HEADER OXIDO-REDUCTSE(ALDEHYDE/DONR,NAD/ACCPT) 12-DEC-79 2GPD OBSLTE 12-JUL-89 2GPD 4GPD TITLE THE STRUCTURE OF LOBSTER APO-*D-*GLYCERALDEHYDE-3- TITLE 2 *PHOSPHATE DEHYDROGENASE AT 3.0 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS OXIDO-REDUCTSE(ALDEHYDE/DONR,NAD/ACCPT) EXPDTA X-RAY DIFFRACTION AUTHOR M.R.N.MURTHY,R.M.GARAVITO,J.E.JOHNSON,M.G.ROSSMANN REVDAT 8 12-JUL-89 2GPD 3 OBSLTE REVDAT 7 30-SEP-83 2GPD 1 REVDAT REVDAT 6 02-MAR-82 2GPD 1 REMARK REVDAT 5 20-APR-81 2GPD 3 SEQRES ATOM REVDAT 4 20-APR-81 2GPD 1 SITE REVDAT 3 01-OCT-80 2GPD 1 REMARK REVDAT 2 13-JUN-80 2GPD 1 JRNL REVDAT 1 07-MAR-80 2GPD 0 JRNL AUTH M.R.N.MURTHY,R.M.GARAVITO,J.E.JOHNSON,M.G.ROSSMANN JRNL TITL THE STRUCTURE OF LOBSTER JRNL TITL 2 APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT JRNL TITL 3 3.0 ANGSTROMS RESOLUTION JRNL REF J.MOL.BIOL. V. 138 859 1980 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.MORAS,K.W.OLSEN,M.N.SABESAN,M.BUEHNER,G.C.FORD, REMARK 1 AUTH 2 M.G.ROSSMANN REMARK 1 TITL STUDIES OF ASYMMETRY IN THE THREE-DIMENSIONAL REMARK 1 TITL 2 STRUCTURE OF LOBSTER D-GLYCERALDEHYDE-3-PHOSPHATE REMARK 1 TITL 3 DEHYDROGENASE REMARK 1 REF J.BIOL.CHEM. V. 250 9137 1975 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.W.OLSEN,R.M.GARAVITO,M.N.SABESAN,M.G.ROSSMANN REMARK 1 TITL ANION BINDING SITES IN THE ACTIVE CENTER OF REMARK 1 TITL 2 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 107 571 1976 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.W.OLSEN,R.M.GARAVITO,M.N.SABESAN,M.G.ROSSMANN REMARK 1 TITL STUDIES ON COENZYME BINDING TO REMARK 1 TITL 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 107 577 1976 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.G.ROSSMANN REMARK 1 TITL A COMPARISON OF THE BINDING AND FUNCTION OF /NAD REMARK 1 TITL 2 WITH RESPECT TO LACTATE DEHYDROGENASE AND REMARK 1 TITL 3 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 EDIT M.SUNDARALINGAM, S.T.RAO REMARK 1 REF STRUCTURE AND CONFORMATION 353 1975 REMARK 1 REF 2 OF NUCLEIC ACIDS AND REMARK 1 REF 3 PROTEIN-NUCLEIC ACID REMARK 1 REF 4 INTERACTIONS REMARK 1 PUBL UNIVERSITY PARK PRESS,BALTIMORE,MD. REMARK 1 REFN ISSN 0-8391-0764-1 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.W.OLSEN,D.MORAS,M.G.ROSSMANN,J.I.HARRIS REMARK 1 TITL SEQUENCE VARIABILITY AND STRUCTURE OF REMARK 1 TITL 2 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.BIOL.CHEM. V. 250 9313 1975 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.BUEHNER,G.C.FORD,D.MORAS,K.W.OLSEN,M.G.ROSSMANN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF REMARK 1 TITL 2 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 90 25 1974 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.BUEHNER,G.C.FORD,D.MORAS,K.W.OLSEN,M.G.ROSSMANN REMARK 1 TITL STRUCTURE DETERMINATION OF CRYSTALLINE LOBSTER REMARK 1 TITL 2 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 82 563 1974 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 8 REMARK 1 AUTH M.BUEHNER,G.C.FORD,D.MORAS,K.W.OLSEN,M.G.ROSSMANN REMARK 1 TITL D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, REMARK 1 TITL 2 THREE-DIMENSIONAL STRUCTURE AND EVOLUTIONARY REMARK 1 TITL 3 SIGNIFICANCE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 70 3052 1973 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 1 REFERENCE 9 REMARK 1 AUTH P.ARGOS,G.C.FORD,M.G.ROSSMANN REMARK 1 TITL AN APPLICATION OF THE MOLECULAR REPLACEMENT REMARK 1 TITL 2 TECHNIQUE IN DIRECT SPACE TO A KNOWN PROTEIN REMARK 1 TITL 3 STRUCTURE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 31 499 1975 REMARK 1 REFN ASTM ACACBN DK ISSN 0567-7394 REMARK 1 REFERENCE 10 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 75 1976 REMARK 1 REF 2 AND STRUCTURE,SUPPLEMENT 2 REMARK 1 PUBL NATIONAL BIOMEDICAL RESEARCH FOUNDATION, SILVER REMARK 1 PUBL 2 SPRING,MD. REMARK 1 REFN ISSN 0-912466-05-7 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GPD COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 2GPD THE PHASES FOR APO-GLYCERALDEHYDE-3-PHOSPHATE REMARK 5 DEHYDROGENASE 2GPD WERE DERIVED BY THE MOLECULAR REMARK 5 REPLACEMENT TECHNIQUE. THE 2GPD INITIAL PHASING MODEL WAS REMARK 5 THE HOLO GAPDH ELECTRON DENSITY 2GPD SUITABLY TRANFORMED TO REMARK 5 THE TRICLINIC APO GAPDH CELL. THE 2GPD KNOWN 222 SYMMETRY REMARK 5 OF THE TETRAMERIC MOLECULE WAS USED IN 2GPD IMPROVING THE REMARK 5 PHASES BY ELECTRON DENSITY AVERAGING. THE 2GPD STRUCTURE REMARK 5 WAS FOUND TO BE VERY SIMILAR TO THAT OF THE HOLO 2GPD REMARK 5 ENZYME. 2GPD REMARK 6 REMARK 6 2GPD THIS SUBUNIT IS CONSIDERED TO BE COMPRISED OF A REMARK 6 COFACTOR 2GPD BINDING DOMAIN AND A CATALYTIC DOMAIN. THE REMARK 6 CHARACTERS B 2GPD AND C IN THE SHEET IDENTIFIERS ARE USED REMARK 6 TO DENOTE WHICH 2GPD DOMAIN INCLUDES THESE STRUCTURAL REMARK 6 FEATURES. 2GPD REMARK 7 REMARK 7 2GPD THE SHEET SUBSTRUCTURE OF THE CATALYTIC DOMAIN IS 2GPD REMARK 7 BIFURCATED. TO REPRESENT THIS FEATURE REDUNDANT SHEETS 2GPD REMARK 7 ARE DEFINED. STRANDS 1-7 OF SHEET C1 ARE IDENTICAL TO 2GPD REMARK 7 STRANDS 1-7 OF SHEET C2. 2GPD REMARK 8 REMARK 8 2GPD THE NON-CRYSTALLOGRAPHIC DIAD SYMMETRY ELEMENTS REMARK 8 PARALLEL TO 2GPD THE P,Q, AND R AXES ARE EXPRESSED IN THE REMARK 8 MTRIX RECORDS 2GPD BELOW. THE RED AND GREEN SUBUNITS OF REMARK 8 HOLO GAPDH (1GPD) 2GPD ARE APPROXIMATELY RELATED BY THE REMARK 8 DIAD ALONG THE Z AXIS. 2GPD THIS IS THE R AXIS IN THE P,Q,R REMARK 8 SCHEME AND CORRESPONDS TO 2GPD MTRIX TRANSFORMATION NUMBER REMARK 8 3 . 2GPD REMARK 9 REMARK 9 2GPD SITE *AB* COMPRISES THOSE RESIDUES INTERACTING WITH REMARK 9 THE 2GPD ADENINE BASE OF THE COFACTOR. 2GPD REMARK 10 REMARK 10 2GPD SITE *AR* COMPRISES THOSE RESIDUES INTERACTING WITH REMARK 10 THE 2GPD ADENOSINE RIBOSE OF THE NAD COFACTOR. THIS SITE REMARK 10 INCLUDES 2GPD RESIDUE PRO 188 OF THE SUBUNIT GENERATED BY REMARK 10 THE APPLICATION 2GPD OF MTRIX TRANSFORMATION 3. 2GPD REMARK 11 REMARK 11 2GPD SITE *AP* COMPRISES THOSE RESIDUES INTERACTING WITH REMARK 11 THE 2GPD PHOSPHATE OF THE ADENOSINE NUCLEOTIDE OF THE NAD REMARK 11 COFACTOR. 2GPD REMARK 12 REMARK 12 2GPD SITE *NP* COMPRISES THOSE RESIDUES INTERACTING WITH REMARK 12 THE 2GPD PHOSPHATE OF THE NICOTINAMIDE NUCLEOTIDE OF THE REMARK 12 NAD 2GPD COFACTOR. 2GPD REMARK 13 REMARK 13 2GPD SITE *NR* COMPRISES THOSE RESIDUES INTERACTING WITH REMARK 13 THE 2GPD RIBOSE OF THE NICOTINAMIDE NUCLEOTIDE OF THE NAD REMARK 13 COFACTOR. 2GPD REMARK 14 REMARK 14 2GPD CORRECTION. UPDATE JRNL REFERENCE TO REFLECT REMARK 14 PUBLICATION. 2GPD 13-JUN-80. 2GPD REMARK 15 REMARK 15 2GPD CORRECTION. CHANGE ISSN CODE FOR REFERENCE 9. 01-OCT- REMARK 15 80. 2GPD REMARK 16 REMARK 16 2GPD CORRECTION. CORRECT FORMAT OF SITE RECORDS. 20-APR-81. REMARK 16 2GPD REMARK 17 REMARK 17 2GPD CORRECTION. CHANGE RESIDUE 6 FROM ASP TO ASN ON REMARK 17 DEPOSITORS 2GPD INSTRUCTIONS. 20-APR-81. 2GPD REMARK 18 REMARK 18 2GPD CORRECTION. CHANGE CODEN FOR REFERENCE 4. 02-MAR-82. REMARK 18 2GPD REMARK 19 REMARK 19 2GPD CORRECTION. INSERT REVDAT RECORDS. 30-SEP-83. 2GPD REMARK 20 REMARK 20 2GPD CORRECTION. THIS ENTRY IS OBSOLETE. 12-JUL-89. 2GPD REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN 6 OD1 ND2 REMARK 470 GLN 26 OE1 NE2 REMARK 470 ASN 31 OD1 ND2 REMARK 470 ASN 75 OD1 ND2 REMARK 470 ASN 81 OD1 ND2 REMARK 470 ASN 133 OD1 ND2 REMARK 470 ASN 146 OD1 ND2 REMARK 470 ASN 152 OD1 ND2 REMARK 470 ASN 164 OD1 ND2 REMARK 470 GLN 182 OE1 NE2 REMARK 470 GLN 201 OE1 NE2 REMARK 470 ASN 202 OD1 ND2 REMARK 470 GLN 268 OE1 NE2 REMARK 470 ASN 287 OD1 ND2 REMARK 470 GLN 299 OE1 NE2 REMARK 470 ASN 313 OD1 ND2 REMARK 470 GLN 319 OE1 NE2 REMARK 470 GLN 329 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O LEU 271 O SER 290 1.01 REMARK 500 O VAL 321 CD2 LEU 325 1.20 REMARK 500 O PHE 283 N GLY 285 1.26 REMARK 500 OG1 THR 150 OH TYR 311 1.31 REMARK 500 O LYS 159 OE2 GLU 163 1.37 REMARK 500 CZ ARG 10 OE2 GLU 314 1.38 REMARK 500 O PRO 219 N LEU 221 1.39 REMARK 500 NE ARG 10 OE2 GLU 314 1.42 REMARK 500 CZ PHE 165 CD1 ILE 255 1.42 REMARK 500 O ALA 125 NZ LYS 216 1.46 REMARK 500 N SER 206 O ALA 229 1.55 REMARK 500 CD1 LEU 64 O ILE 71 1.56 REMARK 500 O ILE 291 N TRP 310 1.58 REMARK 500 CB SER 238 CD2 TYR 311 1.59 REMARK 500 CG2 ILE 3 O TYR 91 1.63 REMARK 500 N GLY 7 O ASN 31 1.63 REMARK 500 C LEU 271 O SER 290 1.65 REMARK 500 NH2 ARG 320 OD2 ASP 323 1.65 REMARK 500 CE1 PHE 165 CD1 ILE 255 1.66 REMARK 500 O GLY 131 NZ LYS 159 1.67 REMARK 500 O ARG 10 CD2 LEU 14 1.68 REMARK 500 NH1 ARG 10 OE1 GLU 314 1.69 REMARK 500 O SER 206 N ALA 229 1.70 REMARK 500 O VAL 15 N ALA 18 1.74 REMARK 500 O ASP 282 N ILE 284 1.77 REMARK 500 O PHE 283 CA GLY 285 1.77 REMARK 500 CA GLY 7 O ASN 31 1.78 REMARK 500 O SER 301 N PHE 304 1.78 REMARK 500 O VAL 321 CG LEU 325 1.78 REMARK 500 C PRO 205 O ALA 229 1.83 REMARK 500 O ALA 190 CD1 TRP 193 1.84 REMARK 500 O TYR 39 N MET 43 1.85 REMARK 500 OD1 ASP 236 CB GLU 314 1.86 REMARK 500 OD1 ASP 236 CG GLU 314 1.86 REMARK 500 NE ARG 10 CD GLU 314 1.87 REMARK 500 C LYS 159 OE2 GLU 163 1.87 REMARK 500 CD2 LEU 134 CD2 HIS 327 1.88 REMARK 500 CB SER 238 CG TYR 311 1.88 REMARK 500 O ILE 204 N ARG 231 1.89 REMARK 500 O MET 40 N PHE 44 1.90 REMARK 500 O SER 1 AE2 GLN 26 1.91 REMARK 500 O ASP 253 N ILE 255 1.91 REMARK 500 O LEU 271 C SER 290 1.91 REMARK 500 O ASP 277 N VAL 279 1.91 REMARK 500 NH2 ARG 10 OE2 GLU 314 1.92 REMARK 500 CD2 PHE 8 NE ARG 13 1.93 REMARK 500 CZ ARG 10 CD GLU 314 1.93 REMARK 500 O LYS 260 N SER 263 1.93 REMARK 500 O TYR 317 CB ARG 320 1.93 REMARK 500 CD LYS 2 OE2 GLU 90 1.94 REMARK 500 CE MET 40 CG1 VAL 73 1.94 REMARK 500 CB ALA 177 O THR 234 1.95 REMARK 500 OD2 ASP 241 CE LYS 306 1.95 REMARK 500 O TYR 311 N ASN 313 1.95 REMARK 500 C VAL 321 CD2 LEU 325 1.95 REMARK 500 CD PRO 79 CZ PHE 99 1.96 REMARK 500 O CYS 153 CG PRO 156 1.96 REMARK 500 O GLN 268 N PHE 270 1.96 REMARK 500 CG PRO 79 CE2 PHE 99 1.97 REMARK 500 O SER 238 CD1 TYR 311 1.98 REMARK 500 O HIS 162 N GLU 166 1.99 REMARK 500 O MET 259 N SER 263 1.99 REMARK 500 O PHE 315 OG SER 318 1.99 REMARK 500 CB PHE 292 CB SER 309 2.00 REMARK 500 N SER 301 O PHE 304 2.00 REMARK 500 CA ILE 322 CG LEU 325 2.00 REMARK 500 O MET 328 OD2 ASP 332 2.00 REMARK 500 O SER 138 N ASP 140 2.01 REMARK 500 CA PRO 205 O ALA 229 2.01 REMARK 500 O PHE 283 C GLY 285 2.01 REMARK 500 O VAL 30 N PHE 74 2.02 REMARK 500 O SER 238 CG TYR 311 2.02 REMARK 500 CB ALA 177 CG2 THR 234 2.03 REMARK 500 CG2 ILE 291 O TRP 310 2.03 REMARK 500 CG PRO 79 CZ PHE 99 2.04 REMARK 500 O GLY 247 N GLU 249 2.05 REMARK 500 O SER 263 N GLN 268 2.05 REMARK 500 O ASP 277 CG1 VAL 279 2.05 REMARK 500 CD2 LEU 300 CB VAL 305 2.05 REMARK 500 CG LYS 2 OE2 GLU 90 2.06 REMARK 500 O HIS 108 N GLY 111 2.08 REMARK 500 O LEU 221 CD LYS 224 2.08 REMARK 500 N VAL 30 O THR 72 2.09 REMARK 500 CA LEU 134 CE1 HIS 327 2.09 REMARK 500 O ASN 152 CD PRO 156 2.09 REMARK 500 O GLY 269 O ARG 288 2.09 REMARK 500 CD2 TYR 91 CB LYS 115 2.10 REMARK 500 CG1 VAL 129 CG2 VAL 132 2.10 REMARK 500 O GLU 38 CG1 VAL 41 2.11 REMARK 500 O LEU 64 O ILE 71 2.11 REMARK 500 CB LEU 134 NE2 HIS 327 2.11 REMARK 500 O LEU 14 N ALA 18 2.12 REMARK 500 O VAL 66 N GLY 68 2.12 REMARK 500 O ALA 105 N HIS 108 2.12 REMARK 500 N HIS 176 O PHE 230 2.12 REMARK 500 O VAL 214 CG2 ILE 218 2.12 REMARK 500 NH1 ARG 10 CD GLU 314 2.13 REMARK 500 O THR 101 N GLU 103 2.13 REMARK 500 N LEU 242 O VAL 307 2.13 REMARK 500 C VAL 321 CG LEU 325 2.13 REMARK 500 O LEU 324 N MET 328 2.13 REMARK 500 CE LYS 2 OE2 GLU 90 2.14 REMARK 500 O ILE 291 CD1 TRP 310 2.14 REMARK 500 CD2 PHE 292 O VAL 308 2.14 REMARK 500 O ASP 323 N LYS 326 2.14 REMARK 500 CD ARG 10 CD GLU 314 2.15 REMARK 500 CG2 VAL 168 CB ARG 245 2.16 REMARK 500 O SER 189 N LYS 191 2.16 REMARK 500 O SER 238 CB TYR 311 2.16 REMARK 500 N ILE 322 CG LEU 325 2.16 REMARK 500 CE2 TYR 91 CG LYS 115 2.17 REMARK 500 OG1 THR 101 OD1 ASP 124 2.17 REMARK 500 CB MET 127 CG LYS 216 2.17 REMARK 500 O LYS 159 CD GLU 163 2.17 REMARK 500 CE1 PHE 283 CD1 ILE 291 2.17 REMARK 500 CB THR 150 OH TYR 311 2.18 REMARK 500 O ALA 257 N LYS 260 2.18 REMARK 500 O ARG 288 NH1 ARG 320 2.18 REMARK 500 O PHE 109 N GLY 111 2.19 REMARK 500 O VAL 129 CB ASN 133 2.19 REMARK 500 C GLY 131 NZ LYS 159 2.19 REMARK 500 OG SER 189 O ASP 192 2.19 REMARK 500 OH TYR 252 CG2 ILE 298 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA 25 N - CA - CB ANGL. DEV. =-40.1 DEGREES REMARK 500 ALA 25 N - CA - C ANGL. DEV. = 61.2 DEGREES REMARK 500 GLN 26 N - CA - C ANGL. DEV. = 38.2 DEGREES REMARK 500 VAL 27 N - CA - C ANGL. DEV. = 31.7 DEGREES REMARK 500 VAL 28 N - CA - C ANGL. DEV. = 49.4 DEGREES REMARK 500 HIS 50 N - CA - C ANGL. DEV. = 33.3 DEGREES REMARK 500 SER 85 N - CA - C ANGL. DEV. =-30.0 DEGREES REMARK 500 ASN 133 N - CA - C ANGL. DEV. = 31.4 DEGREES REMARK 500 SER 148 N - CA - C ANGL. DEV. = 36.7 DEGREES REMARK 500 ALA 199 N - CA - C ANGL. DEV. = 42.1 DEGREES REMARK 500 GLY 209 N - CA - C ANGL. DEV. = 30.6 DEGREES REMARK 500 LEU 246 N - CA - C ANGL. DEV. = 30.5 DEGREES REMARK 500 ASP 277 N - CA - C ANGL. DEV. = 41.0 DEGREES REMARK 500 LEU 300 N - CA - C ANGL. DEV. = 33.9 DEGREES REMARK 500 TRP 310 CB - CA - C ANGL. DEV. =-31.5 DEGREES REMARK 500 TRP 310 N - CA - C ANGL. DEV. = 55.7 DEGREES REMARK 500 TYR 311 CB - CA - C ANGL. DEV. =-32.6 DEGREES REMARK 500 TYR 311 N - CA - C ANGL. DEV. = 57.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN 26 119.14 125.88 REMARK 500 VAL 27 -177.98 -26.62 REMARK 500 VAL 28 -103.70 -160.56 REMARK 500 LYS 54 -146.14 143.25 REMARK 500 GLU 80 -48.02 96.26 REMARK 500 ALA 87 -26.07 133.07 REMARK 500 ALA 113 -108.50 -163.72 REMARK 500 ALA 125 157.67 126.02 REMARK 500 SER 148 143.93 22.38 REMARK 500 ILE 167 141.06 25.90 REMARK 500 ALA 200 -31.94 138.86 REMARK 500 GLN 268 -96.70 42.27 REMARK 500 LEU 271 -77.87 117.81 REMARK 500 ASP 277 -129.42 -13.78 REMARK 500 SER 280 -147.43 28.05 REMARK 500 ARG 288 -63.30 125.81 REMARK 500 SER 289 -65.06 138.69 REMARK 500 LYS 295 -26.04 133.75 REMARK 500 LYS 302 -91.78 33.22 REMARK 500 ASP 312 53.82 -0.60 SEQRES 1 334 ACE SER LYS ILE GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 334 ARG LEU VAL LEU ARG ALA ALA LEU SER CYS GLY ALA GLN SEQRES 3 334 VAL VAL ALA VAL ASN ASP PRO PHE ILE ALA LEU GLU TYR SEQRES 4 334 MET VAL TYR MET PHE LYS TYR ASP SER THR HIS GLY VAL SEQRES 5 334 PHE LYS GLY GLU VAL LYS MET GLU ASP GLY ALA LEU VAL SEQRES 6 334 VAL ASP GLY LYS LYS ILE THR VAL PHE ASN GLU MET LYS SEQRES 7 334 PRO GLU ASN ILE PRO TRP SER LYS ALA GLY ALA GLU TYR SEQRES 8 334 ILE VAL GLU SER THR GLY VAL PHE THR THR ILE GLU LYS SEQRES 9 334 ALA SER ALA HIS PHE LYS GLY GLY ALA LYS LYS VAL VAL SEQRES 10 334 ILE SER ALA PRO SER ALA ASP ALA PRO MET PHE VAL CYS SEQRES 11 334 GLY VAL ASN LEU GLU LYS TYR SER LYS ASP MET THR VAL SEQRES 12 334 VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA PRO SEQRES 13 334 VAL ALA LYS VAL LEU HIS GLU ASN PHE GLU ILE VAL GLU SEQRES 14 334 GLY LEU MET THR THR VAL HIS ALA VAL THR ALA THR GLN SEQRES 15 334 LYS THR VAL ASP GLY PRO SER ALA LYS ASP TRP ARG GLY SEQRES 16 334 GLY ARG GLY ALA ALA GLN ASN ILE ILE PRO SER SER THR SEQRES 17 334 GLY ALA ALA LYS ALA VAL GLY LYS VAL ILE PRO GLU LEU SEQRES 18 334 ASP GLY LYS LEU THR GLY MET ALA PHE ARG VAL PRO THR SEQRES 19 334 PRO ASP VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLY SEQRES 20 334 LYS GLU CYS SER TYR ASP ASP ILE LYS ALA ALA MET LYS SEQRES 21 334 THR ALA SER GLU GLY PRO LEU GLN GLY PHE LEU GLY TYR SEQRES 22 334 THR GLU ASP ASP VAL VAL SER SER ASP PHE ILE GLY ASP SEQRES 23 334 ASN ARG SER SER ILE PHE ASP ALA LYS ALA GLY ILE GLN SEQRES 24 334 LEU SER LYS THR PHE VAL LYS VAL VAL SER TRP TYR ASP SEQRES 25 334 ASN GLU PHE GLY TYR SER GLN ARG VAL ILE ASP LEU LEU SEQRES 26 334 LYS HIS MET GLN LYS VAL ASP SER ALA HELIX 1 B GLY 9 CYS 22 1 14 HELIX 2 C ALA 36 TYR 46 1 11 HELIX 3 E THR 101 GLY 112 1 12 HELIX 4 H4 SER 148 GLU 166 1IRREGULAR NEAR RES 154-157 19 HELIX 5 H5 GLY 209 ILE 218 1 10 HELIX 6 H6 SER 251 GLY 265 1 15 HELIX 7 H7 ASN 313 ALA 334 1 22 SHEET 1 BD 9 GLU 56 GLU 60 0 SHEET 2 BD 9 ALA 63 ASP 67 -1 SHEET 3 BD 9 THR 72 PHE 74 -1 SHEET 4 BD 9 VAL 27 ASP 32 1 SHEET 5 BD 9 LYS 2 GLY 7 1 SHEET 6 BD 9 GLU 90 SER 95 1 SHEET 7 BD 9 LYS 115 ALA 120 1 SHEET 8 BD 9 THR 142 ALA 147 1 SHEET 9 BD 9 PRO 126 PHE 128 1 SHEET 1 C1 8 VAL 185 LYS 191 0 SHEET 2 C1 8 ASP 192 ARG 194 -1 SHEET 3 C1 8 ILE 204 THR 208 -1 SHEET 4 C1 8 LYS 224 PRO 233 -1 SHEET 5 C1 8 VAL 168 THR 179 1 SHEET 6 C1 8 ASP 236 LEU 246 -1 SHEET 7 C1 8 THR 303 ASP 312 -1 SHEET 8 C1 8 GLN 299 SER 301 -1 SHEET 1 C2 9 VAL 185 LYS 191 0 SHEET 2 C2 9 ASP 192 ARG 194 -1 SHEET 3 C2 9 ILE 204 THR 208 -1 SHEET 4 C2 9 LYS 224 PRO 233 -1 SHEET 5 C2 9 VAL 168 THR 179 1 SHEET 6 C2 9 ASP 236 LEU 246 -1 SHEET 7 C2 9 THR 303 ASP 312 -1 SHEET 8 C2 9 SER 290 ASP 293 -1 SHEET 9 C2 9 LEU 271 TYR 273 1 SITE 1 AB 6 ASN 6 ASN 31 ASP 32 PHE 34 SITE 2 AB 6 THR 96 PHE 99 SITE 1 AR 2 GLY 7 ASP 32 SITE 1 AP 2 ARG 10 ALA 180 SITE 1 NP 1 ILE 11 SITE 1 NR 4 THR 96 GLY 97 SER 119 ALA 120 SITE 1 NB 4 ILE 11 CYS 149 ASN 313 TYR 317 CRYST1 82.800 80.800 82.600 110.70 71.50 116.90 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 -0.007454 0.005681 -0.007578 0.00000 SCALE2 0.000309 0.014324 0.000222 0.00000 SCALE3 -0.007301 0.003220 0.007874 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 MTRIX2 1 0.000000 -1.000000 0.000000 0.00000 MTRIX3 1 0.000000 0.000000 -1.000000 0.00000 MTRIX1 2 -1.000000 0.000000 0.000000 0.00000 MTRIX2 2 0.000000 1.000000 0.000000 0.00000 MTRIX3 2 0.000000 0.000000 -1.000000 0.00000 MTRIX1 3 -1.000000 0.000000 0.000000 0.00000 MTRIX2 3 0.000000 -1.000000 0.000000 0.00000 MTRIX3 3 0.000000 0.000000 1.000000 0.00000