data_2GOZ # _entry.id 2GOZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2GOZ NDB UR0084 RCSB RCSB037381 WWPDB D_1000037381 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2012-12-12 _pdbx_database_PDB_obs_spr.pdb_id 3ZD5 _pdbx_database_PDB_obs_spr.replace_pdb_id 2GOZ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2GOZ _pdbx_database_status.recvd_initial_deposition_date 2006-04-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martick, M.' 1 'Scott, W.G.' 2 # _citation.id primary _citation.title 'Tertiary Contacts Distant from the Active Site Prime a Ribozyme for Catalysis.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 126 _citation.page_first 309 _citation.page_last 320 _citation.year 2006 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16859740 _citation.pdbx_database_id_DOI 10.1016/j.cell.2006.06.036 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Martick, M.' 1 primary 'Scott, W.G.' 2 # _cell.entry_id 2GOZ _cell.length_a 49.886 _cell.length_b 69.210 _cell.length_c 60.076 _cell.angle_alpha 90.00 _cell.angle_beta 111.83 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GOZ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Ribozyme 13941.326 1 ? ? ? ? 2 polymer syn "5'-R(*GP*GP*CP*GP*UP*(OMC)P*CP*UP*GP*GP*(5BU)P*AP*UP*CP*CP*AP*AP*(5BU)P*CP*(DC))-3'" 6491.608 1 ? ? ? ? 3 water nat water 18.015 73 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GDP)GAUGUACUACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCC' GGAUGUACUACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCC A ? 2 polyribonucleotide no yes 'GGCGU(OMC)CUGG(5BU)AUCCAA(5BU)C(DC)' GGCGUCCUGGUAUCCAAUCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GDP n 1 2 G n 1 3 A n 1 4 U n 1 5 G n 1 6 U n 1 7 A n 1 8 C n 1 9 U n 1 10 A n 1 11 C n 1 12 C n 1 13 A n 1 14 G n 1 15 C n 1 16 U n 1 17 G n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 G n 1 23 U n 1 24 C n 1 25 C n 1 26 C n 1 27 A n 1 28 A n 1 29 A n 1 30 U n 1 31 A n 1 32 G n 1 33 G n 1 34 A n 1 35 C n 1 36 G n 1 37 A n 1 38 A n 1 39 A n 1 40 C n 1 41 G n 1 42 C n 1 43 C n 2 1 G n 2 2 G n 2 3 C n 2 4 G n 2 5 U n 2 6 OMC n 2 7 C n 2 8 U n 2 9 G n 2 10 G n 2 11 5BU n 2 12 A n 2 13 U n 2 14 C n 2 15 C n 2 16 A n 2 17 A n 2 18 5BU n 2 19 C n 2 20 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'enzyme strand was obtained by T7 RNA transcription' 2 1 sample ? ? ? ? ? 'substrate strand was obtained by Solid-phase chemical synthesis' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 2GOZ 2GOZ ? ? ? 2 2 PDB 2GOZ 2GOZ ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GOZ A 1 ? 43 ? 2GOZ 1 ? 43 ? 1 43 2 2 2GOZ B 1 ? 20 ? 2GOZ 1 ? 20 ? 1 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2GOZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details ;The enzyme and substrate were mixed in equimolar amounts in a solution containing 50 mM MES pH 5.5, 1.5 mM EDTA. The complex was formed by incubating the mixture at 95C for 2 min., then at 65C for 2 min., and finally at 27C for 5 min. 1 mM MgCl2 was included in the mixture before the final incubation step. A 10 mg/ml concentration of RNA was used for the crystallization experiments. The reservoir solution contained 0.5M (NH4)2SO4, 100 mM MES pH 6.5, and 35% PEG 3350. After mixing the reservoir solution, the salt and PEG phases were allowed to separate, and only the salt phase was used for the drops. The crystals grew in hanging drops of 2 microliters after 12 months of incubation at 28C. The crystals were washed in the salt phase of the reservoir solution prior to cryo-freezing. ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MES ? ? ? 1 2 1 EDTA ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 H2O ? ? ? 1 5 2 '(NH4)2SO4' ? ? ? 1 6 2 MES ? ? ? 1 7 2 PEG ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.919 1.0 2 0.920 1.0 3 0.9266 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.919, 0.920, 0.9266' # _reflns.entry_id 2GOZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 55.73 _reflns.d_resolution_high 2.2 _reflns.number_obs 8688 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 16.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.217 _reflns_shell.pdbx_Rsym_value 0.295 _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2GOZ _refine.ls_number_reflns_obs 8688 _refine.ls_number_reflns_all 8688 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 55.73 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.08 _refine.ls_R_factor_obs 0.19644 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19125 _refine.ls_R_factor_R_free 0.24107 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 935 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 45.489 _refine.aniso_B[1][1] -0.02 _refine.aniso_B[2][2] 1.00 _refine.aniso_B[3][3] -2.60 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -2.18 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'INITIAL REFINEMENT IN CNS (SIMULATED ANNEALING MOLECULAR DYNAMICS) FOLLOWED BY POSITIONAL AND TLS REFINEMENT IN REFMAC.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.300 _refine.pdbx_overall_ESU_R_Free 0.222 _refine.overall_SU_ML 0.166 _refine.overall_SU_B 12.589 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2GOZ _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.225 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1346 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 1419 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 55.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 1503 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.676 3.000 ? 2331 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.076 0.200 ? 312 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 649 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.165 0.200 ? 572 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.277 0.200 ? 913 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.161 0.200 ? 100 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.127 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.164 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.014 1.500 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.204 3.000 ? 2111 'X-RAY DIFFRACTION' ? r_scangle_it 1.628 4.500 ? 2331 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 655 _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.304 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GOZ _struct.title 'The 2.2 A structure of a full-length catalytically active hammerhead ribozyme' _struct.pdbx_descriptor Ribozyme _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GOZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;catalytic RNA, ribozyme, in-line attack, hammerhead ribozyme, hammerhead RNA, stem-loop interaction, uridine turn, A-form helix, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ;Asymmetric unit contains one enzyme and one substrate strand of the hammerhead ribozyme. There is one enzyme-substrate complex in the asymmetric unit. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B U 5 "O3'" ? ? ? 1_555 B OMC 6 P ? ? B U 5 B OMC 6 1_555 ? ? ? ? ? ? ? 1.606 ? covale2 covale ? ? B OMC 6 "O3'" ? ? ? 1_555 B C 7 P ? ? B OMC 6 B C 7 1_555 ? ? ? ? ? ? ? 1.594 ? covale3 covale ? ? A GDP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GDP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.595 ? covale4 covale ? ? B G 10 "O3'" ? ? ? 1_555 B 5BU 11 P ? ? B G 10 B 5BU 11 1_555 ? ? ? ? ? ? ? 1.604 ? covale5 covale ? ? B 5BU 11 "O3'" ? ? ? 1_555 B A 12 P ? ? B 5BU 11 B A 12 1_555 ? ? ? ? ? ? ? 1.596 ? covale6 covale ? ? B A 17 "O3'" ? ? ? 1_555 B 5BU 18 P ? ? B A 17 B 5BU 18 1_555 ? ? ? ? ? ? ? 1.603 ? covale7 covale ? ? B 5BU 18 "O3'" ? ? ? 1_555 B C 19 P ? ? B 5BU 18 B C 19 1_555 ? ? ? ? ? ? ? 1.595 ? hydrog1 hydrog ? ? A GDP 1 N1 ? ? ? 1_555 B DC 20 N3 ? ? A GDP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A GDP 1 N2 ? ? ? 1_555 B DC 20 O2 ? ? A GDP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A GDP 1 O6 ? ? ? 1_555 B DC 20 N4 ? ? A GDP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B 5BU 18 N3 ? ? A A 3 B 5BU 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B 5BU 18 O4 ? ? A A 3 B 5BU 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B C 15 N4 ? ? A U 4 B C 15 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? hydrog10 hydrog ? ? A U 4 O2 ? ? ? 1_555 B A 17 N6 ? ? A U 4 B A 17 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 28 N7 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 A A 28 N6 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 A C 26 O2 ? ? A C 8 A C 26 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 9 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 9 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 B 5BU 11 N3 ? ? A A 10 B 5BU 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 B 5BU 11 O4 ? ? A A 10 B 5BU 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A A 13 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 13 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 13 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 38 N1 ? ? A G 17 A A 38 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog36 hydrog ? ? A A 21 N6 ? ? ? 1_555 A G 36 N3 ? ? A A 21 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog37 hydrog ? ? A A 21 N7 ? ? ? 1_555 A G 36 N2 ? ? A A 21 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog38 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 23 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 23 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A A 31 N6 ? ? ? 1_555 B U 13 O2 ? ? A A 31 B U 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog50 hydrog ? ? A A 31 N7 ? ? ? 1_555 B U 13 N3 ? ? A A 31 B U 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog51 hydrog ? ? A A 37 N6 ? ? ? 1_555 B OMC 6 O2 ? ? A A 37 B OMC 6 1_555 ? ? ? ? ? ? 'A-OMC MISPAIR' ? ? hydrog52 hydrog ? ? A A 38 N6 ? ? ? 1_555 B OMC 6 O2 ? ? A A 38 B OMC 6 1_555 ? ? ? ? ? ? 'A-OMC MISPAIR' ? ? hydrog53 hydrog ? ? A A 39 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 39 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A A 39 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 39 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A C 40 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? A C 40 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? A C 40 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A C 42 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A C 42 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A C 42 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A C 43 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A C 43 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A C 43 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 2GOZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GOZ _atom_sites.fract_transf_matrix[1][1] 0.020046 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008030 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014449 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017931 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GDP 1 1 1 GDP GDP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 U 23 23 23 U U A . n A 1 24 C 24 24 24 C C A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 U 30 30 30 U U A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 C 3 3 3 C C B . n B 2 4 G 4 4 4 G G B . n B 2 5 U 5 5 5 U U B . n B 2 6 OMC 6 6 6 OMC OMC B . n B 2 7 C 7 7 7 C C B . n B 2 8 U 8 8 8 U U B . n B 2 9 G 9 9 9 G G B . n B 2 10 G 10 10 10 G G B . n B 2 11 5BU 11 11 11 5BU 5BU B . n B 2 12 A 12 12 12 A A B . n B 2 13 U 13 13 13 U U B . n B 2 14 C 14 14 14 C C B . n B 2 15 C 15 15 15 C C B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 5BU 18 18 18 5BU 5BU B . n B 2 19 C 19 19 19 C C B . n B 2 20 DC 20 20 20 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 44 4 HOH HOH A . C 3 HOH 2 45 5 HOH HOH A . C 3 HOH 3 46 6 HOH HOH A . C 3 HOH 4 47 9 HOH HOH A . C 3 HOH 5 48 13 HOH HOH A . C 3 HOH 6 49 14 HOH HOH A . C 3 HOH 7 50 16 HOH HOH A . C 3 HOH 8 51 17 HOH HOH A . C 3 HOH 9 52 18 HOH HOH A . C 3 HOH 10 53 19 HOH HOH A . C 3 HOH 11 54 21 HOH HOH A . C 3 HOH 12 55 22 HOH HOH A . C 3 HOH 13 56 24 HOH HOH A . C 3 HOH 14 57 27 HOH HOH A . C 3 HOH 15 58 28 HOH HOH A . C 3 HOH 16 59 30 HOH HOH A . C 3 HOH 17 60 31 HOH HOH A . C 3 HOH 18 61 32 HOH HOH A . C 3 HOH 19 62 35 HOH HOH A . C 3 HOH 20 63 37 HOH HOH A . C 3 HOH 21 64 38 HOH HOH A . C 3 HOH 22 65 39 HOH HOH A . C 3 HOH 23 66 40 HOH HOH A . C 3 HOH 24 67 41 HOH HOH A . C 3 HOH 25 68 44 HOH HOH A . C 3 HOH 26 69 45 HOH HOH A . C 3 HOH 27 70 47 HOH HOH A . C 3 HOH 28 71 50 HOH HOH A . C 3 HOH 29 72 51 HOH HOH A . C 3 HOH 30 73 54 HOH HOH A . C 3 HOH 31 74 59 HOH HOH A . C 3 HOH 32 75 61 HOH HOH A . C 3 HOH 33 76 62 HOH HOH A . C 3 HOH 34 77 64 HOH HOH A . C 3 HOH 35 78 68 HOH HOH A . C 3 HOH 36 79 73 HOH HOH A . C 3 HOH 37 80 77 HOH HOH A . C 3 HOH 38 81 79 HOH HOH A . C 3 HOH 39 82 80 HOH HOH A . C 3 HOH 40 83 90 HOH HOH A . C 3 HOH 41 84 94 HOH HOH A . C 3 HOH 42 85 95 HOH HOH A . D 3 HOH 1 21 2 HOH HOH B . D 3 HOH 2 22 3 HOH HOH B . D 3 HOH 3 23 7 HOH HOH B . D 3 HOH 4 24 8 HOH HOH B . D 3 HOH 5 25 10 HOH HOH B . D 3 HOH 6 26 11 HOH HOH B . D 3 HOH 7 27 12 HOH HOH B . D 3 HOH 8 28 20 HOH HOH B . D 3 HOH 9 29 23 HOH HOH B . D 3 HOH 10 30 26 HOH HOH B . D 3 HOH 11 31 29 HOH HOH B . D 3 HOH 12 32 33 HOH HOH B . D 3 HOH 13 33 34 HOH HOH B . D 3 HOH 14 34 36 HOH HOH B . D 3 HOH 15 35 42 HOH HOH B . D 3 HOH 16 36 43 HOH HOH B . D 3 HOH 17 37 48 HOH HOH B . D 3 HOH 18 38 49 HOH HOH B . D 3 HOH 19 39 53 HOH HOH B . D 3 HOH 20 40 55 HOH HOH B . D 3 HOH 21 41 63 HOH HOH B . D 3 HOH 22 42 65 HOH HOH B . D 3 HOH 23 43 67 HOH HOH B . D 3 HOH 24 44 71 HOH HOH B . D 3 HOH 25 45 74 HOH HOH B . D 3 HOH 26 46 76 HOH HOH B . D 3 HOH 27 47 78 HOH HOH B . D 3 HOH 28 48 82 HOH HOH B . D 3 HOH 29 49 87 HOH HOH B . D 3 HOH 30 50 91 HOH HOH B . D 3 HOH 31 51 97 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GDP 1 A GDP 1 ? G "GUANOSINE-5'-DIPHOSPHATE" 2 B OMC 6 B OMC 6 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 3 B 5BU 11 B 5BU 11 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 4 B 5BU 18 B 5BU 18 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-18 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 4 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Other # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -9.3823 19.2084 11.7297 0.0850 -0.1945 -0.1772 -0.1019 -0.0033 -0.0117 6.9290 5.0582 10.4140 0.4236 -4.4986 -4.9304 -0.2006 -0.4487 0.0102 -0.2611 0.1504 0.2384 1.5002 -0.2816 0.0501 'X-RAY DIFFRACTION' 2 ? refined -11.1244 16.4079 -3.9990 -0.1438 -0.1555 0.0112 0.0006 -0.0371 0.0109 6.5940 9.4662 3.1205 7.8537 2.5967 3.5779 -0.1176 -0.3485 -0.3489 -0.9745 -0.0243 -0.0780 -0.3817 -0.0125 0.1420 'X-RAY DIFFRACTION' 3 ? refined -11.6659 -1.9395 -12.7416 -0.2050 -0.1130 0.0385 0.0038 0.1039 0.0477 3.3687 5.7353 4.5081 -1.9915 -0.3927 -0.0015 0.1391 0.5008 -0.0143 -0.5279 0.1728 -1.0389 -0.2495 0.2455 -0.3119 'X-RAY DIFFRACTION' 4 ? refined -19.4754 2.4495 -24.6268 -0.0343 0.1039 -0.0382 -0.0893 0.0925 0.0669 8.6938 4.5079 8.1578 -4.8520 4.8722 -0.2463 -0.2732 0.6080 0.1671 0.2533 -0.0124 0.1956 -0.6583 1.0485 0.2856 'X-RAY DIFFRACTION' 5 ? refined -16.9841 19.9494 -17.7619 0.1960 0.0495 0.2716 -0.1744 -0.0888 0.0239 4.4483 10.0299 26.6559 -5.1430 -5.8445 7.4700 -0.1153 0.4961 0.7629 -0.9904 0.6769 -1.3833 -1.0628 -0.3980 -0.5616 'X-RAY DIFFRACTION' 6 ? refined -18.1838 14.4674 -0.5890 -0.0903 0.0826 0.0571 -0.0835 0.0266 -0.0299 12.1397 3.5750 2.2987 -0.0512 -2.0815 2.6435 0.0741 -1.0949 -0.0408 0.4130 -0.3860 0.7514 -0.2262 -0.5808 0.3119 'X-RAY DIFFRACTION' 7 ? refined -24.7594 17.2664 -15.2982 0.0368 0.0282 0.0791 0.0284 -0.1161 -0.0382 3.8458 5.3263 22.0066 0.1924 0.8753 -5.3176 0.1284 -0.1763 0.0388 0.0269 0.1589 0.0083 -1.8585 -0.1757 -0.2873 'X-RAY DIFFRACTION' 8 ? refined -21.7379 14.7452 -28.9789 0.3529 0.0963 0.2623 -0.0359 -0.0203 0.1195 1.5030 0.9902 11.0977 0.8927 2.2560 3.2234 -0.0229 0.9348 0.3863 -0.6170 0.6314 -0.7774 -1.5357 -0.9727 -0.6086 'X-RAY DIFFRACTION' 9 ? refined -31.7736 8.0207 -32.8753 0.0710 0.0848 -0.0821 0.0057 0.0131 0.0490 10.1511 8.2911 1.0693 -3.0554 3.2315 -1.5192 -0.0094 0.3757 -0.7339 -0.2585 -0.0109 0.0080 -0.0971 0.6021 0.0203 'X-RAY DIFFRACTION' 10 ? refined -33.2998 14.7443 -28.6781 0.1512 -0.0760 -0.1526 -0.0542 -0.0033 0.0616 1.2850 0.1141 2.9908 -0.2687 1.0762 -0.3671 0.0249 -0.3450 -0.1283 0.1946 0.0412 -0.1532 -0.6544 0.3985 -0.0661 'X-RAY DIFFRACTION' 11 ? refined -26.3416 10.5389 -20.2912 0.1225 -0.0622 0.0577 -0.0408 -0.1487 -0.0030 37.6593 8.1110 64.3114 -17.2270 13.4577 -9.8609 -3.3709 0.3761 1.3001 0.5435 1.3227 -1.1983 0.0715 -1.0095 2.0482 'X-RAY DIFFRACTION' 12 ? refined -18.4438 -0.3707 -9.2215 -0.1004 -0.1445 0.0275 -0.0244 0.0608 0.0222 4.0675 2.1756 5.6136 0.1754 4.2291 0.0975 0.1975 0.0792 0.1961 0.0698 -0.0874 -0.0937 -0.3052 -0.1454 -0.1101 'X-RAY DIFFRACTION' 13 ? refined -10.7369 7.7605 2.3231 -0.0176 -0.1274 0.1002 -0.1353 0.0089 0.0201 10.3607 49.6366 2.1996 22.6775 4.7738 10.4489 0.2100 -0.2457 -0.7906 0.7475 -0.5886 -1.9068 0.4057 -0.5982 0.3786 'X-RAY DIFFRACTION' 14 ? refined -1.6466 15.6044 3.7331 -0.0308 -0.1778 0.1586 -0.0006 -0.0689 0.0002 26.3842 10.3730 16.6691 15.5528 -1.4154 -5.3060 0.5634 0.2285 -1.4916 -0.9344 -0.2946 -0.6315 0.2418 -0.0228 -0.2688 'X-RAY DIFFRACTION' 15 ? refined -0.7846 23.5662 11.1255 -0.0409 -0.1330 -0.0776 0.0196 0.0194 0.0290 7.5963 6.6774 4.7628 -1.7910 -2.5293 4.3561 -0.1070 -0.1705 -0.0080 0.5373 0.3716 -0.5499 0.5465 0.1245 -0.2646 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 4 A 4 ? 'X-RAY DIFFRACTION' ? 2 2 A 5 A 5 A 9 A 9 ? 'X-RAY DIFFRACTION' ? 3 3 A 10 A 10 A 14 A 14 ? 'X-RAY DIFFRACTION' ? 4 4 A 15 A 15 A 20 A 20 ? 'X-RAY DIFFRACTION' ? 5 5 A 21 A 21 A 25 A 25 ? 'X-RAY DIFFRACTION' ? 6 6 A 26 A 26 A 31 A 31 ? 'X-RAY DIFFRACTION' ? 7 7 A 32 A 32 A 36 A 36 ? 'X-RAY DIFFRACTION' ? 8 8 A 37 A 37 A 38 A 38 ? 'X-RAY DIFFRACTION' ? 9 9 A 39 A 39 A 43 A 43 ? 'X-RAY DIFFRACTION' ? 10 10 B 1 B 1 B 5 B 5 ? 'X-RAY DIFFRACTION' ? 11 11 B 6 B 6 B 6 B 6 ? 'X-RAY DIFFRACTION' ? 12 12 B 7 B 7 B 12 B 12 ? 'X-RAY DIFFRACTION' ? 13 13 B 13 B 13 B 14 B 14 ? 'X-RAY DIFFRACTION' ? 14 14 B 15 B 15 B 16 B 16 ? 'X-RAY DIFFRACTION' ? 15 15 B 17 B 17 B 20 B 20 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data reduction' . ? 2 MOSFLM 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 14 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 14 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.362 _pdbx_validate_rmsd_bond.bond_target_value 1.420 _pdbx_validate_rmsd_bond.bond_deviation -0.058 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.94 108.50 4.44 0.70 N 2 1 C5 A C 8 ? ? C6 A C 8 ? ? N1 A C 8 ? ? 117.39 121.00 -3.61 0.50 N 3 1 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 113.03 108.50 4.53 0.70 N 4 1 "O5'" A G 14 ? ? "C5'" A G 14 ? ? "C4'" A G 14 ? ? 103.36 109.40 -6.04 0.80 N 5 1 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.04 108.50 4.54 0.70 N 6 1 "O4'" A C 26 ? ? "C1'" A C 26 ? ? N1 A C 26 ? ? 113.58 108.50 5.08 0.70 N 7 1 "C3'" A A 28 ? ? "O3'" A A 28 ? ? P A A 29 ? ? 130.64 119.70 10.94 1.20 Y 8 1 "O4'" A A 31 ? ? "C1'" A A 31 ? ? N9 A A 31 ? ? 113.38 108.50 4.88 0.70 N 9 1 "C5'" A G 32 ? ? "C4'" A G 32 ? ? "O4'" A G 32 ? ? 116.28 109.80 6.48 0.90 N 10 1 "C4'" A G 32 ? ? "C3'" A G 32 ? ? "C2'" A G 32 ? ? 95.51 102.60 -7.09 1.00 N 11 1 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 112.71 108.50 4.21 0.70 N 12 1 "O4'" B G 10 ? ? "C1'" B G 10 ? ? N9 B G 10 ? ? 112.83 108.50 4.33 0.70 N 13 1 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.33 108.50 5.83 0.70 N 14 1 "O4'" B C 15 ? ? "C1'" B C 15 ? ? N1 B C 15 ? ? 116.40 108.50 7.90 0.70 N 15 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.70 108.30 3.40 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2GOZ 'double helix' 2GOZ 'a-form double helix' 2GOZ 'hairpin loop' 2GOZ 'mismatched base pair' 2GOZ 'triple helix' 2GOZ 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GDP 1 1_555 B DC 20 1_555 -0.545 -0.080 -0.024 -5.271 -6.318 5.391 1 A_GDP1:DC20_B A 1 ? B 20 ? 19 1 1 A G 2 1_555 B C 19 1_555 -0.176 -0.367 -0.213 -10.685 -9.271 -1.740 2 A_G2:C19_B A 2 ? B 19 ? 19 1 1 A A 3 1_555 B 5BU 18 1_555 0.134 -0.008 0.184 -6.673 -7.779 2.139 3 A_A3:5BU18_B A 3 ? B 18 ? 20 1 1 A U 4 1_555 B C 15 1_555 -0.890 -0.163 -1.086 -6.772 -9.844 -38.812 4 A_U4:C15_B A 4 ? B 15 ? ? ? 1 A G 5 1_555 B C 14 1_555 0.000 -0.305 0.409 3.017 -11.992 -3.575 5 A_G5:C14_B A 5 ? B 14 ? 19 1 1 A U 6 1_555 A A 28 1_555 4.059 -2.017 -0.073 -12.666 -4.945 -94.275 6 A_U6:A28_A A 6 ? A 28 ? 24 4 1 A A 31 1_555 B U 13 1_555 -4.267 -2.463 -0.018 -11.671 3.141 -94.074 7 A_A31:U13_B A 31 ? B 13 ? 24 4 1 A U 9 1_555 B A 12 1_555 -0.124 -0.073 0.530 7.901 -11.907 2.625 8 A_U9:A12_B A 9 ? B 12 ? 20 1 1 A A 10 1_555 B 5BU 11 1_555 -0.081 -0.187 0.151 16.183 -16.698 5.250 9 A_A10:5BU11_B A 10 ? B 11 ? 20 1 1 A C 11 1_555 B G 10 1_555 0.393 -0.155 -0.116 13.254 -19.240 2.976 10 A_C11:G10_B A 11 ? B 10 ? 19 1 1 A C 12 1_555 B G 9 1_555 0.424 -0.190 -0.226 -2.000 -10.173 0.778 11 A_C12:G9_B A 12 ? B 9 ? 19 1 1 A A 13 1_555 B U 8 1_555 0.047 -0.236 0.120 -7.233 -13.787 1.965 12 A_A13:U8_B A 13 ? B 8 ? 20 1 1 A G 14 1_555 B C 7 1_555 0.020 -0.070 0.390 -1.731 -11.942 4.697 13 A_G14:C7_B A 14 ? B 7 ? 19 1 1 A C 15 1_555 A G 20 1_555 0.875 -0.415 0.270 8.321 -4.765 -3.128 14 A_C15:G20_A A 15 ? A 20 ? 19 1 1 A C 8 1_555 A C 26 1_555 -4.698 -2.501 -0.277 7.329 -7.300 -103.275 15 A_C8:C26_A A 8 ? A 26 ? ? 4 1 A G 32 1_555 A C 25 1_555 -0.269 -0.351 0.147 -3.092 -10.677 -2.325 16 A_G32:C25_A A 32 ? A 25 ? 19 1 1 A G 33 1_555 A C 24 1_555 -1.121 -0.518 0.195 -0.572 -9.990 2.343 17 A_G33:C24_A A 33 ? A 24 ? 19 1 1 A A 34 1_555 A U 23 1_555 0.500 -0.212 -0.425 -6.069 -16.965 -6.736 18 A_A34:U23_A A 34 ? A 23 ? 20 1 1 A C 35 1_555 A G 22 1_555 0.551 -0.218 -0.012 -0.556 -13.353 0.914 19 A_C35:G22_A A 35 ? A 22 ? 19 1 1 A G 36 1_555 A A 21 1_555 6.539 -3.592 0.445 -7.714 -13.914 2.324 20 A_G36:A21_A A 36 ? A 21 ? 11 9 1 A A 37 1_555 B OMC 6 1_555 -6.183 -2.414 -0.639 -15.469 3.888 -51.373 21 A_A37:OMC6_B A 37 ? B 6 ? ? ? 1 A A 38 1_555 A G 17 1_555 -3.984 3.414 0.087 39.885 -41.671 82.541 22 A_A38:G17_A A 38 ? A 17 ? ? ? 1 A A 39 1_555 B U 5 1_555 0.075 -0.083 0.549 11.123 -8.962 2.577 23 A_A39:U5_B A 39 ? B 5 ? 20 1 1 A C 40 1_555 B G 4 1_555 0.237 -0.211 -0.231 13.904 -19.933 0.837 24 A_C40:G4_B A 40 ? B 4 ? 19 1 1 A G 41 1_555 B C 3 1_555 -0.411 -0.308 0.067 -4.332 -17.951 1.046 25 A_G41:C3_B A 41 ? B 3 ? 19 1 1 A C 42 1_555 B G 2 1_555 0.361 -0.126 0.437 -13.910 -11.368 3.751 26 A_C42:G2_B A 42 ? B 2 ? 19 1 1 A C 43 1_555 B G 1 1_555 0.549 -0.259 0.064 6.145 -6.946 1.133 27 A_C43:G1_B A 43 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GDP 1 1_555 B DC 20 1_555 A G 2 1_555 B C 19 1_555 -0.715 -2.093 3.495 0.476 3.236 31.217 -4.499 1.415 3.256 5.993 -0.881 31.383 1 AA_GDP1G2:C19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A G 2 1_555 B C 19 1_555 A A 3 1_555 B 5BU 18 1_555 -0.089 -1.466 3.197 -1.988 3.266 34.062 -2.979 -0.148 3.048 5.554 3.381 34.270 2 AA_G2A3:5BU18C19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A A 3 1_555 B 5BU 18 1_555 A U 4 1_555 B C 15 1_555 3.040 -1.305 4.236 -2.178 10.199 67.257 -1.654 -2.823 3.938 9.152 1.954 67.966 3 AA_A3U4:C155BU18_BB A 3 ? B 18 ? A 4 ? B 15 ? 1 A U 4 1_555 B C 15 1_555 A G 5 1_555 B C 14 1_555 1.812 -1.661 3.094 -11.941 10.142 33.504 -3.707 -4.137 1.806 16.517 19.447 36.890 4 AA_U4G5:C14C15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A G 5 1_555 B C 14 1_555 A U 6 1_555 A A 28 1_555 -2.776 -2.381 3.615 3.700 2.181 79.770 -1.917 2.268 3.451 1.700 -2.883 79.866 5 AA_G5U6:A28C14_AB A 5 ? B 14 ? A 6 ? A 28 ? 1 A U 6 1_555 A A 28 1_555 A A 31 1_555 B U 13 1_555 3.101 -3.799 5.050 42.149 -67.191 -154.820 2.212 1.752 4.313 34.177 21.439 -160.679 6 AA_U6A31:U13A28_BA A 6 ? A 28 ? A 31 ? B 13 ? 1 A A 31 1_555 B U 13 1_555 A U 9 1_555 B A 12 1_555 1.639 -1.289 2.889 -11.073 5.011 78.164 -1.129 -1.545 2.603 3.952 8.733 78.953 7 AA_A31U9:A12U13_BB A 31 ? B 13 ? A 9 ? B 12 ? 1 A U 9 1_555 B A 12 1_555 A A 10 1_555 B 5BU 11 1_555 -0.492 -1.305 2.827 -0.553 12.209 31.807 -3.782 0.772 2.199 21.318 0.965 34.018 8 AA_U9A10:5BU11A12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 A A 10 1_555 B 5BU 11 1_555 A C 11 1_555 B G 10 1_555 0.451 -1.458 3.237 1.627 6.430 35.803 -3.189 -0.507 2.956 10.349 -2.619 36.393 9 AA_A10C11:G105BU11_BB A 10 ? B 11 ? A 11 ? B 10 ? 1 A C 11 1_555 B G 10 1_555 A C 12 1_555 B G 9 1_555 -1.010 -2.133 3.582 -2.196 13.305 28.593 -6.320 1.462 2.442 25.243 4.167 31.553 10 AA_C11C12:G9G10_BB A 11 ? B 10 ? A 12 ? B 9 ? 1 A C 12 1_555 B G 9 1_555 A A 13 1_555 B U 8 1_555 0.083 -1.090 3.177 -0.544 16.311 35.260 -3.452 -0.186 2.456 25.321 0.844 38.745 11 AA_C12A13:U8G9_BB A 12 ? B 9 ? A 13 ? B 8 ? 1 A A 13 1_555 B U 8 1_555 A G 14 1_555 B C 7 1_555 0.855 -1.673 3.078 2.570 10.125 27.793 -5.117 -1.201 2.401 20.198 -5.126 29.655 12 AA_A13G14:C7U8_BB A 13 ? B 8 ? A 14 ? B 7 ? 1 A G 14 1_555 B C 7 1_555 A C 15 1_555 A G 20 1_555 -1.002 -0.797 3.071 2.993 11.543 28.911 -3.412 2.362 2.466 21.976 -5.698 31.225 13 AA_G14C15:G20C7_AB A 14 ? B 7 ? A 15 ? A 20 ? 1 A C 8 1_555 A C 26 1_555 A G 32 1_555 A C 25 1_555 3.161 -2.320 3.559 -2.929 5.879 82.693 -1.903 -2.463 3.325 4.443 2.213 82.906 14 AA_C8G32:C25C26_AA A 8 ? A 26 ? A 32 ? A 25 ? 1 A G 32 1_555 A C 25 1_555 A G 33 1_555 A C 24 1_555 0.040 -1.988 3.051 -1.867 4.035 27.360 -5.017 -0.485 2.726 8.460 3.915 27.713 15 AA_G32G33:C24C25_AA A 32 ? A 25 ? A 33 ? A 24 ? 1 A G 33 1_555 A C 24 1_555 A A 34 1_555 A U 23 1_555 -1.029 -1.482 3.448 2.611 6.292 40.071 -2.842 1.776 3.119 9.103 -3.778 40.622 16 AA_G33A34:U23C24_AA A 33 ? A 24 ? A 34 ? A 23 ? 1 A A 34 1_555 A U 23 1_555 A C 35 1_555 A G 22 1_555 0.601 -1.443 3.093 -0.147 5.785 28.202 -4.072 -1.239 2.745 11.717 0.298 28.778 17 AA_A34C35:G22U23_AA A 34 ? A 23 ? A 35 ? A 22 ? 1 A C 35 1_555 A G 22 1_555 A G 36 1_555 A A 21 1_555 0.388 -0.762 3.570 5.154 8.663 58.756 -1.239 -0.110 3.456 8.759 -5.211 59.538 18 AA_C35G36:A21G22_AA A 35 ? A 22 ? A 36 ? A 21 ? 1 A G 36 1_555 A A 21 1_555 A A 37 1_555 B OMC 6 1_555 -0.193 -0.930 3.559 7.320 1.308 19.959 -3.093 3.745 3.217 3.615 -20.235 21.286 19 AA_G36A37:OMC6A21_BA A 36 ? A 21 ? A 37 ? B 6 ? 1 A A 37 1_555 B OMC 6 1_555 A A 38 1_555 A G 17 1_555 1.075 -4.185 2.034 -26.568 37.924 -18.267 0.697 -1.726 4.514 -57.032 -39.954 -49.593 20 AA_A37A38:G17OMC6_AB A 37 ? B 6 ? A 38 ? A 17 ? 1 A A 38 1_555 A G 17 1_555 A A 39 1_555 B U 5 1_555 1.044 2.765 3.313 -0.716 -21.367 86.597 2.397 -0.761 2.710 -15.380 0.516 88.687 21 AA_A38A39:U5G17_BA A 38 ? A 17 ? A 39 ? B 5 ? 1 A A 39 1_555 B U 5 1_555 A C 40 1_555 B G 4 1_555 -0.234 -0.987 3.206 4.942 10.789 32.422 -3.225 1.109 2.687 18.564 -8.503 34.471 22 AA_A39C40:G4U5_BB A 39 ? B 5 ? A 40 ? B 4 ? 1 A C 40 1_555 B G 4 1_555 A G 41 1_555 B C 3 1_555 -0.029 -1.612 3.522 -2.757 18.953 31.029 -5.098 -0.319 2.204 31.906 4.642 36.340 23 AA_C40G41:C3G4_BB A 40 ? B 4 ? A 41 ? B 3 ? 1 A G 41 1_555 B C 3 1_555 A C 42 1_555 B G 2 1_555 0.111 -1.304 3.430 -1.321 5.881 39.378 -2.610 -0.319 3.205 8.666 1.946 39.819 24 AA_G41C42:G2C3_BB A 41 ? B 3 ? A 42 ? B 2 ? 1 A C 42 1_555 B G 2 1_555 A C 43 1_555 B G 1 1_555 1.276 -2.177 2.684 9.059 5.292 24.329 -5.910 -0.811 2.472 11.876 -20.328 26.464 25 AA_C42C43:G1G2_BB A 42 ? B 2 ? A 43 ? B 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #