HEADER TRANSFERASE 17-APR-06 2GP6 TITLE X-RAY CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS BETA-KETOACYL TITLE 2 ACYL CARRIER PROTEIN SYNTHASE II (MTKASB) CAVEAT 2GP6 CHIRALITY ERRORS AT CA CENTER OF P53, D54, AND L55 IN CHAIN CAVEAT 2 2GP6 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.41; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: KASB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS THIOLASE FOLD, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SRIDHARAN,J.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 5 14-FEB-24 2GP6 1 SEQADV REVDAT 4 18-OCT-17 2GP6 1 REMARK REVDAT 3 24-FEB-09 2GP6 1 VERSN REVDAT 2 06-FEB-07 2GP6 1 JRNL REVDAT 1 18-JUL-06 2GP6 0 JRNL AUTH S.SRIDHARAN,L.WANG,A.K.BROWN,L.G.DOVER,L.KREMER,G.S.BESRA, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL X-RAY CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 BETA-KETOACYL ACYL CARRIER PROTEIN SYNTHASE II (MTKASB). JRNL REF J.MOL.BIOL. V. 366 469 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17174327 JRNL DOI 10.1016/J.JMB.2006.11.006 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 980.00 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 37785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1911 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.13500 REMARK 3 B22 (A**2) : 4.13500 REMARK 3 B33 (A**2) : -8.27000 REMARK 3 B12 (A**2) : -1.84200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.180 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 48.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED USING TWINNED DATA SET. TWIN REMARK 3 OPERATOR IS H,-H-K,-L. TWIN FRACTION IS 0.41 REMARK 4 REMARK 4 2GP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CAMD REMARK 200 BEAMLINE : GCPCC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CAPS PH 10.5, 20% PEG 8000, 100 REMARK 280 -150 MM NACL, FOS-CHOLINE, SPERMINE-HCL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 99.34100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.35455 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.94367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 99.34100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 57.35455 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.94367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 99.34100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 57.35455 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.94367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 114.70911 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.88733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 114.70911 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.88733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 114.70911 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.88733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 532 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 SER A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 LEU A -3 REMARK 465 VAL A -2 REMARK 465 PRO A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 MET B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 LEU B -3 REMARK 465 VAL B -2 REMARK 465 PRO B -1 REMARK 465 ARG B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 9 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP A 46 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 47 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 PRO A 48 C - N - CA ANGL. DEV. = -12.5 DEGREES REMARK 500 PRO A 48 C - N - CD ANGL. DEV. = 22.1 DEGREES REMARK 500 PRO A 48 CA - N - CD ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE A 53 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 PRO A 56 C - N - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO A 56 CA - N - CD ANGL. DEV. = -9.9 DEGREES REMARK 500 VAL A 57 O - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 78 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 PRO A 166 C - N - CA ANGL. DEV. = -13.7 DEGREES REMARK 500 PRO A 166 C - N - CD ANGL. DEV. = 23.5 DEGREES REMARK 500 PRO A 166 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO A 205 C - N - CA ANGL. DEV. = -12.8 DEGREES REMARK 500 PRO A 205 C - N - CD ANGL. DEV. = 22.1 DEGREES REMARK 500 PRO A 205 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 222 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 PRO A 223 C - N - CA ANGL. DEV. = -13.1 DEGREES REMARK 500 PRO A 223 C - N - CD ANGL. DEV. = 22.9 DEGREES REMARK 500 PRO A 223 CA - N - CD ANGL. DEV. = -9.3 DEGREES REMARK 500 PRO A 229 C - N - CA ANGL. DEV. = -11.8 DEGREES REMARK 500 PRO A 229 C - N - CD ANGL. DEV. = 23.8 DEGREES REMARK 500 PRO A 229 CA - N - CD ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO A 229 O - C - N ANGL. DEV. = -11.3 DEGREES REMARK 500 PHE A 230 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE A 275 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE A 275 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP B 46 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 54 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 PRO B 56 C - N - CA ANGL. DEV. = -12.8 DEGREES REMARK 500 PRO B 56 C - N - CD ANGL. DEV. = 23.9 DEGREES REMARK 500 PRO B 56 CA - N - CD ANGL. DEV. = -10.7 DEGREES REMARK 500 PHE B 67 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 68 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 HIS B 158 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 PRO B 166 C - N - CA ANGL. DEV. = -12.4 DEGREES REMARK 500 PRO B 166 C - N - CD ANGL. DEV. = 22.0 DEGREES REMARK 500 PRO B 166 CA - N - CD ANGL. DEV. = -8.9 DEGREES REMARK 500 ASN B 373 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 -168.96 -125.92 REMARK 500 ARG A 38 53.69 35.02 REMARK 500 LEU A 45 108.20 -59.63 REMARK 500 PHE A 49 15.41 -54.37 REMARK 500 VAL A 50 -83.06 -92.75 REMARK 500 ASP A 54 85.95 93.44 REMARK 500 SER A 99 58.35 32.87 REMARK 500 LEU A 115 -62.18 -106.52 REMARK 500 SER A 117 86.66 -56.30 REMARK 500 ALA A 118 -63.19 -92.42 REMARK 500 ALA A 130 -58.65 -152.48 REMARK 500 ALA A 135 65.32 -117.27 REMARK 500 HIS A 158 47.91 -68.72 REMARK 500 ALA A 159 107.30 -56.46 REMARK 500 SER A 168 40.47 -170.90 REMARK 500 ALA A 169 -115.69 49.89 REMARK 500 THR A 199 177.56 -57.80 REMARK 500 MET A 212 -96.06 -63.79 REMARK 500 ARG A 213 -22.68 -169.20 REMARK 500 VAL A 215 24.52 -76.29 REMARK 500 MET A 216 11.55 -64.95 REMARK 500 THR A 218 18.06 -66.56 REMARK 500 ASP A 222 67.67 -118.06 REMARK 500 ARG A 228 77.17 -156.47 REMARK 500 PRO A 229 -93.06 -27.84 REMARK 500 ALA A 268 129.86 -174.46 REMARK 500 PHE A 275 -91.88 -85.12 REMARK 500 VAL A 278 -35.01 -141.77 REMARK 500 ALA A 310 156.70 -46.73 REMARK 500 HIS A 311 66.76 -111.56 REMARK 500 LEU A 344 -52.24 -120.93 REMARK 500 VAL A 348 -92.74 79.92 REMARK 500 VAL A 375 -54.37 -121.58 REMARK 500 ASP A 378 130.39 -36.15 REMARK 500 ALA A 387 -27.37 -144.49 REMARK 500 LYS B 8 -71.20 -100.04 REMARK 500 ALA B 19 117.27 -168.93 REMARK 500 LEU B 45 89.98 -67.73 REMARK 500 VAL B 50 -54.67 -122.01 REMARK 500 LEU B 63 -153.33 -79.76 REMARK 500 LEU B 64 25.63 -148.97 REMARK 500 ASP B 68 -61.37 -126.33 REMARK 500 ALA B 130 -67.00 -154.52 REMARK 500 LEU B 139 30.09 -95.83 REMARK 500 HIS B 158 45.67 -75.85 REMARK 500 ALA B 169 -122.52 60.10 REMARK 500 THR B 199 -169.79 -68.34 REMARK 500 PHE B 209 -35.22 -141.80 REMARK 500 MET B 212 -121.61 -75.03 REMARK 500 ARG B 213 54.38 -150.43 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 48 13.10 REMARK 500 GLU A 52 10.01 REMARK 500 LEU A 55 -14.28 REMARK 500 ARG A 157 10.16 REMARK 500 THR A 165 11.89 REMARK 500 VAL A 185 10.60 REMARK 500 GLU A 202 -11.60 REMARK 500 ARG A 213 15.74 REMARK 500 ARG A 228 11.44 REMARK 500 PRO A 229 15.44 REMARK 500 ASN A 283 11.73 REMARK 500 VAL A 348 -10.16 REMARK 500 ASN A 373 10.39 REMARK 500 GLY A 388 -10.13 REMARK 500 PHE B 67 10.09 REMARK 500 GLU B 249 -11.64 REMARK 500 VAL B 348 -12.56 REMARK 500 GLY B 349 12.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KAS RELATED DB: PDB REMARK 900 RELATED ID: 1J3N RELATED DB: PDB REMARK 900 RELATED ID: 1E5M RELATED DB: PDB REMARK 900 RELATED ID: RV2246 RELATED DB: TARGETDB DBREF 2GP6 A 5 417 UNP P63456 FAB2_MYCTU 5 417 DBREF 2GP6 B 5 417 UNP P63456 FAB2_MYCTU 5 417 SEQADV 2GP6 MET A -16 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 GLY A -15 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER A -14 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER A -13 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 HIS A -12 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS A -11 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS A -10 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS A -9 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS A -8 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS A -7 UNP P63456 EXPRESSION TAG SEQADV 2GP6 SER A -6 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER A -5 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 GLY A -4 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 LEU A -3 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 VAL A -2 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 PRO A -1 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 ARG A 0 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 GLY A 1 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER A 2 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 HIS A 3 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 MET A 4 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 MET B -16 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 GLY B -15 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER B -14 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER B -13 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 HIS B -12 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS B -11 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS B -10 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS B -9 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS B -8 UNP P63456 EXPRESSION TAG SEQADV 2GP6 HIS B -7 UNP P63456 EXPRESSION TAG SEQADV 2GP6 SER B -6 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER B -5 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 GLY B -4 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 LEU B -3 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 VAL B -2 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 PRO B -1 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 ARG B 0 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 GLY B 1 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 SER B 2 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 HIS B 3 UNP P63456 CLONING ARTIFACT SEQADV 2GP6 MET B 4 UNP P63456 CLONING ARTIFACT SEQRES 1 A 434 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 434 LEU VAL PRO ARG GLY SER HIS MET VAL THR GLY LYS ALA SEQRES 3 A 434 PHE PRO TYR VAL VAL VAL THR GLY ILE ALA MET THR THR SEQRES 4 A 434 ALA LEU ALA THR ASP ALA GLU THR THR TRP LYS LEU LEU SEQRES 5 A 434 LEU ASP ARG GLN SER GLY ILE ARG THR LEU ASP ASP PRO SEQRES 6 A 434 PHE VAL GLU GLU PHE ASP LEU PRO VAL ARG ILE GLY GLY SEQRES 7 A 434 HIS LEU LEU GLU GLU PHE ASP HIS GLN LEU THR ARG ILE SEQRES 8 A 434 GLU LEU ARG ARG MET GLY TYR LEU GLN ARG MET SER THR SEQRES 9 A 434 VAL LEU SER ARG ARG LEU TRP GLU ASN ALA GLY SER PRO SEQRES 10 A 434 GLU VAL ASP THR ASN ARG LEU MET VAL SER ILE GLY THR SEQRES 11 A 434 GLY LEU GLY SER ALA GLU GLU LEU VAL PHE SER TYR ASP SEQRES 12 A 434 ASP MET ARG ALA ARG GLY MET LYS ALA VAL SER PRO LEU SEQRES 13 A 434 THR VAL GLN LYS TYR MET PRO ASN GLY ALA ALA ALA ALA SEQRES 14 A 434 VAL GLY LEU GLU ARG HIS ALA LYS ALA GLY VAL MET THR SEQRES 15 A 434 PRO VAL SER ALA CYS ALA SER GLY ALA GLU ALA ILE ALA SEQRES 16 A 434 ARG ALA TRP GLN GLN ILE VAL LEU GLY GLU ALA ASP ALA SEQRES 17 A 434 ALA ILE CYS GLY GLY VAL GLU THR ARG ILE GLU ALA VAL SEQRES 18 A 434 PRO ILE ALA GLY PHE ALA GLN MET ARG ILE VAL MET SER SEQRES 19 A 434 THR ASN ASN ASP ASP PRO ALA GLY ALA CYS ARG PRO PHE SEQRES 20 A 434 ASP ARG ASP ARG ASP GLY PHE VAL PHE GLY GLU GLY GLY SEQRES 21 A 434 ALA LEU LEU LEU ILE GLU THR GLU GLU HIS ALA LYS ALA SEQRES 22 A 434 ARG GLY ALA ASN ILE LEU ALA ARG ILE MET GLY ALA SER SEQRES 23 A 434 ILE THR SER ASP GLY PHE HIS MET VAL ALA PRO ASP PRO SEQRES 24 A 434 ASN GLY GLU ARG ALA GLY HIS ALA ILE THR ARG ALA ILE SEQRES 25 A 434 GLN LEU ALA GLY LEU ALA PRO GLY ASP ILE ASP HIS VAL SEQRES 26 A 434 ASN ALA HIS ALA THR GLY THR GLN VAL GLY ASP LEU ALA SEQRES 27 A 434 GLU GLY ARG ALA ILE ASN ASN ALA LEU GLY GLY ASN ARG SEQRES 28 A 434 PRO ALA VAL TYR ALA PRO LYS SER ALA LEU GLY HIS SER SEQRES 29 A 434 VAL GLY ALA VAL GLY ALA VAL GLU SER ILE LEU THR VAL SEQRES 30 A 434 LEU ALA LEU ARG ASP GLN VAL ILE PRO PRO THR LEU ASN SEQRES 31 A 434 LEU VAL ASN LEU ASP PRO GLU ILE ASP LEU ASP VAL VAL SEQRES 32 A 434 ALA GLY GLU PRO ARG PRO GLY ASN TYR ARG TYR ALA ILE SEQRES 33 A 434 ASN ASN SER PHE GLY PHE GLY GLY HIS ASN VAL ALA ILE SEQRES 34 A 434 ALA PHE GLY ARG TYR SEQRES 1 B 434 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 434 LEU VAL PRO ARG GLY SER HIS MET VAL THR GLY LYS ALA SEQRES 3 B 434 PHE PRO TYR VAL VAL VAL THR GLY ILE ALA MET THR THR SEQRES 4 B 434 ALA LEU ALA THR ASP ALA GLU THR THR TRP LYS LEU LEU SEQRES 5 B 434 LEU ASP ARG GLN SER GLY ILE ARG THR LEU ASP ASP PRO SEQRES 6 B 434 PHE VAL GLU GLU PHE ASP LEU PRO VAL ARG ILE GLY GLY SEQRES 7 B 434 HIS LEU LEU GLU GLU PHE ASP HIS GLN LEU THR ARG ILE SEQRES 8 B 434 GLU LEU ARG ARG MET GLY TYR LEU GLN ARG MET SER THR SEQRES 9 B 434 VAL LEU SER ARG ARG LEU TRP GLU ASN ALA GLY SER PRO SEQRES 10 B 434 GLU VAL ASP THR ASN ARG LEU MET VAL SER ILE GLY THR SEQRES 11 B 434 GLY LEU GLY SER ALA GLU GLU LEU VAL PHE SER TYR ASP SEQRES 12 B 434 ASP MET ARG ALA ARG GLY MET LYS ALA VAL SER PRO LEU SEQRES 13 B 434 THR VAL GLN LYS TYR MET PRO ASN GLY ALA ALA ALA ALA SEQRES 14 B 434 VAL GLY LEU GLU ARG HIS ALA LYS ALA GLY VAL MET THR SEQRES 15 B 434 PRO VAL SER ALA CYS ALA SER GLY ALA GLU ALA ILE ALA SEQRES 16 B 434 ARG ALA TRP GLN GLN ILE VAL LEU GLY GLU ALA ASP ALA SEQRES 17 B 434 ALA ILE CYS GLY GLY VAL GLU THR ARG ILE GLU ALA VAL SEQRES 18 B 434 PRO ILE ALA GLY PHE ALA GLN MET ARG ILE VAL MET SER SEQRES 19 B 434 THR ASN ASN ASP ASP PRO ALA GLY ALA CYS ARG PRO PHE SEQRES 20 B 434 ASP ARG ASP ARG ASP GLY PHE VAL PHE GLY GLU GLY GLY SEQRES 21 B 434 ALA LEU LEU LEU ILE GLU THR GLU GLU HIS ALA LYS ALA SEQRES 22 B 434 ARG GLY ALA ASN ILE LEU ALA ARG ILE MET GLY ALA SER SEQRES 23 B 434 ILE THR SER ASP GLY PHE HIS MET VAL ALA PRO ASP PRO SEQRES 24 B 434 ASN GLY GLU ARG ALA GLY HIS ALA ILE THR ARG ALA ILE SEQRES 25 B 434 GLN LEU ALA GLY LEU ALA PRO GLY ASP ILE ASP HIS VAL SEQRES 26 B 434 ASN ALA HIS ALA THR GLY THR GLN VAL GLY ASP LEU ALA SEQRES 27 B 434 GLU GLY ARG ALA ILE ASN ASN ALA LEU GLY GLY ASN ARG SEQRES 28 B 434 PRO ALA VAL TYR ALA PRO LYS SER ALA LEU GLY HIS SER SEQRES 29 B 434 VAL GLY ALA VAL GLY ALA VAL GLU SER ILE LEU THR VAL SEQRES 30 B 434 LEU ALA LEU ARG ASP GLN VAL ILE PRO PRO THR LEU ASN SEQRES 31 B 434 LEU VAL ASN LEU ASP PRO GLU ILE ASP LEU ASP VAL VAL SEQRES 32 B 434 ALA GLY GLU PRO ARG PRO GLY ASN TYR ARG TYR ALA ILE SEQRES 33 B 434 ASN ASN SER PHE GLY PHE GLY GLY HIS ASN VAL ALA ILE SEQRES 34 B 434 ALA PHE GLY ARG TYR FORMUL 3 HOH *229(H2 O) HELIX 1 1 ASP A 27 ASP A 37 1 11 HELIX 2 2 ASP A 47 ASP A 54 1 8 HELIX 3 3 THR A 72 ARG A 78 1 7 HELIX 4 4 GLY A 80 ALA A 97 1 18 HELIX 5 5 ALA A 118 ARG A 129 1 12 HELIX 6 6 LEU A 139 MET A 145 1 7 HELIX 7 7 ASN A 147 ARG A 157 1 11 HELIX 8 8 SER A 168 CYS A 170 5 3 HELIX 9 9 ALA A 171 LEU A 186 1 16 HELIX 10 10 GLU A 202 GLN A 211 1 10 HELIX 11 11 GLU A 251 ALA A 256 1 6 HELIX 12 12 GLY A 284 ALA A 298 1 15 HELIX 13 13 THR A 315 GLY A 331 1 17 HELIX 14 14 PRO A 340 GLY A 345 1 6 HELIX 15 15 ALA A 350 GLN A 366 1 17 HELIX 16 16 ASP B 27 ASP B 37 1 11 HELIX 17 17 THR B 72 MET B 79 1 8 HELIX 18 18 GLY B 80 ALA B 97 1 18 HELIX 19 19 ALA B 118 ASP B 126 1 9 HELIX 20 20 THR B 140 MET B 145 1 6 HELIX 21 21 ASN B 147 ARG B 157 1 11 HELIX 22 22 SER B 168 CYS B 170 5 3 HELIX 23 23 ALA B 171 GLY B 187 1 17 HELIX 24 24 GLU B 202 GLN B 211 1 10 HELIX 25 25 GLU B 251 ARG B 257 1 7 HELIX 26 26 GLY B 284 ALA B 298 1 15 HELIX 27 27 ALA B 301 GLY B 303 5 3 HELIX 28 28 THR B 315 LEU B 330 1 16 HELIX 29 29 ALA B 339 ALA B 343 5 5 HELIX 30 30 ALA B 350 GLN B 366 1 17 SHEET 1 A11 VAL A 163 MET A 164 0 SHEET 2 A11 LEU A 107 GLY A 112 1 N VAL A 109 O MET A 164 SHEET 3 A11 ALA A 191 VAL A 197 1 O ILE A 193 N SER A 110 SHEET 4 A11 GLY A 243 THR A 250 -1 O LEU A 246 N CYS A 194 SHEET 5 A11 VAL A 13 THR A 21 -1 N ALA A 19 O LEU A 245 SHEET 6 A11 ALA A 263 SER A 272 -1 O ALA A 263 N VAL A 15 SHEET 7 A11 HIS A 408 GLY A 415 -1 O GLY A 415 N ARG A 264 SHEET 8 A11 TYR A 397 GLY A 404 -1 N ASN A 400 O ILE A 412 SHEET 9 A11 ILE A 305 ASN A 309 1 N ASP A 306 O TYR A 397 SHEET 10 A11 ALA A 336 VAL A 337 1 O ALA A 336 N ASP A 306 SHEET 11 A11 ASP A 384 VAL A 385 1 O ASP A 384 N VAL A 337 SHEET 1 B 2 ILE A 42 THR A 44 0 SHEET 2 B 2 ILE A 59 GLY A 61 -1 O GLY A 60 N ARG A 43 SHEET 1 C12 PRO A 166 VAL A 167 0 SHEET 2 C12 VAL B 163 PRO B 166 -1 O THR B 165 N VAL A 167 SHEET 3 C12 LEU B 107 GLY B 112 1 N VAL B 109 O MET B 164 SHEET 4 C12 ALA B 191 VAL B 197 1 O ILE B 193 N SER B 110 SHEET 5 C12 GLY B 243 THR B 250 -1 O ILE B 248 N ALA B 192 SHEET 6 C12 VAL B 13 THR B 21 -1 N ALA B 19 O LEU B 245 SHEET 7 C12 ALA B 263 SER B 272 -1 O ALA B 263 N VAL B 15 SHEET 8 C12 HIS B 408 ARG B 416 -1 O GLY B 415 N ARG B 264 SHEET 9 C12 TYR B 397 GLY B 404 -1 N ALA B 398 O PHE B 414 SHEET 10 C12 ILE B 305 ASN B 309 1 N ASP B 306 O TYR B 397 SHEET 11 C12 ALA B 336 TYR B 338 1 O ALA B 336 N ASP B 306 SHEET 12 C12 ASP B 384 VAL B 385 1 O ASP B 384 N VAL B 337 SHEET 1 D 2 ARG B 43 THR B 44 0 SHEET 2 D 2 ILE B 59 GLY B 60 -1 O GLY B 60 N ARG B 43 CRYST1 198.682 198.682 71.831 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005033 0.002906 0.000000 0.00000 SCALE2 0.000000 0.005812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013922 0.00000