HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-APR-06 2GOW TITLE SOLUTION STRUCTURE OF BC059385 FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HCG-1 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBL3; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEU-HIS; SOURCE 9 OTHER_DETAILS: WHEAT GERM CELL-FREE, IN VITRO EXPRESSION KEYWDS BC059385, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.F.VOLKMAN,N.B.DE LA CRUZ,B.L.LYTLE,F.C.PETERSON,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 09-MAR-22 2GOW 1 REMARK SEQADV REVDAT 4 29-SEP-09 2GOW 1 JRNL REVDAT 3 24-FEB-09 2GOW 1 VERSN REVDAT 2 29-APR-08 2GOW 1 SOURCE REVDAT 1 25-APR-06 2GOW 0 JRNL AUTH N.B.DE LA CRUZ,F.C.PETERSON,B.L.LYTLE,B.F.VOLKMAN JRNL TITL SOLUTION STRUCTURE OF A MEMBRANE-ANCHORED UBIQUITIN-FOLD JRNL TITL 2 (MUB) PROTEIN FROM HOMO SAPIENS. JRNL REF PROTEIN SCI. V. 16 1479 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17567738 JRNL DOI 10.1110/PS.072834007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : BRUKER (XWINNMR), SCHWIETERS, C.D., KUSZEWSKI, REMARK 3 J.J., TJANDRA, N., CLORE, G.M. (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 STRUCTURES ARE BASED ON A TOTAL OF 1144 NOE CONSTRAINTS ( 294 REMARK 3 INTRA, 141 SEQUENTIAL, 216 MEDIUM AND 493 LONG RANGE CONSTRAINTS) REMARK 3 AND 115 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2GOW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037378. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 106 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM BC059385 U-15N/13C, 10 MM REMARK 210 DEUTERATED SODIUM ACETATE, 100 REMARK 210 MM NACL, 2 MM DITHIOTHREITOL, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2004, XEASY 1.3, SPSCAN REMARK 210 1.1.0, GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED FOR REMARK 210 BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 REMARK: ALL TRIPLE-RESONANCE AND NOESY SPECTRA REMARK 210 WERE ACQUIRED USING A CRYOGENIC PROBE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LEU A 0 REMARK 465 GLU A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 37 OE2 GLU A 96 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 4 108.83 68.27 REMARK 500 1 ASP A 41 -86.88 -167.26 REMARK 500 1 MET A 45 -60.07 -95.45 REMARK 500 1 ASP A 46 75.59 -154.44 REMARK 500 1 TRP A 47 86.94 57.39 REMARK 500 1 SER A 53 114.23 81.07 REMARK 500 1 TYR A 62 50.27 -100.91 REMARK 500 1 GLN A 63 93.50 60.69 REMARK 500 1 HIS A 68 -175.62 -173.82 REMARK 500 1 ASN A 70 28.08 -167.64 REMARK 500 1 LYS A 77 79.55 71.28 REMARK 500 1 GLU A 96 109.43 66.74 REMARK 500 1 ASN A 98 15.71 -147.08 REMARK 500 1 SER A 111 100.10 67.00 REMARK 500 1 ILE A 116 80.21 -165.73 REMARK 500 2 SER A 3 16.05 -149.18 REMARK 500 2 ASP A 41 106.18 -177.41 REMARK 500 2 ASN A 42 -116.22 65.09 REMARK 500 2 GLU A 49 103.24 -161.19 REMARK 500 2 VAL A 52 -39.39 78.11 REMARK 500 2 SER A 53 97.86 66.16 REMARK 500 2 TYR A 62 75.59 -101.30 REMARK 500 2 GLN A 63 85.68 36.78 REMARK 500 2 ASN A 70 28.16 -175.72 REMARK 500 2 ASN A 98 76.90 -168.05 REMARK 500 2 SER A 99 28.04 45.87 REMARK 500 2 THR A 108 -23.53 -158.61 REMARK 500 3 ASN A 4 115.53 69.43 REMARK 500 3 ASP A 8 -28.18 -169.11 REMARK 500 3 ASP A 41 -74.59 -177.15 REMARK 500 3 PRO A 44 96.40 -58.56 REMARK 500 3 ASP A 46 -165.50 -169.66 REMARK 500 3 TRP A 47 -84.98 -108.99 REMARK 500 3 GLU A 49 -60.07 -154.09 REMARK 500 3 GLN A 51 94.14 66.87 REMARK 500 3 TYR A 62 60.87 -101.32 REMARK 500 3 ASN A 70 39.12 -160.22 REMARK 500 3 GLU A 106 101.18 70.53 REMARK 500 3 LYS A 107 -59.11 72.22 REMARK 500 4 ASP A 8 -28.41 -170.65 REMARK 500 4 ASP A 41 -74.06 -135.25 REMARK 500 4 MET A 45 -75.25 -126.41 REMARK 500 4 ASP A 46 89.09 177.13 REMARK 500 4 GLU A 49 -91.50 56.65 REMARK 500 4 GLN A 51 -52.93 -169.50 REMARK 500 4 SER A 53 110.71 65.90 REMARK 500 4 GLN A 63 -64.94 69.55 REMARK 500 4 ASN A 70 80.36 177.88 REMARK 500 4 ASN A 98 79.97 178.54 REMARK 500 4 SER A 99 -36.06 64.21 REMARK 500 REMARK 500 THIS ENTRY HAS 302 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.35156 RELATED DB: TARGETDB DBREF 2GOW A 2 117 UNP O95164 UBL3_HUMAN 2 117 SEQADV 2GOW GLY A -7 UNP O95164 CLONING ARTIFACT SEQADV 2GOW HIS A -6 UNP O95164 EXPRESSION TAG SEQADV 2GOW HIS A -5 UNP O95164 EXPRESSION TAG SEQADV 2GOW HIS A -4 UNP O95164 EXPRESSION TAG SEQADV 2GOW HIS A -3 UNP O95164 EXPRESSION TAG SEQADV 2GOW HIS A -2 UNP O95164 EXPRESSION TAG SEQADV 2GOW HIS A -1 UNP O95164 EXPRESSION TAG SEQADV 2GOW LEU A 0 UNP O95164 CLONING ARTIFACT SEQADV 2GOW GLU A 1 UNP O95164 CLONING ARTIFACT SEQRES 1 A 125 GLY HIS HIS HIS HIS HIS HIS LEU GLU SER SER ASN VAL SEQRES 2 A 125 PRO ALA ASP MET ILE ASN LEU ARG LEU ILE LEU VAL SER SEQRES 3 A 125 GLY LYS THR LYS GLU PHE LEU PHE SER PRO ASN ASP SER SEQRES 4 A 125 ALA SER ASP ILE ALA LYS HIS VAL TYR ASP ASN TRP PRO SEQRES 5 A 125 MET ASP TRP GLU GLU GLU GLN VAL SER SER PRO ASN ILE SEQRES 6 A 125 LEU ARG LEU ILE TYR GLN GLY ARG PHE LEU HIS GLY ASN SEQRES 7 A 125 VAL THR LEU GLY ALA LEU LYS LEU PRO PHE GLY LYS THR SEQRES 8 A 125 THR VAL MET HIS LEU VAL ALA ARG GLU THR LEU PRO GLU SEQRES 9 A 125 PRO ASN SER GLN GLY GLN ARG ASN ARG GLU LYS THR GLY SEQRES 10 A 125 GLU SER ASN CYS CYS VAL ILE LEU HELIX 1 1 SER A 31 ASP A 41 1 11 HELIX 2 2 SER A 54 ASN A 56 5 3 HELIX 3 3 LEU A 73 LYS A 77 5 5 SHEET 1 A 4 THR A 21 PHE A 26 0 SHEET 2 A 4 ILE A 10 ILE A 15 -1 N LEU A 14 O LYS A 22 SHEET 3 A 4 THR A 83 ALA A 90 1 O THR A 84 N ASN A 11 SHEET 4 A 4 LEU A 58 ILE A 61 -1 N ILE A 61 O HIS A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1