HEADER RNA 15-APR-06 2GOZ OBSLTE 12-DEC-12 2GOZ 3ZD5 TITLE THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD TITLE 2 RIBOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-R(*GP*GP*CP*GP*UP*(OMC)P*CP*UP*GP*GP*(5BU) COMPND 7 P*AP*UP*CP*CP*AP*AP*(5BU)P*CP*(DC))-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: ENZYME STRAND WAS OBTAINED BY T7 RNA TRANSCRIPTION; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SUBSTRATE STRAND WAS OBTAINED BY SOLID-PHASE CHEMICAL SOURCE 7 SYNTHESIS KEYWDS CATALYTIC RNA, RIBOZYME, IN-LINE ATTACK, HAMMERHEAD RIBOZYME, KEYWDS 2 HAMMERHEAD RNA, STEM-LOOP INTERACTION, URIDINE TURN, A-FORM HELIX, KEYWDS 3 RNA EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTICK,W.G.SCOTT REVDAT 6 12-DEC-12 2GOZ 1 OBSLTE REVDAT 5 13-JUL-11 2GOZ 1 VERSN REVDAT 4 24-FEB-09 2GOZ 1 VERSN REVDAT 3 08-AUG-06 2GOZ 1 JRNL REVDAT 2 25-JUL-06 2GOZ 1 AUTHOR REVDAT 1 18-JUL-06 2GOZ 0 JRNL AUTH M.MARTICK,W.G.SCOTT JRNL TITL TERTIARY CONTACTS DISTANT FROM THE ACTIVE SITE PRIME A JRNL TITL 2 RIBOZYME FOR CATALYSIS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 126 309 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16859740 JRNL DOI 10.1016/J.CELL.2006.06.036 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 8688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 935 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 655 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1346 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.300 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.589 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1503 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2331 ; 1.676 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 649 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 572 ; 0.165 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 913 ; 0.277 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 100 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.127 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1 ; 0.014 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2111 ; 1.204 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2331 ; 1.628 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 4 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3823 19.2084 11.7297 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: -0.1945 REMARK 3 T33: -0.1772 T12: -0.1019 REMARK 3 T13: -0.0033 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 6.9290 L22: 5.0582 REMARK 3 L33: 10.4140 L12: 0.4236 REMARK 3 L13: -4.4986 L23: -4.9304 REMARK 3 S TENSOR REMARK 3 S11: -0.2006 S12: -0.4487 S13: 0.0102 REMARK 3 S21: -0.2611 S22: 0.1504 S23: 0.2384 REMARK 3 S31: 1.5002 S32: -0.2816 S33: 0.0501 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1244 16.4079 -3.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.1438 T22: -0.1555 REMARK 3 T33: 0.0112 T12: 0.0006 REMARK 3 T13: -0.0371 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 6.5940 L22: 9.4662 REMARK 3 L33: 3.1205 L12: 7.8537 REMARK 3 L13: 2.5967 L23: 3.5779 REMARK 3 S TENSOR REMARK 3 S11: -0.1176 S12: -0.3485 S13: -0.3489 REMARK 3 S21: -0.9745 S22: -0.0243 S23: -0.0780 REMARK 3 S31: -0.3817 S32: -0.0125 S33: 0.1420 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6659 -1.9395 -12.7416 REMARK 3 T TENSOR REMARK 3 T11: -0.2050 T22: -0.1130 REMARK 3 T33: 0.0385 T12: 0.0038 REMARK 3 T13: 0.1039 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 3.3687 L22: 5.7353 REMARK 3 L33: 4.5081 L12: -1.9915 REMARK 3 L13: -0.3927 L23: -0.0015 REMARK 3 S TENSOR REMARK 3 S11: 0.1391 S12: 0.5008 S13: -0.0143 REMARK 3 S21: -0.5279 S22: 0.1728 S23: -1.0389 REMARK 3 S31: -0.2495 S32: 0.2455 S33: -0.3119 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4754 2.4495 -24.6268 REMARK 3 T TENSOR REMARK 3 T11: -0.0343 T22: 0.1039 REMARK 3 T33: -0.0382 T12: -0.0893 REMARK 3 T13: 0.0925 T23: 0.0669 REMARK 3 L TENSOR REMARK 3 L11: 8.6938 L22: 4.5079 REMARK 3 L33: 8.1578 L12: -4.8520 REMARK 3 L13: 4.8722 L23: -0.2463 REMARK 3 S TENSOR REMARK 3 S11: -0.2732 S12: 0.6080 S13: 0.1671 REMARK 3 S21: 0.2533 S22: -0.0124 S23: 0.1956 REMARK 3 S31: -0.6583 S32: 1.0485 S33: 0.2856 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9841 19.9494 -17.7619 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.0495 REMARK 3 T33: 0.2716 T12: -0.1744 REMARK 3 T13: -0.0888 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 4.4483 L22: 10.0299 REMARK 3 L33: 26.6559 L12: -5.1430 REMARK 3 L13: -5.8445 L23: 7.4700 REMARK 3 S TENSOR REMARK 3 S11: -0.1153 S12: 0.4961 S13: 0.7629 REMARK 3 S21: -0.9904 S22: 0.6769 S23: -1.3833 REMARK 3 S31: -1.0628 S32: -0.3980 S33: -0.5616 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1838 14.4674 -0.5890 REMARK 3 T TENSOR REMARK 3 T11: -0.0903 T22: 0.0826 REMARK 3 T33: 0.0571 T12: -0.0835 REMARK 3 T13: 0.0266 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 12.1397 L22: 3.5750 REMARK 3 L33: 2.2987 L12: -0.0512 REMARK 3 L13: -2.0815 L23: 2.6435 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: -1.0949 S13: -0.0408 REMARK 3 S21: 0.4130 S22: -0.3860 S23: 0.7514 REMARK 3 S31: -0.2262 S32: -0.5808 S33: 0.3119 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -24.7594 17.2664 -15.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: 0.0282 REMARK 3 T33: 0.0791 T12: 0.0284 REMARK 3 T13: -0.1161 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.8458 L22: 5.3263 REMARK 3 L33: 22.0066 L12: 0.1924 REMARK 3 L13: 0.8753 L23: -5.3176 REMARK 3 S TENSOR REMARK 3 S11: 0.1284 S12: -0.1763 S13: 0.0388 REMARK 3 S21: 0.0269 S22: 0.1589 S23: 0.0083 REMARK 3 S31: -1.8585 S32: -0.1757 S33: -0.2873 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7379 14.7452 -28.9789 REMARK 3 T TENSOR REMARK 3 T11: 0.3529 T22: 0.0963 REMARK 3 T33: 0.2623 T12: -0.0359 REMARK 3 T13: -0.0203 T23: 0.1195 REMARK 3 L TENSOR REMARK 3 L11: 1.5030 L22: 0.9902 REMARK 3 L33: 11.0977 L12: 0.8927 REMARK 3 L13: 2.2560 L23: 3.2234 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.9348 S13: 0.3863 REMARK 3 S21: -0.6170 S22: 0.6314 S23: -0.7774 REMARK 3 S31: -1.5357 S32: -0.9727 S33: -0.6086 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -31.7736 8.0207 -32.8753 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0848 REMARK 3 T33: -0.0821 T12: 0.0057 REMARK 3 T13: 0.0131 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 10.1511 L22: 8.2911 REMARK 3 L33: 1.0693 L12: -3.0554 REMARK 3 L13: 3.2315 L23: -1.5192 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.3757 S13: -0.7339 REMARK 3 S21: -0.2585 S22: -0.0109 S23: 0.0080 REMARK 3 S31: -0.0971 S32: 0.6021 S33: 0.0203 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2998 14.7443 -28.6781 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: -0.0760 REMARK 3 T33: -0.1526 T12: -0.0542 REMARK 3 T13: -0.0033 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 1.2850 L22: 0.1141 REMARK 3 L33: 2.9908 L12: -0.2687 REMARK 3 L13: 1.0762 L23: -0.3671 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: -0.3450 S13: -0.1283 REMARK 3 S21: 0.1946 S22: 0.0412 S23: -0.1532 REMARK 3 S31: -0.6544 S32: 0.3985 S33: -0.0661 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 6 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3416 10.5389 -20.2912 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: -0.0622 REMARK 3 T33: 0.0577 T12: -0.0408 REMARK 3 T13: -0.1487 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 37.6593 L22: 8.1110 REMARK 3 L33: 64.3114 L12: -17.2270 REMARK 3 L13: 13.4577 L23: -9.8609 REMARK 3 S TENSOR REMARK 3 S11: -3.3709 S12: 0.3761 S13: 1.3001 REMARK 3 S21: 0.5435 S22: 1.3227 S23: -1.1983 REMARK 3 S31: 0.0715 S32: -1.0095 S33: 2.0482 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): -18.4438 -0.3707 -9.2215 REMARK 3 T TENSOR REMARK 3 T11: -0.1004 T22: -0.1445 REMARK 3 T33: 0.0275 T12: -0.0244 REMARK 3 T13: 0.0608 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 4.0675 L22: 2.1756 REMARK 3 L33: 5.6136 L12: 0.1754 REMARK 3 L13: 4.2291 L23: 0.0975 REMARK 3 S TENSOR REMARK 3 S11: 0.1975 S12: 0.0792 S13: 0.1961 REMARK 3 S21: 0.0698 S22: -0.0874 S23: -0.0937 REMARK 3 S31: -0.3052 S32: -0.1454 S33: -0.1101 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 14 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7369 7.7605 2.3231 REMARK 3 T TENSOR REMARK 3 T11: -0.0176 T22: -0.1274 REMARK 3 T33: 0.1002 T12: -0.1353 REMARK 3 T13: 0.0089 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 10.3607 L22: 49.6366 REMARK 3 L33: 2.1996 L12: 22.6775 REMARK 3 L13: 4.7738 L23: 10.4489 REMARK 3 S TENSOR REMARK 3 S11: 0.2100 S12: -0.2457 S13: -0.7906 REMARK 3 S21: 0.7475 S22: -0.5886 S23: -1.9068 REMARK 3 S31: 0.4057 S32: -0.5982 S33: 0.3786 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6466 15.6044 3.7331 REMARK 3 T TENSOR REMARK 3 T11: -0.0308 T22: -0.1778 REMARK 3 T33: 0.1586 T12: -0.0006 REMARK 3 T13: -0.0689 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 26.3842 L22: 10.3730 REMARK 3 L33: 16.6691 L12: 15.5528 REMARK 3 L13: -1.4154 L23: -5.3060 REMARK 3 S TENSOR REMARK 3 S11: 0.5634 S12: 0.2285 S13: -1.4916 REMARK 3 S21: -0.9344 S22: -0.2946 S23: -0.6315 REMARK 3 S31: 0.2418 S32: -0.0228 S33: -0.2688 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7846 23.5662 11.1255 REMARK 3 T TENSOR REMARK 3 T11: -0.0409 T22: -0.1330 REMARK 3 T33: -0.0776 T12: 0.0196 REMARK 3 T13: 0.0194 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 7.5963 L22: 6.6774 REMARK 3 L33: 4.7628 L12: -1.7910 REMARK 3 L13: -2.5293 L23: 4.3561 REMARK 3 S TENSOR REMARK 3 S11: -0.1070 S12: -0.1705 S13: -0.0080 REMARK 3 S21: 0.5373 S22: 0.3716 S23: -0.5499 REMARK 3 S31: 0.5465 S32: 0.1245 S33: -0.2646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL REFINEMENT IN CNS (SIMULATED REMARK 3 ANNEALING MOLECULAR DYNAMICS) FOLLOWED BY POSITIONAL AND TLS REMARK 3 REFINEMENT IN REFMAC. REMARK 4 REMARK 4 2GOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.919, 0.920, 0.9266 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 55.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE ENZYME AND SUBSTRATE WERE MIXED IN REMARK 280 EQUIMOLAR AMOUNTS IN A SOLUTION CONTAINING 50 MM MES PH 5.5, 1.5 REMARK 280 MM EDTA. THE COMPLEX WAS FORMED BY INCUBATING THE MIXTURE AT 95C REMARK 280 FOR 2 MIN., THEN AT 65C FOR 2 MIN., AND FINALLY AT 27C FOR 5 MIN. REMARK 280 1 MM MGCL2 WAS INCLUDED IN THE MIXTURE BEFORE THE FINAL REMARK 280 INCUBATION STEP. A 10 MG/ML CONCENTRATION OF RNA WAS USED FOR THE REMARK 280 CRYSTALLIZATION EXPERIMENTS. THE RESERVOIR SOLUTION CONTAINED REMARK 280 0.5M (NH4)2SO4, 100 MM MES PH 6.5, AND 35% PEG 3350. AFTER MIXING REMARK 280 THE RESERVOIR SOLUTION, THE SALT AND PEG PHASES WERE ALLOWED TO REMARK 280 SEPARATE, AND ONLY THE SALT PHASE WAS USED FOR THE DROPS. THE REMARK 280 CRYSTALS GREW IN HANGING DROPS OF 2 MICROLITERS AFTER 12 MONTHS REMARK 280 OF INCUBATION AT 28C. THE CRYSTALS WERE WASHED IN THE SALT PHASE REMARK 280 OF THE RESERVOIR SOLUTION PRIOR TO CRYO-FREEZING. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.94300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.94300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS ONE ENZYME AND ONE SUBSTRATE REMARK 300 STRAND OF THE HAMMERHEAD RIBOZYME. THERE IS ONE ENZYME-SUBSTRATE REMARK 300 COMPLEX IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 14 O5' G A 14 C5' -0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 6 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 C A 8 C5 - C6 - N1 ANGL. DEV. = -3.6 DEGREES REMARK 500 C A 11 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 14 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 C A 15 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 C A 26 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 A A 28 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 A A 31 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 G A 32 C5' - C4' - O4' ANGL. DEV. = 6.5 DEGREES REMARK 500 G A 32 C4' - C3' - C2' ANGL. DEV. = -7.1 DEGREES REMARK 500 C A 35 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 G B 10 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 U B 13 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 C B 15 O4' - C1' - N1 ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 2GOZ A 1 43 PDB 2GOZ 2GOZ 1 43 DBREF 2GOZ B 1 20 PDB 2GOZ 2GOZ 1 20 SEQRES 1 A 43 GDP G A U G U A C U A C C A SEQRES 2 A 43 G C U G A U G A G U C C C SEQRES 3 A 43 A A A U A G G A C G A A A SEQRES 4 A 43 C G C C SEQRES 1 B 20 G G C G U OMC C U G G 5BU A U SEQRES 2 B 20 C C A A 5BU C DC MODRES 2GOZ GDP A 1 G GUANOSINE-5'-DIPHOSPHATE MODRES 2GOZ OMC B 6 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 2GOZ 5BU B 11 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 2GOZ 5BU B 18 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE HET GDP A 1 28 HET OMC B 6 21 HET 5BU B 11 21 HET 5BU B 18 21 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM 5BU 5-BROMO-URIDINE-5'-MONOPHOSPHATE FORMUL 1 GDP C10 H15 N5 O11 P2 FORMUL 2 OMC C10 H16 N3 O8 P FORMUL 2 5BU 2(C9 H12 BR N2 O9 P) FORMUL 3 HOH *73(H2 O) LINK O3' U B 5 P OMC B 6 1555 1555 1.61 LINK O3' OMC B 6 P C B 7 1555 1555 1.59 LINK O3' GDP A 1 P G A 2 1555 1555 1.60 LINK O3' G B 10 P 5BU B 11 1555 1555 1.60 LINK O3' 5BU B 11 P A B 12 1555 1555 1.60 LINK O3' A B 17 P 5BU B 18 1555 1555 1.60 LINK O3' 5BU B 18 P C B 19 1555 1555 1.60 CRYST1 49.886 69.210 60.076 90.00 111.83 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020046 0.000000 0.008030 0.00000 SCALE2 0.000000 0.014449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017931 0.00000 HETATM 1 PB GDP A 1 -5.958 9.132 15.643 1.00 61.62 P HETATM 2 O1B GDP A 1 -6.374 7.672 15.689 1.00 60.56 O HETATM 3 O2B GDP A 1 -4.979 9.357 14.507 1.00 60.34 O HETATM 4 O3B GDP A 1 -5.299 9.457 16.969 1.00 60.26 O HETATM 5 O3A GDP A 1 -7.263 10.077 15.438 1.00 58.99 O HETATM 6 PA GDP A 1 -7.800 10.609 14.004 1.00 57.01 P HETATM 7 O1A GDP A 1 -8.510 9.492 13.268 1.00 56.77 O HETATM 8 O2A GDP A 1 -6.726 11.239 13.145 1.00 55.49 O HETATM 9 O5' GDP A 1 -8.841 11.760 14.440 1.00 54.13 O HETATM 10 C5' GDP A 1 -10.100 11.402 15.012 1.00 50.28 C HETATM 11 C4' GDP A 1 -10.729 12.603 15.690 1.00 45.99 C HETATM 12 O4' GDP A 1 -9.903 13.023 16.781 1.00 45.02 O HETATM 13 C3' GDP A 1 -10.803 13.826 14.784 1.00 45.50 C HETATM 14 O3' GDP A 1 -11.968 13.862 13.953 1.00 45.42 O HETATM 15 C2' GDP A 1 -10.719 14.978 15.781 1.00 43.39 C HETATM 16 O2' GDP A 1 -11.951 15.164 16.477 1.00 41.91 O HETATM 17 C1' GDP A 1 -9.736 14.444 16.793 1.00 42.05 C HETATM 18 N9 GDP A 1 -8.375 14.831 16.358 1.00 41.44 N HETATM 19 C8 GDP A 1 -7.409 14.013 15.882 1.00 41.52 C HETATM 20 N7 GDP A 1 -6.282 14.700 15.590 1.00 39.78 N HETATM 21 C5 GDP A 1 -6.540 15.994 15.868 1.00 40.53 C HETATM 22 C6 GDP A 1 -5.810 17.278 15.782 1.00 41.19 C HETATM 23 O6 GDP A 1 -4.640 17.337 15.371 1.00 42.55 O HETATM 24 N1 GDP A 1 -6.421 18.396 16.156 1.00 41.92 N HETATM 25 C2 GDP A 1 -7.681 18.407 16.614 1.00 41.28 C HETATM 26 N2 GDP A 1 -8.206 19.592 16.989 1.00 40.76 N HETATM 27 N3 GDP A 1 -8.419 17.277 16.720 1.00 41.07 N HETATM 28 C4 GDP A 1 -7.909 16.072 16.370 1.00 40.60 C