data_2GPZ # _entry.id 2GPZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GPZ pdb_00002gpz 10.2210/pdb2gpz/pdb RCSB RCSB037411 ? ? WWPDB D_1000037411 ? ? # _pdbx_database_status.entry_id 2GPZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-04-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Buckle, A.M.' 1 'Law, R.H.' 2 'Whisstock, J.C.' 3 # _citation.id primary _citation.title 'The Crystal Structure of the Transthyretin-like Protein from Salmonella dublin, a Prokaryote 5-Hydroxyisourate Hydrolase.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 359 _citation.page_first 1389 _citation.page_last 1399 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16787778 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.04.057 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hennebry, S.C.' 1 ? primary 'Law, R.H.' 2 ? primary 'Richardson, S.J.' 3 ? primary 'Buckle, A.M.' 4 ? primary 'Whisstock, J.C.' 5 ? # _cell.entry_id 2GPZ _cell.length_a 94.705 _cell.length_b 94.705 _cell.length_c 57.381 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GPZ _symmetry.space_group_name_H-M 'P 6' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'transthyretin-like protein' 12666.250 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 32 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MILSVHILDQQTGKPAPGVEVVLEQKKDNGWTQLNTGHTDQDGRIKALWPEKAAAPGDYRVIFKTGQYFESKKLDTFFPE IPVEFHISKTNEHYHVPLLLSQYGYSTYRGS ; _entity_poly.pdbx_seq_one_letter_code_can ;MILSVHILDQQTGKPAPGVEVVLEQKKDNGWTQLNTGHTDQDGRIKALWPEKAAAPGDYRVIFKTGQYFESKKLDTFFPE IPVEFHISKTNEHYHVPLLLSQYGYSTYRGS ; _entity_poly.pdbx_strand_id A,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 LEU n 1 4 SER n 1 5 VAL n 1 6 HIS n 1 7 ILE n 1 8 LEU n 1 9 ASP n 1 10 GLN n 1 11 GLN n 1 12 THR n 1 13 GLY n 1 14 LYS n 1 15 PRO n 1 16 ALA n 1 17 PRO n 1 18 GLY n 1 19 VAL n 1 20 GLU n 1 21 VAL n 1 22 VAL n 1 23 LEU n 1 24 GLU n 1 25 GLN n 1 26 LYS n 1 27 LYS n 1 28 ASP n 1 29 ASN n 1 30 GLY n 1 31 TRP n 1 32 THR n 1 33 GLN n 1 34 LEU n 1 35 ASN n 1 36 THR n 1 37 GLY n 1 38 HIS n 1 39 THR n 1 40 ASP n 1 41 GLN n 1 42 ASP n 1 43 GLY n 1 44 ARG n 1 45 ILE n 1 46 LYS n 1 47 ALA n 1 48 LEU n 1 49 TRP n 1 50 PRO n 1 51 GLU n 1 52 LYS n 1 53 ALA n 1 54 ALA n 1 55 ALA n 1 56 PRO n 1 57 GLY n 1 58 ASP n 1 59 TYR n 1 60 ARG n 1 61 VAL n 1 62 ILE n 1 63 PHE n 1 64 LYS n 1 65 THR n 1 66 GLY n 1 67 GLN n 1 68 TYR n 1 69 PHE n 1 70 GLU n 1 71 SER n 1 72 LYS n 1 73 LYS n 1 74 LEU n 1 75 ASP n 1 76 THR n 1 77 PHE n 1 78 PHE n 1 79 PRO n 1 80 GLU n 1 81 ILE n 1 82 PRO n 1 83 VAL n 1 84 GLU n 1 85 PHE n 1 86 HIS n 1 87 ILE n 1 88 SER n 1 89 LYS n 1 90 THR n 1 91 ASN n 1 92 GLU n 1 93 HIS n 1 94 TYR n 1 95 HIS n 1 96 VAL n 1 97 PRO n 1 98 LEU n 1 99 LEU n 1 100 LEU n 1 101 SER n 1 102 GLN n 1 103 TYR n 1 104 GLY n 1 105 TYR n 1 106 SER n 1 107 THR n 1 108 TYR n 1 109 ARG n 1 110 GLY n 1 111 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Salmonella enterica' _entity_src_gen.gene_src_strain 'subsp. enterica serovar Dublin' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella enterica subsp. enterica serovar Dublin' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 98360 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta BL21' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CAI99863 _struct_ref.pdbx_db_accession 66947663 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ILSVHILDQQTGKPAPGVEVVLEQKKDNGWTQLNTGHTDQDGRIKALWPEKAAAPGDYRVIFKTGQYFESKKLDTFFPEI PVEFHISKTNEHYHVPLLLSQYGYSTYRGS ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GPZ A 2 ? 111 ? 66947663 27 ? 136 ? 6 115 2 1 2GPZ C 2 ? 111 ? 66947663 27 ? 136 ? 6 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GPZ MET A 1 ? GB 66947663 ? ? 'initiating methionine' 5 1 2 2GPZ MET C 1 ? GB 66947663 ? ? 'initiating methionine' 5 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2GPZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_percent_sol 58.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2M magnesium chloride, 0.1M sodium cacodylate, pH 6.0, EVAPORATION, RECRYSTALLIZATION, temperature 295K, pH 6.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-11-21 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-13' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2GPZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 82.017 _reflns.d_resolution_high 2.497 _reflns.number_obs 10308 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rsym_value 0.111 _reflns.pdbx_netI_over_sigmaI 6.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.000 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.49 _reflns_shell.d_res_low 2.63 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.457 _reflns_shell.pdbx_Rsym_value 0.457 _reflns_shell.meanI_over_sigI_obs 1.600 _reflns_shell.pdbx_redundancy 2.90 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2GPZ _refine.ls_number_reflns_obs 10306 _refine.ls_number_reflns_all 10306 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 81.92 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.226 _refine.ls_R_factor_R_free 0.261 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 496 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.914 _refine.correlation_coeff_Fo_to_Fc_free 0.900 _refine.B_iso_mean 24.36 _refine.aniso_B[1][1] -0.69000 _refine.aniso_B[2][2] -0.69000 _refine.aniso_B[3][3] 1.04000 _refine.aniso_B[1][2] -0.35000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1SN0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.465 _refine.pdbx_overall_ESU_R_Free 0.282 _refine.overall_SU_ML 0.236 _refine.overall_SU_B 19.260 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1732 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1774 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 81.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.022 ? 1786 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.193 1.946 ? 2426 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.014 5.000 ? 216 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.307 23.846 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.602 15.000 ? 278 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.216 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 258 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1360 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.162 0.200 ? 750 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 1144 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.123 0.200 ? 95 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.159 0.200 ? 83 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.098 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.529 3.000 ? 1130 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.969 5.000 ? 1758 'X-RAY DIFFRACTION' ? r_scbond_it 1.424 7.000 ? 770 'X-RAY DIFFRACTION' ? r_scangle_it 2.084 10.000 ? 668 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 866 ? 0.05 'tight positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 A 866 0.01 0.50 'tight thermal' 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.56 _refine_ls_shell.number_reflns_R_work 700 _refine_ls_shell.R_factor_R_work 0.303 _refine_ls_shell.percent_reflns_obs 97.07 _refine_ls_shell.R_factor_R_free 0.335 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 C # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A MET 1 . A SER 111 . A MET 5 A SER 115 1 ? 1 2 1 B MET 1 . B SER 111 . C MET 5 C SER 115 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2GPZ _struct.title 'Transthyretin-like protein from Salmonella dublin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GPZ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Salmonella, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Biological tetramer generated from the dimer in the asymmetric unit, by -X, -Y-1, Z' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 64 ? LYS A 72 ? LYS A 68 LYS A 76 1 ? 9 HELX_P HELX_P2 2 LYS B 64 ? LYS B 72 ? LYS C 68 LYS C 76 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 48 A . ? LEU 52 A TRP 49 A ? TRP 53 A 1 6.79 2 GLY 110 A . ? GLY 114 A SER 111 A ? SER 115 A 1 4.90 3 LEU 48 B . ? LEU 52 C TRP 49 B ? TRP 53 C 1 7.07 4 GLY 110 B . ? GLY 114 C SER 111 B ? SER 115 C 1 4.60 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? D ? 3 ? E ? 4 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? parallel E 1 2 ? anti-parallel E 2 3 ? parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 14 ? PRO A 15 ? LYS A 18 PRO A 19 A 2 ILE A 2 ? ASP A 9 ? ILE A 6 ASP A 13 A 3 HIS A 93 ? HIS A 95 ? HIS A 97 HIS A 99 B 1 ARG A 44 ? ILE A 45 ? ARG A 48 ILE A 49 B 2 ILE A 2 ? ASP A 9 ? ILE A 6 ASP A 13 B 3 LEU A 98 ? SER A 101 ? LEU A 102 SER A 105 B 4 GLY A 104 ? THR A 107 ? GLY A 108 THR A 111 C 1 TRP A 31 ? HIS A 38 ? TRP A 35 HIS A 42 C 2 GLU A 20 ? LYS A 26 ? GLU A 24 LYS A 30 C 3 GLY A 57 ? PHE A 63 ? GLY A 61 PHE A 67 C 4 ILE A 81 ? ILE A 87 ? ILE A 85 ILE A 91 D 1 LYS B 14 ? PRO B 15 ? LYS C 18 PRO C 19 D 2 ILE B 2 ? ASP B 9 ? ILE C 6 ASP C 13 D 3 HIS B 93 ? HIS B 95 ? HIS C 97 HIS C 99 E 1 ARG B 44 ? ILE B 45 ? ARG C 48 ILE C 49 E 2 ILE B 2 ? ASP B 9 ? ILE C 6 ASP C 13 E 3 LEU B 98 ? SER B 101 ? LEU C 102 SER C 105 E 4 GLY B 104 ? THR B 107 ? GLY C 108 THR C 111 F 1 TRP B 31 ? HIS B 38 ? TRP C 35 HIS C 42 F 2 GLU B 20 ? LYS B 26 ? GLU C 24 LYS C 30 F 3 GLY B 57 ? PHE B 63 ? GLY C 61 PHE C 67 F 4 ILE B 81 ? ILE B 87 ? ILE C 85 ILE C 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 14 ? O LYS A 18 N ASP A 9 ? N ASP A 13 A 2 3 N ILE A 2 ? N ILE A 6 O TYR A 94 ? O TYR A 98 B 1 2 O ILE A 45 ? O ILE A 49 N VAL A 5 ? N VAL A 9 B 2 3 N LEU A 8 ? N LEU A 12 O LEU A 98 ? O LEU A 102 B 3 4 N LEU A 99 ? N LEU A 103 O SER A 106 ? O SER A 110 C 1 2 O GLY A 37 ? O GLY A 41 N VAL A 21 ? N VAL A 25 C 2 3 N GLU A 24 ? N GLU A 28 O ARG A 60 ? O ARG A 64 C 3 4 N TYR A 59 ? N TYR A 63 O PHE A 85 ? O PHE A 89 D 1 2 O LYS B 14 ? O LYS C 18 N ASP B 9 ? N ASP C 13 D 2 3 N ILE B 2 ? N ILE C 6 O TYR B 94 ? O TYR C 98 E 1 2 O ILE B 45 ? O ILE C 49 N VAL B 5 ? N VAL C 9 E 2 3 N LEU B 8 ? N LEU C 12 O LEU B 98 ? O LEU C 102 E 3 4 N LEU B 99 ? N LEU C 103 O SER B 106 ? O SER C 110 F 1 2 O GLY B 37 ? O GLY C 41 N VAL B 21 ? N VAL C 25 F 2 3 N GLU B 24 ? N GLU C 28 O ARG B 60 ? O ARG C 64 F 3 4 N TYR B 59 ? N TYR C 63 O PHE B 85 ? O PHE C 89 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C SO4 116 ? 5 'BINDING SITE FOR RESIDUE SO4 C 116' AC2 Software A SO4 116 ? 5 'BINDING SITE FOR RESIDUE SO4 A 116' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP B 40 ? ASP C 44 . ? 1_555 ? 2 AC1 5 GLN B 41 ? GLN C 45 . ? 1_555 ? 3 AC1 5 ASP B 42 ? ASP C 46 . ? 1_555 ? 4 AC1 5 LYS B 46 ? LYS C 50 . ? 1_555 ? 5 AC1 5 HIS B 93 ? HIS C 97 . ? 3_655 ? 6 AC2 5 ASP A 40 ? ASP A 44 . ? 1_555 ? 7 AC2 5 GLN A 41 ? GLN A 45 . ? 1_555 ? 8 AC2 5 ASP A 42 ? ASP A 46 . ? 1_555 ? 9 AC2 5 LYS A 46 ? LYS A 50 . ? 1_555 ? 10 AC2 5 HIS A 93 ? HIS A 97 . ? 2_545 ? # _atom_sites.entry_id 2GPZ _atom_sites.fract_transf_matrix[1][1] 0.010559 _atom_sites.fract_transf_matrix[1][2] 0.006096 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012193 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017427 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 5 5 MET MET A . n A 1 2 ILE 2 6 6 ILE ILE A . n A 1 3 LEU 3 7 7 LEU LEU A . n A 1 4 SER 4 8 8 SER SER A . n A 1 5 VAL 5 9 9 VAL VAL A . n A 1 6 HIS 6 10 10 HIS HIS A . n A 1 7 ILE 7 11 11 ILE ILE A . n A 1 8 LEU 8 12 12 LEU LEU A . n A 1 9 ASP 9 13 13 ASP ASP A . n A 1 10 GLN 10 14 14 GLN GLN A . n A 1 11 GLN 11 15 15 GLN GLN A . n A 1 12 THR 12 16 16 THR THR A . n A 1 13 GLY 13 17 17 GLY GLY A . n A 1 14 LYS 14 18 18 LYS LYS A . n A 1 15 PRO 15 19 19 PRO PRO A . n A 1 16 ALA 16 20 20 ALA ALA A . n A 1 17 PRO 17 21 21 PRO PRO A . n A 1 18 GLY 18 22 22 GLY GLY A . n A 1 19 VAL 19 23 23 VAL VAL A . n A 1 20 GLU 20 24 24 GLU GLU A . n A 1 21 VAL 21 25 25 VAL VAL A . n A 1 22 VAL 22 26 26 VAL VAL A . n A 1 23 LEU 23 27 27 LEU LEU A . n A 1 24 GLU 24 28 28 GLU GLU A . n A 1 25 GLN 25 29 29 GLN GLN A . n A 1 26 LYS 26 30 30 LYS LYS A . n A 1 27 LYS 27 31 31 LYS LYS A . n A 1 28 ASP 28 32 32 ASP ASP A . n A 1 29 ASN 29 33 ? ? ? A . n A 1 30 GLY 30 34 34 GLY GLY A . n A 1 31 TRP 31 35 35 TRP TRP A . n A 1 32 THR 32 36 36 THR THR A . n A 1 33 GLN 33 37 37 GLN GLN A . n A 1 34 LEU 34 38 38 LEU LEU A . n A 1 35 ASN 35 39 39 ASN ASN A . n A 1 36 THR 36 40 40 THR THR A . n A 1 37 GLY 37 41 41 GLY GLY A . n A 1 38 HIS 38 42 42 HIS HIS A . n A 1 39 THR 39 43 43 THR THR A . n A 1 40 ASP 40 44 44 ASP ASP A . n A 1 41 GLN 41 45 45 GLN GLN A . n A 1 42 ASP 42 46 46 ASP ASP A . n A 1 43 GLY 43 47 47 GLY GLY A . n A 1 44 ARG 44 48 48 ARG ARG A . n A 1 45 ILE 45 49 49 ILE ILE A . n A 1 46 LYS 46 50 50 LYS LYS A . n A 1 47 ALA 47 51 51 ALA ALA A . n A 1 48 LEU 48 52 52 LEU LEU A . n A 1 49 TRP 49 53 53 TRP TRP A . n A 1 50 PRO 50 54 54 PRO PRO A . n A 1 51 GLU 51 55 55 GLU GLU A . n A 1 52 LYS 52 56 56 LYS LYS A . n A 1 53 ALA 53 57 57 ALA ALA A . n A 1 54 ALA 54 58 58 ALA ALA A . n A 1 55 ALA 55 59 59 ALA ALA A . n A 1 56 PRO 56 60 60 PRO PRO A . n A 1 57 GLY 57 61 61 GLY GLY A . n A 1 58 ASP 58 62 62 ASP ASP A . n A 1 59 TYR 59 63 63 TYR TYR A . n A 1 60 ARG 60 64 64 ARG ARG A . n A 1 61 VAL 61 65 65 VAL VAL A . n A 1 62 ILE 62 66 66 ILE ILE A . n A 1 63 PHE 63 67 67 PHE PHE A . n A 1 64 LYS 64 68 68 LYS LYS A . n A 1 65 THR 65 69 69 THR THR A . n A 1 66 GLY 66 70 70 GLY GLY A . n A 1 67 GLN 67 71 71 GLN GLN A . n A 1 68 TYR 68 72 72 TYR TYR A . n A 1 69 PHE 69 73 73 PHE PHE A . n A 1 70 GLU 70 74 74 GLU GLU A . n A 1 71 SER 71 75 75 SER SER A . n A 1 72 LYS 72 76 76 LYS LYS A . n A 1 73 LYS 73 77 77 LYS LYS A . n A 1 74 LEU 74 78 78 LEU LEU A . n A 1 75 ASP 75 79 79 ASP ASP A . n A 1 76 THR 76 80 80 THR THR A . n A 1 77 PHE 77 81 81 PHE PHE A . n A 1 78 PHE 78 82 82 PHE PHE A . n A 1 79 PRO 79 83 83 PRO PRO A . n A 1 80 GLU 80 84 84 GLU GLU A . n A 1 81 ILE 81 85 85 ILE ILE A . n A 1 82 PRO 82 86 86 PRO PRO A . n A 1 83 VAL 83 87 87 VAL VAL A . n A 1 84 GLU 84 88 88 GLU GLU A . n A 1 85 PHE 85 89 89 PHE PHE A . n A 1 86 HIS 86 90 90 HIS HIS A . n A 1 87 ILE 87 91 91 ILE ILE A . n A 1 88 SER 88 92 92 SER SER A . n A 1 89 LYS 89 93 93 LYS LYS A . n A 1 90 THR 90 94 94 THR THR A . n A 1 91 ASN 91 95 95 ASN ASN A . n A 1 92 GLU 92 96 96 GLU GLU A . n A 1 93 HIS 93 97 97 HIS HIS A . n A 1 94 TYR 94 98 98 TYR TYR A . n A 1 95 HIS 95 99 99 HIS HIS A . n A 1 96 VAL 96 100 100 VAL VAL A . n A 1 97 PRO 97 101 101 PRO PRO A . n A 1 98 LEU 98 102 102 LEU LEU A . n A 1 99 LEU 99 103 103 LEU LEU A . n A 1 100 LEU 100 104 104 LEU LEU A . n A 1 101 SER 101 105 105 SER SER A . n A 1 102 GLN 102 106 106 GLN GLN A . n A 1 103 TYR 103 107 107 TYR TYR A . n A 1 104 GLY 104 108 108 GLY GLY A . n A 1 105 TYR 105 109 109 TYR TYR A . n A 1 106 SER 106 110 110 SER SER A . n A 1 107 THR 107 111 111 THR THR A . n A 1 108 TYR 108 112 112 TYR TYR A . n A 1 109 ARG 109 113 113 ARG ARG A . n A 1 110 GLY 110 114 114 GLY GLY A . n A 1 111 SER 111 115 115 SER SER A . n B 1 1 MET 1 5 5 MET MET C . n B 1 2 ILE 2 6 6 ILE ILE C . n B 1 3 LEU 3 7 7 LEU LEU C . n B 1 4 SER 4 8 8 SER SER C . n B 1 5 VAL 5 9 9 VAL VAL C . n B 1 6 HIS 6 10 10 HIS HIS C . n B 1 7 ILE 7 11 11 ILE ILE C . n B 1 8 LEU 8 12 12 LEU LEU C . n B 1 9 ASP 9 13 13 ASP ASP C . n B 1 10 GLN 10 14 14 GLN GLN C . n B 1 11 GLN 11 15 15 GLN GLN C . n B 1 12 THR 12 16 16 THR THR C . n B 1 13 GLY 13 17 17 GLY GLY C . n B 1 14 LYS 14 18 18 LYS LYS C . n B 1 15 PRO 15 19 19 PRO PRO C . n B 1 16 ALA 16 20 20 ALA ALA C . n B 1 17 PRO 17 21 21 PRO PRO C . n B 1 18 GLY 18 22 22 GLY GLY C . n B 1 19 VAL 19 23 23 VAL VAL C . n B 1 20 GLU 20 24 24 GLU GLU C . n B 1 21 VAL 21 25 25 VAL VAL C . n B 1 22 VAL 22 26 26 VAL VAL C . n B 1 23 LEU 23 27 27 LEU LEU C . n B 1 24 GLU 24 28 28 GLU GLU C . n B 1 25 GLN 25 29 29 GLN GLN C . n B 1 26 LYS 26 30 30 LYS LYS C . n B 1 27 LYS 27 31 31 LYS LYS C . n B 1 28 ASP 28 32 32 ASP ASP C . n B 1 29 ASN 29 33 ? ? ? C . n B 1 30 GLY 30 34 34 GLY GLY C . n B 1 31 TRP 31 35 35 TRP TRP C . n B 1 32 THR 32 36 36 THR THR C . n B 1 33 GLN 33 37 37 GLN GLN C . n B 1 34 LEU 34 38 38 LEU LEU C . n B 1 35 ASN 35 39 39 ASN ASN C . n B 1 36 THR 36 40 40 THR THR C . n B 1 37 GLY 37 41 41 GLY GLY C . n B 1 38 HIS 38 42 42 HIS HIS C . n B 1 39 THR 39 43 43 THR THR C . n B 1 40 ASP 40 44 44 ASP ASP C . n B 1 41 GLN 41 45 45 GLN GLN C . n B 1 42 ASP 42 46 46 ASP ASP C . n B 1 43 GLY 43 47 47 GLY GLY C . n B 1 44 ARG 44 48 48 ARG ARG C . n B 1 45 ILE 45 49 49 ILE ILE C . n B 1 46 LYS 46 50 50 LYS LYS C . n B 1 47 ALA 47 51 51 ALA ALA C . n B 1 48 LEU 48 52 52 LEU LEU C . n B 1 49 TRP 49 53 53 TRP TRP C . n B 1 50 PRO 50 54 54 PRO PRO C . n B 1 51 GLU 51 55 55 GLU GLU C . n B 1 52 LYS 52 56 56 LYS LYS C . n B 1 53 ALA 53 57 57 ALA ALA C . n B 1 54 ALA 54 58 58 ALA ALA C . n B 1 55 ALA 55 59 59 ALA ALA C . n B 1 56 PRO 56 60 60 PRO PRO C . n B 1 57 GLY 57 61 61 GLY GLY C . n B 1 58 ASP 58 62 62 ASP ASP C . n B 1 59 TYR 59 63 63 TYR TYR C . n B 1 60 ARG 60 64 64 ARG ARG C . n B 1 61 VAL 61 65 65 VAL VAL C . n B 1 62 ILE 62 66 66 ILE ILE C . n B 1 63 PHE 63 67 67 PHE PHE C . n B 1 64 LYS 64 68 68 LYS LYS C . n B 1 65 THR 65 69 69 THR THR C . n B 1 66 GLY 66 70 70 GLY GLY C . n B 1 67 GLN 67 71 71 GLN GLN C . n B 1 68 TYR 68 72 72 TYR TYR C . n B 1 69 PHE 69 73 73 PHE PHE C . n B 1 70 GLU 70 74 74 GLU GLU C . n B 1 71 SER 71 75 75 SER SER C . n B 1 72 LYS 72 76 76 LYS LYS C . n B 1 73 LYS 73 77 77 LYS LYS C . n B 1 74 LEU 74 78 78 LEU LEU C . n B 1 75 ASP 75 79 79 ASP ASP C . n B 1 76 THR 76 80 80 THR THR C . n B 1 77 PHE 77 81 81 PHE PHE C . n B 1 78 PHE 78 82 82 PHE PHE C . n B 1 79 PRO 79 83 83 PRO PRO C . n B 1 80 GLU 80 84 84 GLU GLU C . n B 1 81 ILE 81 85 85 ILE ILE C . n B 1 82 PRO 82 86 86 PRO PRO C . n B 1 83 VAL 83 87 87 VAL VAL C . n B 1 84 GLU 84 88 88 GLU GLU C . n B 1 85 PHE 85 89 89 PHE PHE C . n B 1 86 HIS 86 90 90 HIS HIS C . n B 1 87 ILE 87 91 91 ILE ILE C . n B 1 88 SER 88 92 92 SER SER C . n B 1 89 LYS 89 93 93 LYS LYS C . n B 1 90 THR 90 94 94 THR THR C . n B 1 91 ASN 91 95 95 ASN ASN C . n B 1 92 GLU 92 96 96 GLU GLU C . n B 1 93 HIS 93 97 97 HIS HIS C . n B 1 94 TYR 94 98 98 TYR TYR C . n B 1 95 HIS 95 99 99 HIS HIS C . n B 1 96 VAL 96 100 100 VAL VAL C . n B 1 97 PRO 97 101 101 PRO PRO C . n B 1 98 LEU 98 102 102 LEU LEU C . n B 1 99 LEU 99 103 103 LEU LEU C . n B 1 100 LEU 100 104 104 LEU LEU C . n B 1 101 SER 101 105 105 SER SER C . n B 1 102 GLN 102 106 106 GLN GLN C . n B 1 103 TYR 103 107 107 TYR TYR C . n B 1 104 GLY 104 108 108 GLY GLY C . n B 1 105 TYR 105 109 109 TYR TYR C . n B 1 106 SER 106 110 110 SER SER C . n B 1 107 THR 107 111 111 THR THR C . n B 1 108 TYR 108 112 112 TYR TYR C . n B 1 109 ARG 109 113 113 ARG ARG C . n B 1 110 GLY 110 114 114 GLY GLY C . n B 1 111 SER 111 115 115 SER SER C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 116 102 SO4 SO4 A . D 2 SO4 1 116 101 SO4 SO4 C . E 3 HOH 1 117 2 HOH HOH A . E 3 HOH 2 118 7 HOH HOH A . E 3 HOH 3 119 8 HOH HOH A . E 3 HOH 4 120 9 HOH HOH A . E 3 HOH 5 121 12 HOH HOH A . E 3 HOH 6 122 13 HOH HOH A . E 3 HOH 7 123 14 HOH HOH A . E 3 HOH 8 124 15 HOH HOH A . E 3 HOH 9 125 16 HOH HOH A . E 3 HOH 10 126 18 HOH HOH A . E 3 HOH 11 127 20 HOH HOH A . E 3 HOH 12 128 21 HOH HOH A . E 3 HOH 13 129 22 HOH HOH A . E 3 HOH 14 130 25 HOH HOH A . E 3 HOH 15 131 27 HOH HOH A . E 3 HOH 16 132 29 HOH HOH A . E 3 HOH 17 133 30 HOH HOH A . F 3 HOH 1 117 1 HOH HOH C . F 3 HOH 2 118 3 HOH HOH C . F 3 HOH 3 119 4 HOH HOH C . F 3 HOH 4 120 5 HOH HOH C . F 3 HOH 5 121 6 HOH HOH C . F 3 HOH 6 122 10 HOH HOH C . F 3 HOH 7 123 11 HOH HOH C . F 3 HOH 8 124 17 HOH HOH C . F 3 HOH 9 125 19 HOH HOH C . F 3 HOH 10 126 23 HOH HOH C . F 3 HOH 11 127 24 HOH HOH C . F 3 HOH 12 128 26 HOH HOH C . F 3 HOH 13 129 28 HOH HOH C . F 3 HOH 14 130 31 HOH HOH C . F 3 HOH 15 131 32 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 47.3525000000 0.0000000000 -1.0000000000 0.0000000000 -82.0169358654 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 128 ? E HOH . 2 1 C HOH 123 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-16 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ncs_dom_lim 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 4 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.497 _diffrn_reflns.pdbx_d_res_low 82.017 _diffrn_reflns.pdbx_number_obs 10308 _diffrn_reflns.pdbx_Rmerge_I_obs 0.111 _diffrn_reflns.pdbx_Rsym_value 0.111 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 6.50 _diffrn_reflns.pdbx_redundancy 5.00 _diffrn_reflns.pdbx_percent_possible_obs 99.50 _diffrn_reflns.number 51332 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 7.89 47.02 346 ? 0.041 0.041 ? 5.10 99.50 1 5.58 7.89 617 ? 0.064 0.064 ? 5.50 100.00 1 4.55 5.58 792 ? 0.057 0.057 ? 5.50 100.00 1 3.94 4.55 913 ? 0.060 0.060 ? 5.50 100.00 1 3.53 3.94 1046 ? 0.086 0.086 ? 5.50 100.00 1 3.22 3.53 1148 ? 0.109 0.109 ? 5.50 100.00 1 2.98 3.22 1241 ? 0.183 0.183 ? 5.40 100.00 1 2.79 2.98 1333 ? 0.285 0.285 ? 5.40 100.00 1 2.63 2.79 1423 ? 0.368 0.368 ? 4.70 100.00 1 2.49 2.63 1449 ? 0.457 0.457 ? 2.90 96.70 # _pdbx_phasing_MR.entry_id 2GPZ _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 41.010 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 41.010 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 53 ? ? 53.58 73.51 2 1 GLU A 55 ? ? -56.90 99.64 3 1 TRP C 53 ? ? 53.18 74.52 4 1 GLU C 55 ? ? -57.22 99.67 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 7 ? CD1 ? A LEU 3 CD1 2 1 Y 1 A LEU 7 ? CD2 ? A LEU 3 CD2 3 1 Y 1 A LYS 30 ? CE ? A LYS 26 CE 4 1 Y 1 A LYS 30 ? NZ ? A LYS 26 NZ 5 1 Y 1 A LYS 31 ? CB ? A LYS 27 CB 6 1 Y 1 A LYS 31 ? CG ? A LYS 27 CG 7 1 Y 1 A LYS 31 ? CD ? A LYS 27 CD 8 1 Y 1 A LYS 31 ? CE ? A LYS 27 CE 9 1 Y 1 A LYS 31 ? NZ ? A LYS 27 NZ 10 1 Y 1 A ASP 32 ? CG ? A ASP 28 CG 11 1 Y 1 A ASP 32 ? OD1 ? A ASP 28 OD1 12 1 Y 1 A ASP 32 ? OD2 ? A ASP 28 OD2 13 1 Y 1 A LYS 56 ? CE ? A LYS 52 CE 14 1 Y 1 A LYS 56 ? NZ ? A LYS 52 NZ 15 1 Y 1 A GLN 71 ? CG ? A GLN 67 CG 16 1 Y 1 A GLN 71 ? CD ? A GLN 67 CD 17 1 Y 1 A GLN 71 ? NE2 ? A GLN 67 NE2 18 1 Y 1 A GLU 74 ? CD ? A GLU 70 CD 19 1 Y 1 A GLU 74 ? OE2 ? A GLU 70 OE2 20 1 Y 1 A ASP 79 ? OD1 ? A ASP 75 OD1 21 1 Y 1 A ASP 79 ? OD2 ? A ASP 75 OD2 22 1 Y 1 A LYS 93 ? NZ ? A LYS 89 NZ 23 1 Y 1 C LEU 7 ? CD1 ? B LEU 3 CD1 24 1 Y 1 C LEU 7 ? CD2 ? B LEU 3 CD2 25 1 Y 1 C LYS 30 ? CE ? B LYS 26 CE 26 1 Y 1 C LYS 30 ? NZ ? B LYS 26 NZ 27 1 Y 1 C LYS 31 ? CB ? B LYS 27 CB 28 1 Y 1 C LYS 31 ? CG ? B LYS 27 CG 29 1 Y 1 C LYS 31 ? CD ? B LYS 27 CD 30 1 Y 1 C LYS 31 ? CE ? B LYS 27 CE 31 1 Y 1 C LYS 31 ? NZ ? B LYS 27 NZ 32 1 Y 1 C ASP 32 ? CG ? B ASP 28 CG 33 1 Y 1 C ASP 32 ? OD1 ? B ASP 28 OD1 34 1 Y 1 C ASP 32 ? OD2 ? B ASP 28 OD2 35 1 Y 1 C LYS 56 ? CE ? B LYS 52 CE 36 1 Y 1 C LYS 56 ? NZ ? B LYS 52 NZ 37 1 Y 1 C GLN 71 ? CG ? B GLN 67 CG 38 1 Y 1 C GLN 71 ? CD ? B GLN 67 CD 39 1 Y 1 C GLN 71 ? NE2 ? B GLN 67 NE2 40 1 Y 1 C GLU 74 ? CD ? B GLU 70 CD 41 1 Y 1 C GLU 74 ? OE2 ? B GLU 70 OE2 42 1 Y 1 C ASP 79 ? OD1 ? B ASP 75 OD1 43 1 Y 1 C ASP 79 ? OD2 ? B ASP 75 OD2 44 1 Y 1 C LYS 93 ? NZ ? B LYS 89 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 33 ? A ASN 29 2 1 Y 1 C ASN 33 ? B ASN 29 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 SO4 S S N N 290 SO4 O1 O N N 291 SO4 O2 O N N 292 SO4 O3 O N N 293 SO4 O4 O N N 294 THR N N N N 295 THR CA C N S 296 THR C C N N 297 THR O O N N 298 THR CB C N R 299 THR OG1 O N N 300 THR CG2 C N N 301 THR OXT O N N 302 THR H H N N 303 THR H2 H N N 304 THR HA H N N 305 THR HB H N N 306 THR HG1 H N N 307 THR HG21 H N N 308 THR HG22 H N N 309 THR HG23 H N N 310 THR HXT H N N 311 TRP N N N N 312 TRP CA C N S 313 TRP C C N N 314 TRP O O N N 315 TRP CB C N N 316 TRP CG C Y N 317 TRP CD1 C Y N 318 TRP CD2 C Y N 319 TRP NE1 N Y N 320 TRP CE2 C Y N 321 TRP CE3 C Y N 322 TRP CZ2 C Y N 323 TRP CZ3 C Y N 324 TRP CH2 C Y N 325 TRP OXT O N N 326 TRP H H N N 327 TRP H2 H N N 328 TRP HA H N N 329 TRP HB2 H N N 330 TRP HB3 H N N 331 TRP HD1 H N N 332 TRP HE1 H N N 333 TRP HE3 H N N 334 TRP HZ2 H N N 335 TRP HZ3 H N N 336 TRP HH2 H N N 337 TRP HXT H N N 338 TYR N N N N 339 TYR CA C N S 340 TYR C C N N 341 TYR O O N N 342 TYR CB C N N 343 TYR CG C Y N 344 TYR CD1 C Y N 345 TYR CD2 C Y N 346 TYR CE1 C Y N 347 TYR CE2 C Y N 348 TYR CZ C Y N 349 TYR OH O N N 350 TYR OXT O N N 351 TYR H H N N 352 TYR H2 H N N 353 TYR HA H N N 354 TYR HB2 H N N 355 TYR HB3 H N N 356 TYR HD1 H N N 357 TYR HD2 H N N 358 TYR HE1 H N N 359 TYR HE2 H N N 360 TYR HH H N N 361 TYR HXT H N N 362 VAL N N N N 363 VAL CA C N S 364 VAL C C N N 365 VAL O O N N 366 VAL CB C N N 367 VAL CG1 C N N 368 VAL CG2 C N N 369 VAL OXT O N N 370 VAL H H N N 371 VAL H2 H N N 372 VAL HA H N N 373 VAL HB H N N 374 VAL HG11 H N N 375 VAL HG12 H N N 376 VAL HG13 H N N 377 VAL HG21 H N N 378 VAL HG22 H N N 379 VAL HG23 H N N 380 VAL HXT H N N 381 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 SO4 S O1 doub N N 277 SO4 S O2 doub N N 278 SO4 S O3 sing N N 279 SO4 S O4 sing N N 280 THR N CA sing N N 281 THR N H sing N N 282 THR N H2 sing N N 283 THR CA C sing N N 284 THR CA CB sing N N 285 THR CA HA sing N N 286 THR C O doub N N 287 THR C OXT sing N N 288 THR CB OG1 sing N N 289 THR CB CG2 sing N N 290 THR CB HB sing N N 291 THR OG1 HG1 sing N N 292 THR CG2 HG21 sing N N 293 THR CG2 HG22 sing N N 294 THR CG2 HG23 sing N N 295 THR OXT HXT sing N N 296 TRP N CA sing N N 297 TRP N H sing N N 298 TRP N H2 sing N N 299 TRP CA C sing N N 300 TRP CA CB sing N N 301 TRP CA HA sing N N 302 TRP C O doub N N 303 TRP C OXT sing N N 304 TRP CB CG sing N N 305 TRP CB HB2 sing N N 306 TRP CB HB3 sing N N 307 TRP CG CD1 doub Y N 308 TRP CG CD2 sing Y N 309 TRP CD1 NE1 sing Y N 310 TRP CD1 HD1 sing N N 311 TRP CD2 CE2 doub Y N 312 TRP CD2 CE3 sing Y N 313 TRP NE1 CE2 sing Y N 314 TRP NE1 HE1 sing N N 315 TRP CE2 CZ2 sing Y N 316 TRP CE3 CZ3 doub Y N 317 TRP CE3 HE3 sing N N 318 TRP CZ2 CH2 doub Y N 319 TRP CZ2 HZ2 sing N N 320 TRP CZ3 CH2 sing Y N 321 TRP CZ3 HZ3 sing N N 322 TRP CH2 HH2 sing N N 323 TRP OXT HXT sing N N 324 TYR N CA sing N N 325 TYR N H sing N N 326 TYR N H2 sing N N 327 TYR CA C sing N N 328 TYR CA CB sing N N 329 TYR CA HA sing N N 330 TYR C O doub N N 331 TYR C OXT sing N N 332 TYR CB CG sing N N 333 TYR CB HB2 sing N N 334 TYR CB HB3 sing N N 335 TYR CG CD1 doub Y N 336 TYR CG CD2 sing Y N 337 TYR CD1 CE1 sing Y N 338 TYR CD1 HD1 sing N N 339 TYR CD2 CE2 doub Y N 340 TYR CD2 HD2 sing N N 341 TYR CE1 CZ doub Y N 342 TYR CE1 HE1 sing N N 343 TYR CE2 CZ sing Y N 344 TYR CE2 HE2 sing N N 345 TYR CZ OH sing N N 346 TYR OH HH sing N N 347 TYR OXT HXT sing N N 348 VAL N CA sing N N 349 VAL N H sing N N 350 VAL N H2 sing N N 351 VAL CA C sing N N 352 VAL CA CB sing N N 353 VAL CA HA sing N N 354 VAL C O doub N N 355 VAL C OXT sing N N 356 VAL CB CG1 sing N N 357 VAL CB CG2 sing N N 358 VAL CB HB sing N N 359 VAL CG1 HG11 sing N N 360 VAL CG1 HG12 sing N N 361 VAL CG1 HG13 sing N N 362 VAL CG2 HG21 sing N N 363 VAL CG2 HG22 sing N N 364 VAL CG2 HG23 sing N N 365 VAL OXT HXT sing N N 366 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SN0 _pdbx_initial_refinement_model.details 'PDB ENTRY 1SN0' #