HEADER REPLICATION 10-APR-06 2GNO TITLE CRYSTAL STRUCTURE OF A DNA POLYMERASE III, GAMMA SUBUNIT-RELATED TITLE 2 PROTEIN (TM0771) FROM THERMOTOGA MARITIMA MSB8 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III, GAMMA SUBUNIT-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 9-312; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0771; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2GNO 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2GNO 1 VERSN REVDAT 3 23-MAR-11 2GNO 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2GNO 1 VERSN REVDAT 1 18-APR-06 2GNO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DNA POLYMERASE III, GAMMA JRNL TITL 2 SUBUNIT-RELATED PROTEIN (TM0771) FROM THERMOTOGA MARITIMA AT JRNL TITL 3 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1504 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2346 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : 1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.889 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2466 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2343 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3341 ; 1.684 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5432 ; 1.188 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 2.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;25.182 ;24.112 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ; 8.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ; 8.252 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2707 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 532 ; 0.180 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2275 ; 0.123 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1206 ; 0.165 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1307 ; 0.081 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.169 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.145 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.109 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.220 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1513 ; 1.427 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 605 ; 0.385 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2458 ; 2.420 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 977 ; 4.208 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 881 ; 6.140 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2960 78.5452 27.1236 REMARK 3 T TENSOR REMARK 3 T11: -0.0210 T22: 0.1935 REMARK 3 T33: -0.0947 T12: -0.0383 REMARK 3 T13: -0.0224 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 2.2739 L22: 6.0604 REMARK 3 L33: 6.0805 L12: 3.3447 REMARK 3 L13: -0.0458 L23: -2.5080 REMARK 3 S TENSOR REMARK 3 S11: -0.4766 S12: 0.8218 S13: 0.1320 REMARK 3 S21: -0.8650 S22: 0.6166 S23: -0.1455 REMARK 3 S31: 0.0443 S32: -1.0041 S33: -0.1401 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3750 72.9649 39.6628 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0088 REMARK 3 T33: -0.0353 T12: -0.0268 REMARK 3 T13: 0.0039 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.9919 L22: 4.5978 REMARK 3 L33: 4.9265 L12: 1.5443 REMARK 3 L13: -2.4187 L23: -2.2967 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: -0.0827 S13: 0.0972 REMARK 3 S21: 0.1565 S22: 0.0308 S23: 0.1339 REMARK 3 S31: 0.2259 S32: -0.3391 S33: 0.0622 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5658 63.0713 26.8708 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: -0.0902 REMARK 3 T33: -0.0867 T12: -0.0196 REMARK 3 T13: 0.1473 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.7286 L22: 1.6663 REMARK 3 L33: 0.7421 L12: -1.5147 REMARK 3 L13: 0.0920 L23: 0.2696 REMARK 3 S TENSOR REMARK 3 S11: 0.2961 S12: 0.1797 S13: 0.1402 REMARK 3 S21: -0.4440 S22: -0.2409 S23: -0.1179 REMARK 3 S31: 0.3113 S32: -0.1436 S33: -0.0552 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 44.1169 44.9327 36.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: -0.0564 REMARK 3 T33: -0.0097 T12: 0.0281 REMARK 3 T13: 0.0464 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.4266 L22: 3.9158 REMARK 3 L33: 1.8175 L12: 0.6897 REMARK 3 L13: -0.4104 L23: 0.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.1276 S12: -0.0452 S13: 0.0343 REMARK 3 S21: 0.0263 S22: 0.0868 S23: 0.1446 REMARK 3 S31: -0.0776 S32: -0.0887 S33: -0.2144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1). HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2). A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3). TWO MOLECULES OF 2-ETHOXYETHANOL FROM REMARK 3 THE CRYSTALLIZATION BUFFER HAS BEEN MODELED INTO THE STRUCTURE. REMARK 3 4). AN UNKNOWN LIGAND HAS BEEN MODELED INTO THE STRUCTURE REMARK 3 BETWEEN THE SIDECHAINS OF LEU 168 AND ARG 254. 5.) ATOM RECORD REMARK 3 CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2GNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979224, 0.918370, 0.978940 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP V. 1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35.0% 2-ETHOXYETHANOL, 0.2M NACL, 0.1M REMARK 280 NA,K-PHOSPHATE, PH 6.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.78000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.78000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.78000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.78000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.78000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.78000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 67.78000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 67.78000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 17.78000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 67.78000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 67.78000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 17.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 307 REMARK 465 VAL A 308 REMARK 465 ASN A 309 REMARK 465 ALA A 310 REMARK 465 TRP A 311 REMARK 465 SER A 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 18 CD NE CZ NH1 NH2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 55 CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 ASP A 79 OD1 OD2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLU A 115 CB CG CD OE1 OE2 REMARK 470 LEU A 133 CD1 CD2 REMARK 470 LYS A 137 CE NZ REMARK 470 VAL A 144 CG1 CG2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LYS A 158 CE NZ REMARK 470 LYS A 181 NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 198 CD OE1 OE2 REMARK 470 GLU A 200 CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG A 257 NH1 NH2 REMARK 470 GLU A 266 CB CG CD OE1 OE2 REMARK 470 SER A 267 CB OG REMARK 470 ARG A 282 CZ NH1 NH2 REMARK 470 LYS A 284 CD CE NZ REMARK 470 ARG A 304 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 61.37 -115.54 REMARK 500 ASP A 63 75.88 -160.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ETX A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ETX A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 360384 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE: REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY REMARK 999 RESIDUES 9-312 OF THE TM0771 SEQUENCE. A SMALL REMARK 999 AMOUNT OF PROTEIN WITH THE TAG UNCLEAVED REMAINED REMARK 999 IN THE SAMPLE AFTER PURIFICATION. A SERIES OF REMARK 999 DIFFERENT LENGTH N-TERMINAL TRUNCATIONS WERE TRIED REMARK 999 TO IMPROVE DIFFRACTION QUALITY FROM THIS TARGET. REMARK 999 THE CONSTRUCT WITH RESIDUES 1-8 ELIMINATED PRODUCED REMARK 999 THE BEST DIFFRACTING CRYSTAL. DBREF 2GNO A 9 312 UNP Q9WZM9 Q9WZM9_THEMA 9 312 SEQADV 2GNO GLY A 8 UNP Q9WZM9 EXPRESSION TAG SEQADV 2GNO MSE A 101 UNP Q9WZM9 MET 101 MODIFIED RESIDUE SEQADV 2GNO MSE A 191 UNP Q9WZM9 MET 191 MODIFIED RESIDUE SEQADV 2GNO MSE A 295 UNP Q9WZM9 MET 295 MODIFIED RESIDUE SEQRES 1 A 305 GLY ALA LYS ASP GLN LEU GLU THR LEU LYS ARG ILE ILE SEQRES 2 A 305 GLU LYS SER GLU GLY ILE SER ILE LEU ILE ASN GLY GLU SEQRES 3 A 305 ASP LEU SER TYR PRO ARG GLU VAL SER LEU GLU LEU PRO SEQRES 4 A 305 GLU TYR VAL GLU LYS PHE PRO PRO LYS ALA SER ASP VAL SEQRES 5 A 305 LEU GLU ILE ASP PRO GLU GLY GLU ASN ILE GLY ILE ASP SEQRES 6 A 305 ASP ILE ARG THR ILE LYS ASP PHE LEU ASN TYR SER PRO SEQRES 7 A 305 GLU LEU TYR THR ARG LYS TYR VAL ILE VAL HIS ASP CYS SEQRES 8 A 305 GLU ARG MSE THR GLN GLN ALA ALA ASN ALA PHE LEU LYS SEQRES 9 A 305 ALA LEU GLU GLU PRO PRO GLU TYR ALA VAL ILE VAL LEU SEQRES 10 A 305 ASN THR ARG ARG TRP HIS TYR LEU LEU PRO THR ILE LYS SEQRES 11 A 305 SER ARG VAL PHE ARG VAL VAL VAL ASN VAL PRO LYS GLU SEQRES 12 A 305 PHE ARG ASP LEU VAL LYS GLU LYS ILE GLY ASP LEU TRP SEQRES 13 A 305 GLU GLU LEU PRO LEU LEU GLU ARG ASP PHE LYS THR ALA SEQRES 14 A 305 LEU GLU ALA TYR LYS LEU GLY ALA GLU LYS LEU SER GLY SEQRES 15 A 305 LEU MSE GLU SER LEU LYS VAL LEU GLU THR GLU LYS LEU SEQRES 16 A 305 LEU LYS LYS VAL LEU SER LYS GLY LEU GLU GLY TYR LEU SEQRES 17 A 305 ALA CYS ARG GLU LEU LEU GLU ARG PHE SER LYS VAL GLU SEQRES 18 A 305 SER LYS GLU PHE PHE ALA LEU PHE ASP GLN VAL THR ASN SEQRES 19 A 305 THR ILE THR GLY LYS ASP ALA PHE LEU LEU ILE GLN ARG SEQRES 20 A 305 LEU THR ARG ILE ILE LEU HIS GLU ASN THR TRP GLU SER SEQRES 21 A 305 VAL GLU ASP GLN LYS SER VAL SER PHE LEU ASP SER ILE SEQRES 22 A 305 LEU ARG VAL LYS ILE ALA ASN LEU ASN ASN LYS LEU THR SEQRES 23 A 305 LEU MSE ASN ILE LEU ALA ILE HIS ARG GLU ARG LYS ARG SEQRES 24 A 305 GLY VAL ASN ALA TRP SER MODRES 2GNO MSE A 101 MET SELENOMETHIONINE MODRES 2GNO MSE A 191 MET SELENOMETHIONINE MODRES 2GNO MSE A 295 MET SELENOMETHIONINE HET MSE A 101 8 HET MSE A 191 8 HET MSE A 295 8 HET NA A 2 1 HET UNL A 1 4 HET ETX A 3 6 HET ETX A 4 6 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM UNL UNKNOWN LIGAND HETNAM ETX 2-ETHOXYETHANOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 4 ETX 2(C4 H10 O2) FORMUL 6 HOH *107(H2 O) HELIX 1 1 ASP A 11 LYS A 22 1 12 HELIX 2 2 SER A 36 LYS A 51 1 16 HELIX 3 3 GLY A 70 ASN A 82 1 13 HELIX 4 4 ASP A 97 MSE A 101 5 5 HELIX 5 5 THR A 102 PHE A 109 1 8 HELIX 6 6 PHE A 109 GLU A 115 1 7 HELIX 7 7 ARG A 128 LEU A 132 5 5 HELIX 8 8 LEU A 133 SER A 138 1 6 HELIX 9 9 PRO A 148 GLY A 160 1 13 HELIX 10 10 ASP A 161 LEU A 166 1 6 HELIX 11 11 PRO A 167 ARG A 171 5 5 HELIX 12 12 ASP A 172 LEU A 197 1 26 HELIX 13 13 GLU A 198 LEU A 203 1 6 HELIX 14 14 LYS A 209 VAL A 227 1 19 HELIX 15 15 GLU A 228 LYS A 230 5 3 HELIX 16 16 GLU A 231 ILE A 243 1 13 HELIX 17 17 GLY A 245 GLU A 262 1 18 HELIX 18 18 SER A 267 ARG A 282 1 16 HELIX 19 19 VAL A 283 LEU A 288 5 6 HELIX 20 20 ASN A 289 ARG A 306 1 18 SHEET 1 A 5 VAL A 59 ILE A 62 0 SHEET 2 A 5 LYS A 91 VAL A 95 1 O ILE A 94 N LEU A 60 SHEET 3 A 5 ALA A 120 THR A 126 1 O VAL A 123 N VAL A 93 SHEET 4 A 5 ILE A 26 ASN A 31 1 N ILE A 28 O LEU A 124 SHEET 5 A 5 PHE A 141 VAL A 144 1 O VAL A 143 N ASN A 31 LINK C ARG A 100 N MSE A 101 1555 1555 1.34 LINK C MSE A 101 N THR A 102 1555 1555 1.33 LINK C LEU A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N BGLU A 192 1555 1555 1.34 LINK C MSE A 191 N AGLU A 192 1555 1555 1.33 LINK C LEU A 294 N MSE A 295 1555 1555 1.33 LINK C MSE A 295 N ASN A 296 1555 1555 1.33 SITE 1 AC1 5 LEU A 168 ASP A 172 GLY A 210 TYR A 214 SITE 2 AC1 5 ARG A 254 SITE 1 AC2 3 GLU A 219 ARG A 223 VAL A 227 SITE 1 AC3 4 LEU A 43 PRO A 54 VAL A 59 LYS A 230 CRYST1 135.560 135.560 35.560 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028120 0.00000