HEADER LYASE 09-APR-06 2GN9 TITLE CRYSTAL STRUCTURE OF UDP-GLCNAC INVERTING 4,6-DEHYDRATASE IN COMPLEX TITLE 2 WITH NADP AND UDP-GLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLCNAC C6 DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FLAA1 PROTEIN; COMPND 5 EC: 4.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: HP0840; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23 DERIVATIVE KEYWDS ROSSMANN FOLD, TYK TRIAD, SDR, ENZYME, DEHYDRATASE, UDP-GLCNAC, NADP, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ISHIYAMA,C.CREUZENET,J.S.LAM,A.M.BERGHUIS REVDAT 6 30-AUG-23 2GN9 1 REMARK SEQADV REVDAT 5 18-OCT-17 2GN9 1 REMARK REVDAT 4 13-JUL-11 2GN9 1 VERSN REVDAT 3 24-FEB-09 2GN9 1 VERSN REVDAT 2 05-SEP-06 2GN9 1 JRNL REVDAT 1 09-MAY-06 2GN9 0 JRNL AUTH N.ISHIYAMA,C.CREUZENET,W.L.MILLER,M.DEMENDI,E.M.ANDERSON, JRNL AUTH 2 G.HARAUZ,J.S.LAM,A.M.BERGHUIS JRNL TITL STRUCTURAL STUDIES OF FLAA1 FROM HELICOBACTER PYLORI REVEAL JRNL TITL 2 THE MECHANISM FOR INVERTING 4,6-DEHYDRATASE ACTIVITY. JRNL REF J.BIOL.CHEM. V. 281 24489 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16651261 JRNL DOI 10.1074/JBC.M602393200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 18312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 36 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 322 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.55100 REMARK 3 B22 (A**2) : -11.55100 REMARK 3 B33 (A**2) : 23.10200 REMARK 3 B12 (A**2) : -17.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.471 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.325 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.422 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.104 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 54.11 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NAP_NI.PAR REMARK 3 PARAMETER FILE 3 : UPG_NI.PAR REMARK 3 PARAMETER FILE 4 : MES_NI.PAR REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1SB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (V/V) PEG-200, 100 MM MES, 5% REMARK 280 (V/W) PEG-3000, 4% (V/V) ACETONE, PH 6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.67450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.67450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.67450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE TWO REMARK 300 PROTOMERS IN THE ASYMMETRIC UNIT BY THE OPERATIONS:(-Y,X-Y,Z) AND (- REMARK 300 X+Y,-X,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.18800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.32047 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -56.18800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 97.32047 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.18800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.32047 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 4 REMARK 465 MET B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ASN B 3 REMARK 465 HIS B 4 REMARK 465 GLN B 5 REMARK 465 ASN B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 40.02 -109.00 REMARK 500 ASN A 10 56.50 35.55 REMARK 500 SER A 21 -80.83 -43.96 REMARK 500 ASN A 35 79.06 -112.01 REMARK 500 ALA A 89 163.56 175.34 REMARK 500 ILE A 138 -18.75 -149.05 REMARK 500 PHE A 158 125.90 -32.75 REMARK 500 SER A 161 20.52 -61.12 REMARK 500 VAL A 175 91.40 -32.91 REMARK 500 ARG A 178 99.13 -34.71 REMARK 500 SER A 180 -93.92 -129.38 REMARK 500 VAL A 181 -38.93 -150.95 REMARK 500 LYS A 187 -33.60 -31.30 REMARK 500 ASN A 191 -58.84 -165.60 REMARK 500 LYS A 192 57.57 -148.83 REMARK 500 ALA A 193 94.85 -48.21 REMARK 500 SER A 194 2.28 -162.61 REMARK 500 MET A 203 107.27 -51.82 REMARK 500 LEU A 210 -1.40 -56.04 REMARK 500 LEU A 246 24.02 -76.31 REMARK 500 ALA A 247 92.22 167.82 REMARK 500 ILE A 255 -91.93 -66.01 REMARK 500 LYS A 262 -172.61 -62.70 REMARK 500 HIS A 274 -3.66 -59.20 REMARK 500 HIS A 303 -20.17 77.39 REMARK 500 LYS A 308 -159.36 -62.79 REMARK 500 PRO A 311 70.47 -61.22 REMARK 500 ASP A 312 -18.89 171.32 REMARK 500 TYR A 315 91.49 -58.57 REMARK 500 PRO A 326 19.98 -58.29 REMARK 500 LYS A 331 36.72 -82.49 REMARK 500 LEU A 332 -62.95 -150.85 REMARK 500 ARG B 62 122.09 -178.34 REMARK 500 ALA B 89 162.49 167.25 REMARK 500 SER B 130 -150.36 -95.69 REMARK 500 SER B 161 2.73 -61.68 REMARK 500 VAL B 175 109.36 -31.75 REMARK 500 ARG B 178 94.53 -41.09 REMARK 500 SER B 180 -150.06 -119.94 REMARK 500 VAL B 181 -69.45 -96.85 REMARK 500 PHE B 185 28.48 -76.93 REMARK 500 LYS B 186 -42.33 -140.26 REMARK 500 ASN B 191 38.01 -92.60 REMARK 500 LYS B 192 79.05 57.42 REMARK 500 MET B 203 88.67 -56.79 REMARK 500 MET B 224 137.91 -34.05 REMARK 500 LYS B 244 -90.94 -54.93 REMARK 500 ALA B 245 -73.49 -18.81 REMARK 500 LEU B 246 -37.71 -33.22 REMARK 500 ALA B 247 76.71 165.97 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 UPG A 335 REMARK 615 UPG B 335 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG B 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 336 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GN4 RELATED DB: PDB REMARK 900 RELATED ID: 2GN6 RELATED DB: PDB REMARK 900 RELATED ID: 2GN8 RELATED DB: PDB REMARK 900 RELATED ID: 2GNA RELATED DB: PDB DBREF 2GN9 A 1 333 UNP O25511 O25511_HELPY 1 333 DBREF 2GN9 B 1 333 UNP O25511 O25511_HELPY 1 333 SEQADV 2GN9 MET A -10 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 HIS A -9 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS A -8 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS A -7 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS A -6 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS A -5 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS A -4 UNP O25511 EXPRESSION TAG SEQADV 2GN9 GLY A -3 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 SER A -2 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 MET A -1 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 SER A 0 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 MET B -10 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 HIS B -9 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS B -8 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS B -7 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS B -6 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS B -5 UNP O25511 EXPRESSION TAG SEQADV 2GN9 HIS B -4 UNP O25511 EXPRESSION TAG SEQADV 2GN9 GLY B -3 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 SER B -2 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 MET B -1 UNP O25511 CLONING ARTIFACT SEQADV 2GN9 SER B 0 UNP O25511 CLONING ARTIFACT SEQRES 1 A 344 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER MET PRO SEQRES 2 A 344 ASN HIS GLN ASN MET LEU ASP ASN GLN THR ILE LEU ILE SEQRES 3 A 344 THR GLY GLY THR GLY SER PHE GLY LYS CYS PHE VAL ARG SEQRES 4 A 344 LYS VAL LEU ASP THR THR ASN ALA LYS LYS ILE ILE VAL SEQRES 5 A 344 TYR SER ARG ASP GLU LEU LYS GLN SER GLU MET ALA MET SEQRES 6 A 344 GLU PHE ASN ASP PRO ARG MET ARG PHE PHE ILE GLY ASP SEQRES 7 A 344 VAL ARG ASP LEU GLU ARG LEU ASN TYR ALA LEU GLU GLY SEQRES 8 A 344 VAL ASP ILE CYS ILE HIS ALA ALA ALA LEU LYS HIS VAL SEQRES 9 A 344 PRO ILE ALA GLU TYR ASN PRO LEU GLU CYS ILE LYS THR SEQRES 10 A 344 ASN ILE MET GLY ALA SER ASN VAL ILE ASN ALA CYS LEU SEQRES 11 A 344 LYS ASN ALA ILE SER GLN VAL ILE ALA LEU SER THR ASP SEQRES 12 A 344 LYS ALA ALA ASN PRO ILE ASN LEU TYR GLY ALA THR LYS SEQRES 13 A 344 LEU CYS SER ASP LYS LEU PHE VAL SER ALA ASN ASN PHE SEQRES 14 A 344 LYS GLY SER SER GLN THR GLN PHE SER VAL VAL ARG TYR SEQRES 15 A 344 GLY ASN VAL VAL GLY SER ARG GLY SER VAL VAL PRO PHE SEQRES 16 A 344 PHE LYS LYS LEU VAL GLN ASN LYS ALA SER GLU ILE PRO SEQRES 17 A 344 ILE THR ASP ILE ARG MET THR ARG PHE TRP ILE THR LEU SEQRES 18 A 344 ASP GLU GLY VAL SER PHE VAL LEU LYS SER LEU LYS ARG SEQRES 19 A 344 MET HIS GLY GLY GLU ILE PHE VAL PRO LYS ILE PRO SER SEQRES 20 A 344 MET LYS MET THR ASP LEU ALA LYS ALA LEU ALA PRO ASN SEQRES 21 A 344 THR PRO THR LYS ILE ILE GLY ILE ARG PRO GLY GLU LYS SEQRES 22 A 344 LEU HIS GLU VAL MET ILE PRO LYS ASP GLU SER HIS LEU SEQRES 23 A 344 ALA LEU GLU PHE GLU ASP PHE PHE ILE ILE GLN PRO THR SEQRES 24 A 344 ILE SER PHE GLN THR PRO LYS ASP TYR THR LEU THR LYS SEQRES 25 A 344 LEU HIS GLU LYS GLY GLN LYS VAL ALA PRO ASP PHE GLU SEQRES 26 A 344 TYR SER SER HIS ASN ASN ASN GLN TRP LEU GLU PRO ASP SEQRES 27 A 344 ASP LEU LEU LYS LEU LEU SEQRES 1 B 344 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER MET PRO SEQRES 2 B 344 ASN HIS GLN ASN MET LEU ASP ASN GLN THR ILE LEU ILE SEQRES 3 B 344 THR GLY GLY THR GLY SER PHE GLY LYS CYS PHE VAL ARG SEQRES 4 B 344 LYS VAL LEU ASP THR THR ASN ALA LYS LYS ILE ILE VAL SEQRES 5 B 344 TYR SER ARG ASP GLU LEU LYS GLN SER GLU MET ALA MET SEQRES 6 B 344 GLU PHE ASN ASP PRO ARG MET ARG PHE PHE ILE GLY ASP SEQRES 7 B 344 VAL ARG ASP LEU GLU ARG LEU ASN TYR ALA LEU GLU GLY SEQRES 8 B 344 VAL ASP ILE CYS ILE HIS ALA ALA ALA LEU LYS HIS VAL SEQRES 9 B 344 PRO ILE ALA GLU TYR ASN PRO LEU GLU CYS ILE LYS THR SEQRES 10 B 344 ASN ILE MET GLY ALA SER ASN VAL ILE ASN ALA CYS LEU SEQRES 11 B 344 LYS ASN ALA ILE SER GLN VAL ILE ALA LEU SER THR ASP SEQRES 12 B 344 LYS ALA ALA ASN PRO ILE ASN LEU TYR GLY ALA THR LYS SEQRES 13 B 344 LEU CYS SER ASP LYS LEU PHE VAL SER ALA ASN ASN PHE SEQRES 14 B 344 LYS GLY SER SER GLN THR GLN PHE SER VAL VAL ARG TYR SEQRES 15 B 344 GLY ASN VAL VAL GLY SER ARG GLY SER VAL VAL PRO PHE SEQRES 16 B 344 PHE LYS LYS LEU VAL GLN ASN LYS ALA SER GLU ILE PRO SEQRES 17 B 344 ILE THR ASP ILE ARG MET THR ARG PHE TRP ILE THR LEU SEQRES 18 B 344 ASP GLU GLY VAL SER PHE VAL LEU LYS SER LEU LYS ARG SEQRES 19 B 344 MET HIS GLY GLY GLU ILE PHE VAL PRO LYS ILE PRO SER SEQRES 20 B 344 MET LYS MET THR ASP LEU ALA LYS ALA LEU ALA PRO ASN SEQRES 21 B 344 THR PRO THR LYS ILE ILE GLY ILE ARG PRO GLY GLU LYS SEQRES 22 B 344 LEU HIS GLU VAL MET ILE PRO LYS ASP GLU SER HIS LEU SEQRES 23 B 344 ALA LEU GLU PHE GLU ASP PHE PHE ILE ILE GLN PRO THR SEQRES 24 B 344 ILE SER PHE GLN THR PRO LYS ASP TYR THR LEU THR LYS SEQRES 25 B 344 LEU HIS GLU LYS GLY GLN LYS VAL ALA PRO ASP PHE GLU SEQRES 26 B 344 TYR SER SER HIS ASN ASN ASN GLN TRP LEU GLU PRO ASP SEQRES 27 B 344 ASP LEU LEU LYS LEU LEU HET NAP A 334 48 HET UPG A 335 36 HET NAP B 334 48 HET UPG B 335 36 HET MES B 336 12 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 UPG 2(C15 H24 N2 O17 P2) FORMUL 7 MES C6 H13 N O4 S FORMUL 8 HOH *76(H2 O) HELIX 1 1 GLY A 20 THR A 34 1 15 HELIX 2 2 ASP A 45 ASN A 57 1 13 HELIX 3 3 ASP A 70 LEU A 78 1 9 HELIX 4 4 HIS A 92 ASN A 99 1 8 HELIX 5 5 ASN A 99 ASN A 121 1 23 HELIX 6 6 LYS A 133 ALA A 135 5 3 HELIX 7 7 ASN A 139 ALA A 155 1 17 HELIX 8 8 VAL A 182 GLN A 190 1 9 HELIX 9 9 ASP A 211 ARG A 223 1 13 HELIX 10 10 LYS A 238 LEU A 246 1 9 HELIX 11 11 GLU A 272 ALA A 276 5 5 HELIX 12 12 GLY B 20 THR B 34 1 15 HELIX 13 13 ASP B 45 PHE B 56 1 12 HELIX 14 14 ASP B 70 LEU B 78 1 9 HELIX 15 15 HIS B 92 ASN B 99 1 8 HELIX 16 16 ASN B 99 ASN B 121 1 23 HELIX 17 17 THR B 131 ALA B 135 5 5 HELIX 18 18 ASN B 139 ALA B 155 1 17 HELIX 19 19 ASN B 156 PHE B 158 5 3 HELIX 20 20 PRO B 183 ASN B 191 1 9 HELIX 21 21 THR B 209 MET B 224 1 16 HELIX 22 22 MET B 239 ALA B 247 1 9 HELIX 23 23 PRO B 269 HIS B 274 5 6 HELIX 24 24 ASP B 327 LEU B 333 1 7 SHEET 1 A 8 MET A 61 ILE A 65 0 SHEET 2 A 8 LYS A 38 SER A 43 1 N VAL A 41 O PHE A 64 SHEET 3 A 8 THR A 12 THR A 16 1 N ILE A 13 O ILE A 40 SHEET 4 A 8 ILE A 83 HIS A 86 1 O ILE A 85 N THR A 16 SHEET 5 A 8 GLN A 125 THR A 131 1 O ILE A 127 N HIS A 86 SHEET 6 A 8 GLN A 165 TYR A 171 1 O GLN A 165 N VAL A 126 SHEET 7 A 8 ILE A 229 PRO A 232 1 O PHE A 230 N VAL A 168 SHEET 8 A 8 PHE A 282 ILE A 284 -1 O PHE A 283 N VAL A 231 SHEET 1 B 2 ASN A 173 VAL A 174 0 SHEET 2 B 2 TRP A 207 ILE A 208 1 O ILE A 208 N ASN A 173 SHEET 1 C 2 PRO A 197 ILE A 198 0 SHEET 2 C 2 LYS A 253 ILE A 254 1 O LYS A 253 N ILE A 198 SHEET 1 D 9 MET B 61 ILE B 65 0 SHEET 2 D 9 LYS B 38 SER B 43 1 N VAL B 41 O PHE B 64 SHEET 3 D 9 THR B 12 THR B 16 1 N ILE B 13 O ILE B 40 SHEET 4 D 9 ILE B 83 HIS B 86 1 O ILE B 83 N THR B 12 SHEET 5 D 9 GLN B 125 LEU B 129 1 O ILE B 127 N HIS B 86 SHEET 6 D 9 GLN B 165 VAL B 169 1 O SER B 167 N VAL B 126 SHEET 7 D 9 ILE B 229 PRO B 232 1 O PHE B 230 N VAL B 168 SHEET 8 D 9 PHE B 282 ILE B 285 -1 O PHE B 283 N VAL B 231 SHEET 9 D 9 ALA B 276 GLU B 278 -1 N LEU B 277 O ILE B 284 SHEET 1 E 3 ASN B 173 VAL B 174 0 SHEET 2 E 3 THR B 204 ILE B 208 1 O ILE B 208 N ASN B 173 SHEET 3 E 3 SER B 236 LYS B 238 -1 O MET B 237 N ARG B 205 SITE 1 AC1 28 GLY A 17 THR A 19 GLY A 20 SER A 21 SITE 2 AC1 28 PHE A 22 ARG A 44 ASP A 45 LYS A 48 SITE 3 AC1 28 GLY A 66 ASP A 67 VAL A 68 ALA A 87 SITE 4 AC1 28 ALA A 88 ALA A 89 LYS A 91 THR A 106 SITE 5 AC1 28 LEU A 129 SER A 130 TYR A 141 LYS A 145 SITE 6 AC1 28 TYR A 171 GLY A 172 VAL A 174 SER A 177 SITE 7 AC1 28 ARG A 178 HOH A 340 HOH A 360 ASP B 45 SITE 1 AC2 13 LYS A 133 ASN A 173 SER A 180 VAL A 181 SITE 2 AC2 13 PRO A 197 ILE A 198 THR A 199 MET A 203 SITE 3 AC2 13 ARG A 205 MET A 239 ARG A 258 GLU A 261 SITE 4 AC2 13 HOH A 366 SITE 1 AC3 24 THR B 19 GLY B 20 SER B 21 PHE B 22 SITE 2 AC3 24 SER B 43 ARG B 44 ASP B 45 LYS B 48 SITE 3 AC3 24 ASP B 67 VAL B 68 ALA B 87 ALA B 88 SITE 4 AC3 24 ALA B 89 LYS B 91 THR B 106 LEU B 129 SITE 5 AC3 24 SER B 130 TYR B 141 LYS B 145 TYR B 171 SITE 6 AC3 24 GLY B 172 ARG B 178 HOH B 340 HOH B 360 SITE 1 AC4 13 LYS B 133 ASN B 173 SER B 180 VAL B 181 SITE 2 AC4 13 PHE B 185 PRO B 197 THR B 199 MET B 203 SITE 3 AC4 13 ARG B 205 MET B 239 ILE B 255 ARG B 258 SITE 4 AC4 13 GLU B 261 SITE 1 AC5 5 PRO A 100 TYR B 76 SER B 112 ASN B 116 SITE 2 AC5 5 SER B 154 CRYST1 112.376 112.376 107.349 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008899 0.005138 0.000000 0.00000 SCALE2 0.000000 0.010275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009315 0.00000 CONECT 5166 5167 5168 5169 5188 CONECT 5167 5166 CONECT 5168 5166 CONECT 5169 5166 5170 CONECT 5170 5169 5171 CONECT 5171 5170 5172 5173 CONECT 5172 5171 5177 CONECT 5173 5171 5174 5175 CONECT 5174 5173 CONECT 5175 5173 5176 5177 CONECT 5176 5175 5210 CONECT 5177 5172 5175 5178 CONECT 5178 5177 5179 5187 CONECT 5179 5178 5180 CONECT 5180 5179 5181 CONECT 5181 5180 5182 5187 CONECT 5182 5181 5183 5184 CONECT 5183 5182 CONECT 5184 5182 5185 CONECT 5185 5184 5186 CONECT 5186 5185 5187 CONECT 5187 5178 5181 5186 CONECT 5188 5166 5189 CONECT 5189 5188 5190 5191 5192 CONECT 5190 5189 CONECT 5191 5189 CONECT 5192 5189 5193 CONECT 5193 5192 5194 CONECT 5194 5193 5195 5196 CONECT 5195 5194 5200 CONECT 5196 5194 5197 5198 CONECT 5197 5196 CONECT 5198 5196 5199 5200 CONECT 5199 5198 CONECT 5200 5195 5198 5201 CONECT 5201 5200 5202 5209 CONECT 5202 5201 5203 CONECT 5203 5202 5204 5207 CONECT 5204 5203 5205 5206 CONECT 5205 5204 CONECT 5206 5204 CONECT 5207 5203 5208 CONECT 5208 5207 5209 CONECT 5209 5201 5208 CONECT 5210 5176 5211 5212 5213 CONECT 5211 5210 CONECT 5212 5210 CONECT 5213 5210 CONECT 5214 5215 5219 5222 CONECT 5215 5214 5216 5220 CONECT 5216 5215 5217 CONECT 5217 5216 5218 5221 CONECT 5218 5217 5219 CONECT 5219 5214 5218 CONECT 5220 5215 CONECT 5221 5217 CONECT 5222 5214 5223 5227 CONECT 5223 5222 5224 5225 CONECT 5224 5223 CONECT 5225 5223 5226 5228 CONECT 5226 5225 5227 5229 CONECT 5227 5222 5226 CONECT 5228 5225 CONECT 5229 5226 5230 CONECT 5230 5229 5231 CONECT 5231 5230 5232 5233 5234 CONECT 5232 5231 CONECT 5233 5231 CONECT 5234 5231 5235 CONECT 5235 5234 5236 5237 5238 CONECT 5236 5235 CONECT 5237 5235 CONECT 5238 5235 5239 CONECT 5239 5238 5240 5248 CONECT 5240 5239 5241 5245 CONECT 5241 5240 5242 5246 CONECT 5242 5241 5243 5247 CONECT 5243 5242 5244 5248 CONECT 5244 5243 5249 CONECT 5245 5240 CONECT 5246 5241 CONECT 5247 5242 CONECT 5248 5239 5243 CONECT 5249 5244 CONECT 5250 5251 5252 5253 5272 CONECT 5251 5250 CONECT 5252 5250 CONECT 5253 5250 5254 CONECT 5254 5253 5255 CONECT 5255 5254 5256 5257 CONECT 5256 5255 5261 CONECT 5257 5255 5258 5259 CONECT 5258 5257 CONECT 5259 5257 5260 5261 CONECT 5260 5259 5294 CONECT 5261 5256 5259 5262 CONECT 5262 5261 5263 5271 CONECT 5263 5262 5264 CONECT 5264 5263 5265 CONECT 5265 5264 5266 5271 CONECT 5266 5265 5267 5268 CONECT 5267 5266 CONECT 5268 5266 5269 CONECT 5269 5268 5270 CONECT 5270 5269 5271 CONECT 5271 5262 5265 5270 CONECT 5272 5250 5273 CONECT 5273 5272 5274 5275 5276 CONECT 5274 5273 CONECT 5275 5273 CONECT 5276 5273 5277 CONECT 5277 5276 5278 CONECT 5278 5277 5279 5280 CONECT 5279 5278 5284 CONECT 5280 5278 5281 5282 CONECT 5281 5280 CONECT 5282 5280 5283 5284 CONECT 5283 5282 CONECT 5284 5279 5282 5285 CONECT 5285 5284 5286 5293 CONECT 5286 5285 5287 CONECT 5287 5286 5288 5291 CONECT 5288 5287 5289 5290 CONECT 5289 5288 CONECT 5290 5288 CONECT 5291 5287 5292 CONECT 5292 5291 5293 CONECT 5293 5285 5292 CONECT 5294 5260 5295 5296 5297 CONECT 5295 5294 CONECT 5296 5294 CONECT 5297 5294 CONECT 5298 5299 5303 5306 CONECT 5299 5298 5300 5304 CONECT 5300 5299 5301 CONECT 5301 5300 5302 5305 CONECT 5302 5301 5303 CONECT 5303 5298 5302 CONECT 5304 5299 CONECT 5305 5301 CONECT 5306 5298 5307 5311 CONECT 5307 5306 5308 5309 CONECT 5308 5307 CONECT 5309 5307 5310 5312 CONECT 5310 5309 5311 5313 CONECT 5311 5306 5310 CONECT 5312 5309 CONECT 5313 5310 5314 CONECT 5314 5313 5315 CONECT 5315 5314 5316 5317 5318 CONECT 5316 5315 CONECT 5317 5315 CONECT 5318 5315 5319 CONECT 5319 5318 5320 5321 5322 CONECT 5320 5319 CONECT 5321 5319 CONECT 5322 5319 5323 CONECT 5323 5322 5324 5332 CONECT 5324 5323 5325 5329 CONECT 5325 5324 5326 5330 CONECT 5326 5325 5327 5331 CONECT 5327 5326 5328 5332 CONECT 5328 5327 5333 CONECT 5329 5324 CONECT 5330 5325 CONECT 5331 5326 CONECT 5332 5323 5327 CONECT 5333 5328 CONECT 5334 5335 5339 CONECT 5335 5334 5336 CONECT 5336 5335 5337 CONECT 5337 5336 5338 5340 CONECT 5338 5337 5339 CONECT 5339 5334 5338 CONECT 5340 5337 5341 CONECT 5341 5340 5342 CONECT 5342 5341 5343 5344 5345 CONECT 5343 5342 CONECT 5344 5342 CONECT 5345 5342 MASTER 397 0 5 24 24 0 23 6 5419 2 180 54 END