HEADER LYASE 09-APR-06 2GNA TITLE CRYSTAL STRUCTURE OF UDP-GLCNAC INVERTING 4,6-DEHYDRATASE IN COMPLEX TITLE 2 WITH NADP AND UDP-GAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLCNAC C6 DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FLAA1 PROTEIN; COMPND 5 EC: 4.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 STRAIN: NP_207633.1; SOURCE 5 GENE: HP0840; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23 DERIVATIVE KEYWDS ROSSMANN FOLD, TYK TRIAD, SDR, ENZYME, DEHYDRATASE, UDP-GLCNAC, NADP, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ISHIYAMA,C.CREUZENET,J.S.LAM,A.M.BERGHUIS REVDAT 6 30-AUG-23 2GNA 1 REMARK SEQADV REVDAT 5 18-OCT-17 2GNA 1 REMARK REVDAT 4 13-JUL-11 2GNA 1 VERSN REVDAT 3 24-FEB-09 2GNA 1 VERSN REVDAT 2 05-SEP-06 2GNA 1 JRNL REVDAT 1 09-MAY-06 2GNA 0 JRNL AUTH N.ISHIYAMA,C.CREUZENET,W.L.MILLER,M.DEMENDI,E.M.ANDERSON, JRNL AUTH 2 G.HARAUZ,J.S.LAM,A.M.BERGHUIS JRNL TITL STRUCTURAL STUDIES OF FLAA1 FROM HELICOBACTER PYLORI REVEAL JRNL TITL 2 THE MECHANISM FOR INVERTING 4,6-DEHYDRATASE ACTIVITY. JRNL REF J.BIOL.CHEM. V. 281 24489 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16651261 JRNL DOI 10.1074/JBC.M602393200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 23091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2284 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 45 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 418 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 44 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.72900 REMARK 3 B22 (A**2) : -6.72900 REMARK 3 B33 (A**2) : 13.45800 REMARK 3 B12 (A**2) : -8.18100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.402 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.408 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.970 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.889 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 49.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NAP_NI.PAR REMARK 3 PARAMETER FILE 3 : GDU_NI.PAR REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : MES_NI.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GNA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1SB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (V/V) PEG-200, 100 MM MES, 5% REMARK 280 (V/W) PEG-3000, 4% (V/V) ACETONE, PH 6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.67400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.67400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.67400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE TWO REMARK 300 PROTOMERS IN THE ASYMMETRIC UNIT BY THE OPERATIONS:(-Y,X-Y,Z) AND (- REMARK 300 X+Y,-X,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.10900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.18364 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -56.10900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 97.18364 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.10900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.18364 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 4 REMARK 465 MET B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ASN B 3 REMARK 465 HIS B 4 REMARK 465 GLN B 5 REMARK 465 ASN B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 5.10 -159.62 REMARK 500 ASN A 35 41.78 -104.03 REMARK 500 HIS A 92 96.17 -67.26 REMARK 500 SER A 130 -159.35 -104.01 REMARK 500 PHE A 158 96.71 -46.38 REMARK 500 LYS A 159 55.53 -101.78 REMARK 500 SER A 161 -103.66 -88.23 REMARK 500 GLN A 163 78.41 -107.99 REMARK 500 ASN A 173 133.88 -36.76 REMARK 500 ARG A 178 110.09 -35.55 REMARK 500 SER A 180 -167.47 -78.50 REMARK 500 LEU A 188 -77.11 -82.91 REMARK 500 GLN A 190 -95.42 -67.62 REMARK 500 ASN A 191 96.64 -57.15 REMARK 500 LYS A 192 120.72 -22.20 REMARK 500 ALA A 193 103.19 -163.32 REMARK 500 GLU A 195 113.28 -179.31 REMARK 500 ALA A 247 89.55 -162.98 REMARK 500 PRO A 248 -98.65 -36.25 REMARK 500 LYS A 253 -164.92 -103.67 REMARK 500 THR A 293 79.31 -116.38 REMARK 500 THR A 300 170.98 -55.47 REMARK 500 HIS A 303 -5.43 54.19 REMARK 500 LYS A 308 -174.70 -69.60 REMARK 500 PRO A 311 19.21 -62.01 REMARK 500 ASP A 312 25.10 -143.44 REMARK 500 GLU A 314 84.80 -157.00 REMARK 500 SER A 317 28.10 -74.09 REMARK 500 GLN A 322 139.42 -176.77 REMARK 500 LYS A 331 18.16 -68.60 REMARK 500 PHE B 56 73.63 -114.56 REMARK 500 SER B 130 -168.07 -102.75 REMARK 500 LYS B 159 42.78 -151.00 REMARK 500 SER B 161 -93.39 -58.12 REMARK 500 ASN B 173 136.03 -36.80 REMARK 500 SER B 177 132.54 -18.80 REMARK 500 ARG B 178 95.35 -39.12 REMARK 500 SER B 180 -167.19 -127.37 REMARK 500 VAL B 181 -73.84 -54.39 REMARK 500 PRO B 183 -76.52 -50.47 REMARK 500 PHE B 184 -16.84 -49.50 REMARK 500 LYS B 192 -2.55 60.02 REMARK 500 ALA B 193 127.64 -26.70 REMARK 500 MET B 237 130.62 -173.41 REMARK 500 ILE B 254 90.62 -48.90 REMARK 500 ILE B 255 -146.09 -89.40 REMARK 500 PRO B 311 -72.14 -31.41 REMARK 500 ASP B 312 51.63 -94.13 REMARK 500 GLU B 314 125.96 -171.83 REMARK 500 PRO B 326 -74.86 -34.91 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDU A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDU B 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 336 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GN4 RELATED DB: PDB REMARK 900 RELATED ID: 2GN6 RELATED DB: PDB REMARK 900 RELATED ID: 2GN8 RELATED DB: PDB REMARK 900 RELATED ID: 2GN9 RELATED DB: PDB DBREF 2GNA A 1 333 UNP O25511 O25511_HELPY 1 333 DBREF 2GNA B 1 333 UNP O25511 O25511_HELPY 1 333 SEQADV 2GNA MET A -10 UNP O25511 CLONING ARTIFACT SEQADV 2GNA HIS A -9 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS A -8 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS A -7 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS A -6 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS A -5 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS A -4 UNP O25511 EXPRESSION TAG SEQADV 2GNA GLY A -3 UNP O25511 CLONING ARTIFACT SEQADV 2GNA SER A -2 UNP O25511 CLONING ARTIFACT SEQADV 2GNA MET A -1 UNP O25511 CLONING ARTIFACT SEQADV 2GNA SER A 0 UNP O25511 CLONING ARTIFACT SEQADV 2GNA MET B -10 UNP O25511 CLONING ARTIFACT SEQADV 2GNA HIS B -9 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS B -8 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS B -7 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS B -6 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS B -5 UNP O25511 EXPRESSION TAG SEQADV 2GNA HIS B -4 UNP O25511 EXPRESSION TAG SEQADV 2GNA GLY B -3 UNP O25511 CLONING ARTIFACT SEQADV 2GNA SER B -2 UNP O25511 CLONING ARTIFACT SEQADV 2GNA MET B -1 UNP O25511 CLONING ARTIFACT SEQADV 2GNA SER B 0 UNP O25511 CLONING ARTIFACT SEQRES 1 A 344 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER MET PRO SEQRES 2 A 344 ASN HIS GLN ASN MET LEU ASP ASN GLN THR ILE LEU ILE SEQRES 3 A 344 THR GLY GLY THR GLY SER PHE GLY LYS CYS PHE VAL ARG SEQRES 4 A 344 LYS VAL LEU ASP THR THR ASN ALA LYS LYS ILE ILE VAL SEQRES 5 A 344 TYR SER ARG ASP GLU LEU LYS GLN SER GLU MET ALA MET SEQRES 6 A 344 GLU PHE ASN ASP PRO ARG MET ARG PHE PHE ILE GLY ASP SEQRES 7 A 344 VAL ARG ASP LEU GLU ARG LEU ASN TYR ALA LEU GLU GLY SEQRES 8 A 344 VAL ASP ILE CYS ILE HIS ALA ALA ALA LEU LYS HIS VAL SEQRES 9 A 344 PRO ILE ALA GLU TYR ASN PRO LEU GLU CYS ILE LYS THR SEQRES 10 A 344 ASN ILE MET GLY ALA SER ASN VAL ILE ASN ALA CYS LEU SEQRES 11 A 344 LYS ASN ALA ILE SER GLN VAL ILE ALA LEU SER THR ASP SEQRES 12 A 344 LYS ALA ALA ASN PRO ILE ASN LEU TYR GLY ALA THR LYS SEQRES 13 A 344 LEU CYS SER ASP LYS LEU PHE VAL SER ALA ASN ASN PHE SEQRES 14 A 344 LYS GLY SER SER GLN THR GLN PHE SER VAL VAL ARG TYR SEQRES 15 A 344 GLY ASN VAL VAL GLY SER ARG GLY SER VAL VAL PRO PHE SEQRES 16 A 344 PHE LYS LYS LEU VAL GLN ASN LYS ALA SER GLU ILE PRO SEQRES 17 A 344 ILE THR ASP ILE ARG MET THR ARG PHE TRP ILE THR LEU SEQRES 18 A 344 ASP GLU GLY VAL SER PHE VAL LEU LYS SER LEU LYS ARG SEQRES 19 A 344 MET HIS GLY GLY GLU ILE PHE VAL PRO LYS ILE PRO SER SEQRES 20 A 344 MET LYS MET THR ASP LEU ALA LYS ALA LEU ALA PRO ASN SEQRES 21 A 344 THR PRO THR LYS ILE ILE GLY ILE ARG PRO GLY GLU LYS SEQRES 22 A 344 LEU HIS GLU VAL MET ILE PRO LYS ASP GLU SER HIS LEU SEQRES 23 A 344 ALA LEU GLU PHE GLU ASP PHE PHE ILE ILE GLN PRO THR SEQRES 24 A 344 ILE SER PHE GLN THR PRO LYS ASP TYR THR LEU THR LYS SEQRES 25 A 344 LEU HIS GLU LYS GLY GLN LYS VAL ALA PRO ASP PHE GLU SEQRES 26 A 344 TYR SER SER HIS ASN ASN ASN GLN TRP LEU GLU PRO ASP SEQRES 27 A 344 ASP LEU LEU LYS LEU LEU SEQRES 1 B 344 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER MET PRO SEQRES 2 B 344 ASN HIS GLN ASN MET LEU ASP ASN GLN THR ILE LEU ILE SEQRES 3 B 344 THR GLY GLY THR GLY SER PHE GLY LYS CYS PHE VAL ARG SEQRES 4 B 344 LYS VAL LEU ASP THR THR ASN ALA LYS LYS ILE ILE VAL SEQRES 5 B 344 TYR SER ARG ASP GLU LEU LYS GLN SER GLU MET ALA MET SEQRES 6 B 344 GLU PHE ASN ASP PRO ARG MET ARG PHE PHE ILE GLY ASP SEQRES 7 B 344 VAL ARG ASP LEU GLU ARG LEU ASN TYR ALA LEU GLU GLY SEQRES 8 B 344 VAL ASP ILE CYS ILE HIS ALA ALA ALA LEU LYS HIS VAL SEQRES 9 B 344 PRO ILE ALA GLU TYR ASN PRO LEU GLU CYS ILE LYS THR SEQRES 10 B 344 ASN ILE MET GLY ALA SER ASN VAL ILE ASN ALA CYS LEU SEQRES 11 B 344 LYS ASN ALA ILE SER GLN VAL ILE ALA LEU SER THR ASP SEQRES 12 B 344 LYS ALA ALA ASN PRO ILE ASN LEU TYR GLY ALA THR LYS SEQRES 13 B 344 LEU CYS SER ASP LYS LEU PHE VAL SER ALA ASN ASN PHE SEQRES 14 B 344 LYS GLY SER SER GLN THR GLN PHE SER VAL VAL ARG TYR SEQRES 15 B 344 GLY ASN VAL VAL GLY SER ARG GLY SER VAL VAL PRO PHE SEQRES 16 B 344 PHE LYS LYS LEU VAL GLN ASN LYS ALA SER GLU ILE PRO SEQRES 17 B 344 ILE THR ASP ILE ARG MET THR ARG PHE TRP ILE THR LEU SEQRES 18 B 344 ASP GLU GLY VAL SER PHE VAL LEU LYS SER LEU LYS ARG SEQRES 19 B 344 MET HIS GLY GLY GLU ILE PHE VAL PRO LYS ILE PRO SER SEQRES 20 B 344 MET LYS MET THR ASP LEU ALA LYS ALA LEU ALA PRO ASN SEQRES 21 B 344 THR PRO THR LYS ILE ILE GLY ILE ARG PRO GLY GLU LYS SEQRES 22 B 344 LEU HIS GLU VAL MET ILE PRO LYS ASP GLU SER HIS LEU SEQRES 23 B 344 ALA LEU GLU PHE GLU ASP PHE PHE ILE ILE GLN PRO THR SEQRES 24 B 344 ILE SER PHE GLN THR PRO LYS ASP TYR THR LEU THR LYS SEQRES 25 B 344 LEU HIS GLU LYS GLY GLN LYS VAL ALA PRO ASP PHE GLU SEQRES 26 B 344 TYR SER SER HIS ASN ASN ASN GLN TRP LEU GLU PRO ASP SEQRES 27 B 344 ASP LEU LEU LYS LEU LEU HET GDU A 335 36 HET NAP A 334 48 HET GDU B 335 36 HET NAP B 334 48 HET MES B 336 12 HETNAM GDU GALACTOSE-URIDINE-5'-DIPHOSPHATE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN GDU UDP-D-GALACTOPYRANOSE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 GDU 2(C15 H24 N2 O17 P2) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 7 MES C6 H13 N O4 S FORMUL 8 HOH *173(H2 O) HELIX 1 1 GLY A 20 THR A 34 1 15 HELIX 2 2 ASP A 45 ASN A 57 1 13 HELIX 3 3 ASP A 70 LEU A 78 1 9 HELIX 4 4 HIS A 92 ASN A 99 1 8 HELIX 5 5 ASN A 99 ASN A 121 1 23 HELIX 6 6 THR A 131 ALA A 135 5 5 HELIX 7 7 ASN A 139 ALA A 155 1 17 HELIX 8 8 SER A 180 VAL A 189 1 10 HELIX 9 9 THR A 209 MET A 224 1 16 HELIX 10 10 THR A 240 LYS A 244 5 5 HELIX 11 11 PRO A 269 HIS A 274 5 6 HELIX 12 12 GLU A 325 LYS A 331 1 7 HELIX 13 13 GLY B 20 THR B 34 1 15 HELIX 14 14 ASP B 45 PHE B 56 1 12 HELIX 15 15 ASP B 70 LEU B 78 1 9 HELIX 16 16 HIS B 92 ASN B 99 1 8 HELIX 17 17 ASN B 99 ILE B 108 1 10 HELIX 18 18 ILE B 108 ASN B 121 1 14 HELIX 19 19 THR B 131 ALA B 135 5 5 HELIX 20 20 ASN B 139 ALA B 155 1 17 HELIX 21 21 ASN B 156 PHE B 158 5 3 HELIX 22 22 GLY B 176 GLY B 179 5 4 HELIX 23 23 SER B 180 ASN B 191 1 12 HELIX 24 24 THR B 209 MET B 224 1 16 HELIX 25 25 MET B 239 ALA B 247 1 9 HELIX 26 26 PRO B 269 HIS B 274 5 6 HELIX 27 27 GLU B 325 LYS B 331 1 7 SHEET 1 A 9 MET A 61 ILE A 65 0 SHEET 2 A 9 LYS A 38 SER A 43 1 N VAL A 41 O PHE A 64 SHEET 3 A 9 THR A 12 THR A 16 1 N ILE A 13 O ILE A 40 SHEET 4 A 9 ILE A 83 HIS A 86 1 O ILE A 83 N LEU A 14 SHEET 5 A 9 GLN A 125 LEU A 129 1 O ILE A 127 N HIS A 86 SHEET 6 A 9 GLN A 165 VAL A 169 1 O SER A 167 N VAL A 126 SHEET 7 A 9 ILE A 229 PRO A 232 1 O PHE A 230 N VAL A 168 SHEET 8 A 9 PHE A 282 ILE A 285 -1 O PHE A 283 N VAL A 231 SHEET 9 A 9 ALA A 276 GLU A 278 -1 N LEU A 277 O ILE A 284 SHEET 1 B 2 THR A 204 PHE A 206 0 SHEET 2 B 2 SER A 236 LYS A 238 -1 O MET A 237 N ARG A 205 SHEET 1 C 2 VAL A 266 ILE A 268 0 SHEET 2 C 2 TYR A 315 SER A 316 -1 O TYR A 315 N MET A 267 SHEET 1 D 9 MET B 61 ILE B 65 0 SHEET 2 D 9 LYS B 38 SER B 43 1 N VAL B 41 O PHE B 64 SHEET 3 D 9 THR B 12 THR B 16 1 N ILE B 13 O ILE B 40 SHEET 4 D 9 ILE B 83 HIS B 86 1 O ILE B 85 N LEU B 14 SHEET 5 D 9 GLN B 125 LEU B 129 1 O ILE B 127 N HIS B 86 SHEET 6 D 9 GLN B 165 VAL B 169 1 O SER B 167 N VAL B 126 SHEET 7 D 9 ILE B 229 PRO B 232 1 O PHE B 230 N VAL B 168 SHEET 8 D 9 PHE B 282 ILE B 285 -1 O PHE B 283 N VAL B 231 SHEET 9 D 9 ALA B 276 GLU B 278 -1 N LEU B 277 O ILE B 284 SHEET 1 E 2 ILE B 196 ILE B 198 0 SHEET 2 E 2 THR B 252 ILE B 254 1 O LYS B 253 N ILE B 196 SHEET 1 F 2 THR B 204 PHE B 206 0 SHEET 2 F 2 SER B 236 LYS B 238 -1 O MET B 237 N ARG B 205 SHEET 1 G 2 VAL B 266 ILE B 268 0 SHEET 2 G 2 TYR B 315 SER B 316 -1 O TYR B 315 N MET B 267 SITE 1 AC1 15 LYS A 91 HIS A 92 PRO A 94 ASN A 173 SITE 2 AC1 15 SER A 177 ARG A 178 SER A 180 VAL A 181 SITE 3 AC1 15 PRO A 197 THR A 199 MET A 203 ARG A 205 SITE 4 AC1 15 MET A 239 ARG A 258 GLU A 261 SITE 1 AC2 18 LYS B 91 ASN B 173 SER B 177 ARG B 178 SITE 2 AC2 18 GLY B 179 SER B 180 VAL B 181 PHE B 185 SITE 3 AC2 18 PRO B 197 ILE B 198 THR B 199 MET B 203 SITE 4 AC2 18 ARG B 205 MET B 239 ARG B 258 GLU B 261 SITE 5 AC2 18 HOH B 408 HOH B 418 SITE 1 AC3 31 GLY A 17 THR A 19 GLY A 20 SER A 21 SITE 2 AC3 31 PHE A 22 SER A 43 ARG A 44 ASP A 45 SITE 3 AC3 31 LYS A 48 GLY A 66 ASP A 67 VAL A 68 SITE 4 AC3 31 ALA A 87 ALA A 88 ALA A 89 LYS A 91 SITE 5 AC3 31 THR A 106 LEU A 129 SER A 130 TYR A 141 SITE 6 AC3 31 LYS A 145 TYR A 171 GLY A 172 VAL A 174 SITE 7 AC3 31 SER A 177 ARG A 178 HOH A 352 HOH A 371 SITE 8 AC3 31 HOH A 376 HOH A 391 HOH A 395 SITE 1 AC4 28 GLY B 17 THR B 19 GLY B 20 SER B 21 SITE 2 AC4 28 PHE B 22 SER B 43 ARG B 44 ASP B 45 SITE 3 AC4 28 LYS B 48 ASP B 67 VAL B 68 ALA B 87 SITE 4 AC4 28 ALA B 88 ALA B 89 LYS B 91 THR B 106 SITE 5 AC4 28 LEU B 129 SER B 130 TYR B 141 LYS B 145 SITE 6 AC4 28 TYR B 171 GLY B 172 VAL B 174 ARG B 178 SITE 7 AC4 28 HOH B 340 HOH B 372 HOH B 376 HOH B 377 SITE 1 AC5 11 ASN A 99 PRO A 100 LEU A 101 HOH A 357 SITE 2 AC5 11 GLU B 72 ARG B 73 TYR B 76 SER B 112 SITE 3 AC5 11 ASN B 116 SER B 154 HOH B 337 CRYST1 112.218 112.218 107.348 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008911 0.005145 0.000000 0.00000 SCALE2 0.000000 0.010290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009315 0.00000