HEADER TRANSPORT PROTEIN 20-APR-06 2GQE TITLE MOLECULAR CHARACTERIZATION OF THE RAN BINDING ZINC FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND ZINC FINGER, RESIDUES 722-750; COMPND 5 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUP153; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T VARIANT WITH TEV CLEAVAGE SITE KEYWDS ZINC FINGER, RAN, NUCLEAR PORE, ZINC KNUCKLE, NUCLEOPORIN, PORE, KEYWDS 2 TRANSPORT, NUP153, NUP358, RANBP2, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.M.HIGA,S.L.ALAM,W.I.SUNDQUIST,K.S.ULLMAN REVDAT 4 09-MAR-22 2GQE 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2GQE 1 VERSN REVDAT 2 12-JUN-07 2GQE 1 JRNL REVDAT 1 10-APR-07 2GQE 0 JRNL AUTH M.M.HIGA,S.L.ALAM,W.I.SUNDQUIST,K.S.ULLMAN JRNL TITL MOLECULAR CHARACTERIZATION OF THE RAN-BINDING ZINC FINGER JRNL TITL 2 DOMAIN OF NUP153. JRNL REF J.BIOL.CHEM. V. 282 17090 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17426026 JRNL DOI 10.1074/JBC.M702715200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USING CYANA AUTOMATED NOESY ASSIGNMENTS REMARK 4 REMARK 4 2GQE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037426. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 70MM, 20MM TRIS, 50MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3 MM HZNF2 U-15N, 13C, 20MM D REMARK 210 -TRIS, PH 7.0, 50MM NACL, 1MM D- REMARK 210 BME, 10 MICROMOLR ZNCL2, 90%H2O, REMARK 210 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 3D_15N-SEPARATED_NOESY; REMARK 210 HNHA; HNCO; HN(CO)CA; HNCACB; REMARK 210 CBCA(CO)NH; HNHB; HN(CO)HB; LRCC; REMARK 210 HSQC; HSQC-TROSY; HCCH-TOCSY; REMARK 210 (H)C(CO)NH-TOCSY; H(CCO)NH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, FELIX, SPARKY 3.11.2, REMARK 210 VNMR 2.3C REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION, LEAST REMARK 210 VIOLATIONS, FAVORABLE NON-BONDED REMARK 210 ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 4 -179.14 -51.60 REMARK 500 1 THR A 11 -36.73 -130.41 REMARK 500 1 LEU A 13 75.55 61.95 REMARK 500 1 ALA A 25 -43.77 -135.84 REMARK 500 2 CYS A 9 175.80 -58.74 REMARK 500 2 THR A 11 -54.65 -127.29 REMARK 500 2 LEU A 13 71.67 72.31 REMARK 500 2 ALA A 25 -45.63 -134.47 REMARK 500 2 GLU A 27 47.97 70.55 REMARK 500 3 HIS A 1 -175.82 -175.34 REMARK 500 3 THR A 11 -36.40 -130.73 REMARK 500 3 LEU A 13 76.09 61.56 REMARK 500 3 ALA A 25 -41.20 -135.46 REMARK 500 4 HIS A 1 49.41 -107.75 REMARK 500 4 THR A 6 148.41 -179.60 REMARK 500 4 THR A 11 -53.13 -120.56 REMARK 500 4 LEU A 13 82.54 62.04 REMARK 500 4 ALA A 25 -45.55 -133.51 REMARK 500 5 ILE A 4 52.19 -90.10 REMARK 500 5 THR A 6 138.71 -38.96 REMARK 500 5 LEU A 13 90.92 57.07 REMARK 500 5 VAL A 14 136.02 -171.62 REMARK 500 5 ALA A 25 -46.89 -131.23 REMARK 500 6 THR A 6 141.07 -36.33 REMARK 500 6 CYS A 9 172.91 -59.67 REMARK 500 6 THR A 11 -36.85 -131.74 REMARK 500 6 LEU A 13 76.95 60.90 REMARK 500 6 ALA A 25 -46.48 -136.64 REMARK 500 6 GLU A 27 36.84 70.08 REMARK 500 7 LEU A 13 90.48 62.91 REMARK 500 7 ALA A 25 -46.69 -132.02 REMARK 500 8 LEU A 13 85.56 57.81 REMARK 500 8 ALA A 25 -44.73 -132.51 REMARK 500 9 LEU A 13 92.52 54.70 REMARK 500 9 ALA A 25 -43.62 -130.93 REMARK 500 9 GLU A 27 46.67 70.59 REMARK 500 10 THR A 11 -55.78 -126.42 REMARK 500 10 LEU A 13 74.42 70.34 REMARK 500 10 ALA A 25 -45.53 -140.90 REMARK 500 10 GLU A 27 43.33 71.82 REMARK 500 11 LEU A 13 80.89 62.09 REMARK 500 11 ALA A 25 -45.62 -136.50 REMARK 500 12 MET A 2 171.42 -59.73 REMARK 500 12 ILE A 4 53.90 -94.44 REMARK 500 12 THR A 6 133.98 -36.59 REMARK 500 12 THR A 11 -59.67 -124.58 REMARK 500 12 LEU A 13 74.96 71.62 REMARK 500 12 ALA A 25 -45.36 -140.64 REMARK 500 12 GLU A 27 46.00 71.19 REMARK 500 13 THR A 6 148.46 -179.19 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 32 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 12 SG 109.4 REMARK 620 3 CYS A 23 SG 109.5 109.5 REMARK 620 4 CYS A 26 SG 109.4 109.5 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 32 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NJ3 RELATED DB: PDB REMARK 900 STRUCTURE AND UBIQUITIN INTERACTIONS OF THE CONSERVED NZF DOMAIN OF REMARK 900 NPL4 REMARK 900 RELATED ID: 1Q5W RELATED DB: PDB REMARK 900 UBIQUITIN RECOGNITION BY NPL4 ZINC-FINGERS REMARK 900 RELATED ID: 5669 RELATED DB: BMRB REMARK 900 STRUCTURE AND UBIQUITIN INTERACTIONS OF THE CONSERVED NZF DOMAIN OF REMARK 900 NPL4 REMARK 900 RELATED ID: 7158 RELATED DB: BMRB DBREF 2GQE A 3 31 UNP P49790 NU153_HUMAN 722 750 SEQADV 2GQE GLY A 0 UNP P49790 CLONING ARTIFACT SEQADV 2GQE HIS A 1 UNP P49790 CLONING ARTIFACT SEQADV 2GQE MET A 2 UNP P49790 CLONING ARTIFACT SEQRES 1 A 32 GLY HIS MET VAL ILE GLY THR TRP ASP CYS ASP THR CYS SEQRES 2 A 32 LEU VAL GLN ASN LYS PRO GLU ALA ILE LYS CYS VAL ALA SEQRES 3 A 32 CYS GLU THR PRO LYS PRO HET ZN A 32 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ SHEET 1 A 2 TRP A 7 ASP A 8 0 SHEET 2 A 2 GLN A 15 ASN A 16 -1 O ASN A 16 N TRP A 7 LINK SG CYS A 9 ZN ZN A 32 1555 1555 2.40 LINK SG CYS A 12 ZN ZN A 32 1555 1555 2.40 LINK SG CYS A 23 ZN ZN A 32 1555 1555 2.40 LINK SG CYS A 26 ZN ZN A 32 1555 1555 2.40 SITE 1 AC1 4 CYS A 9 CYS A 12 CYS A 23 CYS A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1