PRO CA CB sing N N 347 PRO CA HA sing N N 348 PRO C O doub N N 349 PRO C OXT sing N N 350 PRO CB CG sing N N 351 PRO CB HB2 sing N N 352 PRO CB HB3 sing N N 353 PRO CG CD sing N N 354 PRO CG HG2 sing N N 355 PRO CG HG3 sing N N 356 PRO CD HD2 sing N N 357 PRO CD HD3 sing N N 358 PRO OXT HXT sing N N 359 SER N CA sing N N 360 SER N H sing N N 361 SER N H2 sing N N 362 SER CA C sing N N 363 SER CA CB sing N N 364 SER CA HA sing N N 365 SER C O doub N N 366 SER C OXT sing N N 367 SER CB OG sing N N 368 SER CB HB2 sing N N 369 SER CB HB3 sing N N 370 SER OG HG sing N N 371 SER OXT HXT sing N N 372 THR N CA sing N N 373 THR N H sing N N 374 THR N H2 sing N N 375 THR CA C sing N N 376 THR CA CB sing N N 377 THR CA HA sing N N 378 THR C O doub N N 379 THR C OXT sing N N 380 THR CB OG1 sing N N 381 THR CB CG2 sing N N 382 THR CB HB sing N N 383 THR OG1 HG1 sing N N 384 THR CG2 HG21 sing N N 385 THR CG2 HG22 sing N N 386 THR CG2 HG23 sing N N 387 THR OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 VAL N CA sing N N 413 VAL N H sing N N 414 VAL N H2 sing N N 415 VAL CA C sing N N 416 VAL CA CB sing N N 417 VAL CA HA sing N N 418 VAL C O doub N N 419 VAL C OXT sing N N 420 VAL CB CG1 sing N N 421 VAL CB CG2 sing N N 422 VAL CB HB sing N N 423 VAL CG1 HG11 sing N N 424 VAL CG1 HG12 sing N N 425 VAL CG1 HG13 sing N N 426 VAL CG2 HG21 sing N N 427 VAL CG2 HG22 sing N N 428 VAL CG2 HG23 sing N N 429 VAL OXT HXT sing N N 430 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 "CYTIDINE-5'-MONOPHOSPHATE" C5P 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GN0 _pdbx_initial_refinement_model.details 'BIODEGRADATIVE THREONINE DEAMINASE FROM SALMONELLA TYPHIMURIUM (PDB CODE 1GN0)' #