HEADER OXYGEN STORAGE/TRANSPORT 11-APR-06 2GNW TITLE CRYSTAL STRUCTURE OF NON-SYMBIOTIC PLANT HEMOGLOBIN FROM RICE, B10 TITLE 2 MUTANT F40W COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SYMBIOTIC HEMOGLOBIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RHB1, ORYSA GLB1A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: HB1, GLB1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS 2 ON 2 HELICAL FOLD, GLOBIN, HEME, IRON, HEMOGLOBIN, HEXACOORDINATE, KEYWDS 2 NONSYMBIOTIC, RICE, OXYGEN STORAGE-TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.HOY REVDAT 5 14-FEB-24 2GNW 1 REMARK REVDAT 4 20-OCT-21 2GNW 1 REMARK SEQADV REVDAT 3 24-FEB-09 2GNW 1 VERSN REVDAT 2 07-NOV-06 2GNW 1 JRNL REVDAT 1 25-APR-06 2GNW 0 JRNL AUTH B.J.SMAGGHE,S.KUNDU,J.A.HOY,P.HALDER,T.R.WEILAND,A.SAVAGE, JRNL AUTH 2 A.VENUGOPAL,M.GOODMAN,S.PREMER,M.S.HARGROVE JRNL TITL ROLE OF PHENYLALANINE B10 IN PLANT NONSYMBIOTIC HEMOGLOBINS. JRNL REF BIOCHEMISTRY V. 45 9735 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16893175 JRNL DOI 10.1021/BI060716S REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 57.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 19902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1826 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2424 REMARK 3 BIN FREE R VALUE : 0.2798 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 210 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.045 REMARK 3 BOND ANGLES (DEGREES) : 2.770 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.83 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.440 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 40.57 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : HEME.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.844 REMARK 200 RESOLUTION RANGE LOW (A) : 111.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.960 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.12 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M AMMONIUM PHOSPHATE, 10MM REMARK 280 POTASSIUM PHOSPHATE, 20% SUCROSE, 3% DIOXANE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.90833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.81667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.81667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.90833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 184 O HOH B 201 1.77 REMARK 500 OD1 ASP B 127 O HOH B 186 2.05 REMARK 500 O MET B 137 O HOH B 194 2.18 REMARK 500 NE ARG B 38 OE1 GLU B 132 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 202 O HOH A 203 3564 1.92 REMARK 500 OD1 ASP A 61 O HOH B 177 2665 2.03 REMARK 500 NH1 ARG A 89 O HOH B 176 2664 2.05 REMARK 500 OH TYR A 111 O HOH A 171 4555 2.14 REMARK 500 CD1 LEU B 64 O HOH A 185 3564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 4 CG GLU A 4 CD 0.108 REMARK 500 VAL A 21 CB VAL A 21 CG1 -0.143 REMARK 500 VAL A 21 C VAL A 21 O -0.141 REMARK 500 PHE A 39 CE1 PHE A 39 CZ -0.161 REMARK 500 PHE A 39 CZ PHE A 39 CE2 -0.151 REMARK 500 TRP A 40 CB TRP A 40 CG 0.199 REMARK 500 MET A 53 SD MET A 53 CE -0.450 REMARK 500 PHE A 56 CB PHE A 56 CG 0.107 REMARK 500 GLU A 65 CD GLU A 65 OE2 0.101 REMARK 500 LYS A 66 C LYS A 66 O 0.131 REMARK 500 LYS A 69 CE LYS A 69 NZ 0.182 REMARK 500 CYS A 82 CB CYS A 82 SG -0.114 REMARK 500 TYR A 111 CZ TYR A 111 OH 0.125 REMARK 500 TYR A 111 CZ TYR A 111 CE2 0.100 REMARK 500 VAL A 121 CB VAL A 121 CG1 -0.140 REMARK 500 TRP A 146 CB TRP A 146 CG 0.140 REMARK 500 GLU A 165 CD GLU A 165 OE1 0.098 REMARK 500 GLU A 165 CD GLU A 165 OE2 0.105 REMARK 500 PHE B 39 CE1 PHE B 39 CZ -0.122 REMARK 500 ILE B 43 C ILE B 43 O -0.116 REMARK 500 GLU B 45 CG GLU B 45 CD -0.108 REMARK 500 GLU B 45 CD GLU B 45 OE1 -0.077 REMARK 500 ALA B 47 CA ALA B 47 CB -0.142 REMARK 500 PHE B 78 CE2 PHE B 78 CD2 0.153 REMARK 500 CYS B 82 CB CYS B 82 SG -0.099 REMARK 500 VAL B 113 CB VAL B 113 CG2 -0.132 REMARK 500 TRP B 138 CB TRP B 138 CG 0.120 REMARK 500 SER B 147 CA SER B 147 C -0.168 REMARK 500 TYR B 150 CD1 TYR B 150 CE1 -0.152 REMARK 500 GLU B 165 CG GLU B 165 CD 0.097 REMARK 500 GLU B 165 CD GLU B 165 OE1 0.151 REMARK 500 GLU B 165 CD GLU B 165 OE2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 5 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 127 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 136 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 31 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 38 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU B 57 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP B 61 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 136 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLU B 160 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 32.83 -172.25 REMARK 500 ASN A 6 -90.41 -144.24 REMARK 500 VAL A 9 109.60 -47.02 REMARK 500 ALA A 10 81.69 -51.30 REMARK 500 ASP A 31 55.33 -158.34 REMARK 500 SER A 55 158.98 -43.30 REMARK 500 LEU A 57 -55.11 -145.24 REMARK 500 SER A 60 15.39 56.26 REMARK 500 LYS A 66 -73.52 -59.14 REMARK 500 THR A 95 61.85 -115.44 REMARK 500 ALA A 135 -18.18 -42.48 REMARK 500 PRO A 163 175.97 -48.79 REMARK 500 ALA B 8 -1.11 -151.63 REMARK 500 ALA B 10 99.95 -52.01 REMARK 500 SER B 51 37.88 -84.83 REMARK 500 PHE B 54 -91.23 -102.59 REMARK 500 PHE B 56 170.10 -43.78 REMARK 500 ASN B 59 -81.28 -148.60 REMARK 500 ASP B 61 69.09 95.78 REMARK 500 VAL B 62 134.77 -170.89 REMARK 500 PRO B 63 12.01 -57.11 REMARK 500 GLU B 65 62.17 81.31 REMARK 500 PRO B 163 -178.00 -49.49 REMARK 500 ALA B 164 170.17 -44.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 55 PHE A 56 -131.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 166 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 HEM A 166 NA 86.7 REMARK 620 3 HEM A 166 NB 99.0 88.0 REMARK 620 4 HEM A 166 NC 94.4 178.8 92.2 REMARK 620 5 HEM A 166 ND 76.6 91.3 175.6 88.5 REMARK 620 6 HIS A 108 NE2 177.4 95.4 82.7 83.5 101.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 166 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 73 NE2 REMARK 620 2 HEM B 166 NA 97.3 REMARK 620 3 HEM B 166 NB 92.2 87.5 REMARK 620 4 HEM B 166 NC 82.7 176.0 88.5 REMARK 620 5 HEM B 166 ND 88.8 91.3 178.5 92.7 REMARK 620 6 HIS B 108 NE2 168.3 94.0 85.3 85.8 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 166 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GNV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NON-SYMBIOTIC PLANT HEMOGLOBIN FROM RICE, B10 REMARK 900 MUTANT F40L DBREF 2GNW A 1 165 UNP O04986 HBL1_ORYSA 2 166 DBREF 2GNW B 1 165 UNP O04986 HBL1_ORYSA 2 166 SEQADV 2GNW TRP A 40 UNP O04986 PHE 41 ENGINEERED MUTATION SEQADV 2GNW TRP B 40 UNP O04986 PHE 41 ENGINEERED MUTATION SEQRES 1 A 165 ALA LEU VAL GLU ASP ASN ASN ALA VAL ALA VAL SER PHE SEQRES 2 A 165 SER GLU GLU GLN GLU ALA LEU VAL LEU LYS SER TRP ALA SEQRES 3 A 165 ILE LEU LYS LYS ASP SER ALA ASN ILE ALA LEU ARG PHE SEQRES 4 A 165 TRP LEU LYS ILE PHE GLU VAL ALA PRO SER ALA SER GLN SEQRES 5 A 165 MET PHE SER PHE LEU ARG ASN SER ASP VAL PRO LEU GLU SEQRES 6 A 165 LYS ASN PRO LYS LEU LYS THR HIS ALA MET SER VAL PHE SEQRES 7 A 165 VAL MET THR CYS GLU ALA ALA ALA GLN LEU ARG LYS ALA SEQRES 8 A 165 GLY LYS VAL THR VAL ARG ASP THR THR LEU LYS ARG LEU SEQRES 9 A 165 GLY ALA THR HIS LEU LYS TYR GLY VAL GLY ASP ALA HIS SEQRES 10 A 165 PHE GLU VAL VAL LYS PHE ALA LEU LEU ASP THR ILE LYS SEQRES 11 A 165 GLU GLU VAL PRO ALA ASP MET TRP SER PRO ALA MET LYS SEQRES 12 A 165 SER ALA TRP SER GLU ALA TYR ASP HIS LEU VAL ALA ALA SEQRES 13 A 165 ILE LYS GLN GLU MET LYS PRO ALA GLU SEQRES 1 B 165 ALA LEU VAL GLU ASP ASN ASN ALA VAL ALA VAL SER PHE SEQRES 2 B 165 SER GLU GLU GLN GLU ALA LEU VAL LEU LYS SER TRP ALA SEQRES 3 B 165 ILE LEU LYS LYS ASP SER ALA ASN ILE ALA LEU ARG PHE SEQRES 4 B 165 TRP LEU LYS ILE PHE GLU VAL ALA PRO SER ALA SER GLN SEQRES 5 B 165 MET PHE SER PHE LEU ARG ASN SER ASP VAL PRO LEU GLU SEQRES 6 B 165 LYS ASN PRO LYS LEU LYS THR HIS ALA MET SER VAL PHE SEQRES 7 B 165 VAL MET THR CYS GLU ALA ALA ALA GLN LEU ARG LYS ALA SEQRES 8 B 165 GLY LYS VAL THR VAL ARG ASP THR THR LEU LYS ARG LEU SEQRES 9 B 165 GLY ALA THR HIS LEU LYS TYR GLY VAL GLY ASP ALA HIS SEQRES 10 B 165 PHE GLU VAL VAL LYS PHE ALA LEU LEU ASP THR ILE LYS SEQRES 11 B 165 GLU GLU VAL PRO ALA ASP MET TRP SER PRO ALA MET LYS SEQRES 12 B 165 SER ALA TRP SER GLU ALA TYR ASP HIS LEU VAL ALA ALA SEQRES 13 B 165 ILE LYS GLN GLU MET LYS PRO ALA GLU HET HEM A 166 43 HET HEM B 166 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *97(H2 O) HELIX 1 1 SER A 14 LYS A 29 1 16 HELIX 2 2 ASP A 31 ALA A 47 1 17 HELIX 3 3 ALA A 47 GLN A 52 1 6 HELIX 4 4 ASN A 67 GLY A 92 1 26 HELIX 5 5 ARG A 97 LYS A 110 1 14 HELIX 6 6 GLY A 114 VAL A 133 1 20 HELIX 7 7 SER A 139 GLN A 159 1 21 HELIX 8 8 SER B 14 ASP B 31 1 18 HELIX 9 9 ASP B 31 LEU B 41 1 11 HELIX 10 10 LYS B 42 ALA B 47 1 6 HELIX 11 11 PRO B 48 MET B 53 5 6 HELIX 12 12 ASN B 67 ALA B 91 1 25 HELIX 13 13 ARG B 97 TYR B 111 1 15 HELIX 14 14 GLY B 114 VAL B 133 1 20 HELIX 15 15 SER B 139 GLN B 159 1 21 LINK NE2 HIS A 73 FE HEM A 166 1555 1555 2.07 LINK NE2 HIS A 108 FE HEM A 166 1555 1555 2.27 LINK NE2 HIS B 73 FE HEM B 166 1555 1555 2.31 LINK NE2 HIS B 108 FE HEM B 166 1555 1555 2.20 SITE 1 AC1 15 MET A 53 PHE A 54 LYS A 69 HIS A 73 SITE 2 AC1 15 SER A 76 VAL A 77 ARG A 103 LEU A 104 SITE 3 AC1 15 HIS A 108 TYR A 111 VAL A 113 HIS A 117 SITE 4 AC1 15 PHE A 118 VAL A 121 VAL A 154 SITE 1 AC2 15 MET B 53 LYS B 69 HIS B 73 VAL B 77 SITE 2 AC2 15 ARG B 103 LEU B 104 THR B 107 HIS B 108 SITE 3 AC2 15 TYR B 111 VAL B 113 HIS B 117 PHE B 118 SITE 4 AC2 15 VAL B 121 LEU B 153 VAL B 154 CRYST1 125.677 125.677 56.725 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007957 0.004594 0.000000 0.00000 SCALE2 0.000000 0.009188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017629 0.00000