HEADER TRANSCRIPTION 21-APR-06 2GQQ TITLE CRYSTAL STRUCTURE OF E. COLI LEUCINE-RESPONSIVE REGULATORY PROTEIN TITLE 2 (LRP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-RESPONSIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: LRP, ALSB, IHB, LIVR, OPPI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJWD1 KEYWDS HELIX-TURN-HELIX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.DE LOS RIOS,J.J.PERONA REVDAT 4 14-FEB-24 2GQQ 1 REMARK REVDAT 3 13-JUL-11 2GQQ 1 VERSN REVDAT 2 24-FEB-09 2GQQ 1 VERSN REVDAT 1 06-MAR-07 2GQQ 0 JRNL AUTH S.DE LOS RIOS,J.J.PERONA JRNL TITL STRUCTURE OF THE ESCHERICHIA COLI LEUCINE-RESPONSIVE JRNL TITL 2 REGULATORY PROTEIN LRP REVEALS A NOVEL OCTAMERIC ASSEMBLY. JRNL REF J.MOL.BIOL. V. 366 1589 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17223133 JRNL DOI 10.1016/J.JMB.2006.12.032 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1406 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-01; 02-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL7-1; BL11-3 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.08; 0.975 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15185 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MES PH 5.6, 0.01M MAGNESIUM REMARK 280 CHLORIDE, 0.4M POTASSIUM CHLORIDE, 9% PEG 8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.05000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 118.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.05000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 118.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.80000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 118.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.05000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 118.50000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE OCTAMER IS GENERATED FROM THE TETRAMER ALONG THE 2-FOLD REMARK 300 AXIS: REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 100.10000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.80000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 ASP A 11 REMARK 465 VAL B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 465 LYS B 10 REMARK 465 ASP B 11 REMARK 465 THR B 163 REMARK 465 ARG B 164 REMARK 465 VAL C 2 REMARK 465 ASP C 3 REMARK 465 SER C 4 REMARK 465 LYS C 5 REMARK 465 LYS C 6 REMARK 465 ARG C 7 REMARK 465 VAL D 2 REMARK 465 ASP D 3 REMARK 465 SER D 4 REMARK 465 LYS D 5 REMARK 465 LYS D 6 REMARK 465 ARG D 7 REMARK 465 PRO D 8 REMARK 465 GLY D 9 REMARK 465 LYS D 10 REMARK 465 ASP D 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 29 CG1 CG2 CD1 REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 40 CG CD1 CD2 REMARK 470 SER A 41 OG REMARK 470 THR A 43 OG1 CG2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 55 CG CD OE1 NE2 REMARK 470 ILE A 58 CG1 CG2 CD1 REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 LEU A 65 CG CD1 CD2 REMARK 470 ASN A 66 CG OD1 ND2 REMARK 470 HIS A 68 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 73 OG REMARK 470 LEU A 82 CG CD1 CD2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 VAL A 89 CG1 CG2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 VAL A 121 CG1 CG2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 THR A 134 OG1 CG2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 SER A 156 OG REMARK 470 ASN A 157 CG OD1 ND2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 159 CG CD1 CD2 REMARK 470 VAL A 160 CG1 CG2 REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 THR A 163 OG1 CG2 REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 12 CG CD1 CD2 REMARK 470 ILE B 15 CG1 CG2 CD1 REMARK 470 ASN B 18 CG OD1 ND2 REMARK 470 ILE B 19 CG1 CG2 CD1 REMARK 470 LEU B 23 CG CD1 CD2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 29 CG1 CG2 CD1 REMARK 470 SER B 30 OG REMARK 470 ASN B 31 CG OD1 ND2 REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 SER B 35 OG REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LEU B 40 CG CD1 CD2 REMARK 470 SER B 41 OG REMARK 470 THR B 43 OG1 CG2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 58 CG1 CG2 CD1 REMARK 470 HIS B 68 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 73 OG REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 VAL B 89 CG1 CG2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 ASP B 123 CG OD1 OD2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 LEU B 131 CG CD1 CD2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 LEU B 136 CG CD1 CD2 REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 GLN B 155 CG CD OE1 NE2 REMARK 470 SER B 156 OG REMARK 470 ASN B 157 CG OD1 ND2 REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 VAL B 160 CG1 CG2 REMARK 470 ILE B 161 CG1 CG2 CD1 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 PRO C 8 CG CD REMARK 470 ASP C 11 CG OD1 OD2 REMARK 470 ARG C 14 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 59 CG CD OE1 NE2 REMARK 470 ASN C 66 CG OD1 ND2 REMARK 470 SER C 73 OG REMARK 470 ARG C 84 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 88 CG OD1 OD2 REMARK 470 GLU C 91 CG CD OE1 OE2 REMARK 470 GLN C 92 CG CD OE1 NE2 REMARK 470 ASN C 94 CG OD1 ND2 REMARK 470 THR C 95 OG1 CG2 REMARK 470 VAL C 97 CG1 CG2 REMARK 470 LYS C 99 CG CD CE NZ REMARK 470 GLU C 101 CG CD OE1 OE2 REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 ARG C 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 ARG C 137 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 152 CG CD OE1 OE2 REMARK 470 LYS C 154 CG CD CE NZ REMARK 470 GLN C 155 CG CD OE1 NE2 REMARK 470 SER C 156 OG REMARK 470 ASN C 157 CG OD1 ND2 REMARK 470 ARG C 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 159 CG CD1 CD2 REMARK 470 VAL C 160 CG1 CG2 REMARK 470 ILE C 161 CG1 CG2 CD1 REMARK 470 LYS C 162 CG CD CE NZ REMARK 470 THR C 163 OG1 CG2 REMARK 470 ARG C 164 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 14 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 15 CG1 CG2 CD1 REMARK 470 ARG D 17 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 18 CG OD1 ND2 REMARK 470 ILE D 19 CG1 CG2 CD1 REMARK 470 LYS D 25 CG CD CE NZ REMARK 470 LEU D 34 CG CD1 CD2 REMARK 470 LYS D 36 CG CD CE NZ REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 ARG D 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 54 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 59 CG CD OE1 NE2 REMARK 470 ASN D 66 CG OD1 ND2 REMARK 470 HIS D 68 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 74 CG CD1 CD2 REMARK 470 ASN D 83 CG OD1 ND2 REMARK 470 ARG D 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 99 CG CD CE NZ REMARK 470 GLU D 101 CG CD OE1 OE2 REMARK 470 GLN D 104 CG CD OE1 NE2 REMARK 470 LYS D 118 CG CD CE NZ REMARK 470 ARG D 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 ARG D 137 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 151 CG CD OE1 OE2 REMARK 470 LYS D 154 CG CD CE NZ REMARK 470 GLN D 155 CG CD OE1 NE2 REMARK 470 SER D 156 OG REMARK 470 ASN D 157 CG OD1 ND2 REMARK 470 ARG D 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 159 CG CD1 CD2 REMARK 470 VAL D 160 CG1 CG2 REMARK 470 ILE D 161 CG1 CG2 CD1 REMARK 470 LYS D 162 CG CD CE NZ REMARK 470 THR D 163 OG1 CG2 REMARK 470 ARG D 164 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG C 17 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 17 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -69.20 -104.37 REMARK 500 ASP A 26 96.04 -173.98 REMARK 500 LYS A 36 -62.06 -104.67 REMARK 500 PRO A 42 -89.52 -35.49 REMARK 500 LEU A 46 -19.61 -157.68 REMARK 500 GLN A 55 -79.52 -66.69 REMARK 500 ALA A 72 46.98 -161.90 REMARK 500 THR A 95 44.38 -77.55 REMARK 500 ALA A 96 -20.92 -157.42 REMARK 500 GLN A 104 -78.56 -76.86 REMARK 500 ASP A 112 -84.85 -61.46 REMARK 500 GLU A 133 -8.19 -159.08 REMARK 500 THR A 134 -2.18 -173.36 REMARK 500 LEU A 135 -68.11 -109.88 REMARK 500 PRO A 139 97.67 -46.91 REMARK 500 VAL A 141 128.19 -177.58 REMARK 500 GLU A 151 101.73 -160.81 REMARK 500 GLN A 155 95.96 -161.15 REMARK 500 THR A 163 -79.18 -20.64 REMARK 500 ARG B 28 45.16 -88.19 REMARK 500 SER B 35 45.53 -80.57 REMARK 500 LYS B 36 -59.78 -141.83 REMARK 500 PRO B 42 -4.70 -55.11 REMARK 500 THR B 43 -52.54 -122.28 REMARK 500 PRO B 44 -70.14 -38.07 REMARK 500 PHE B 57 -73.12 -45.93 REMARK 500 PRO B 67 -17.81 -46.92 REMARK 500 TYR B 69 -71.17 -100.05 REMARK 500 ASP B 71 95.65 -46.54 REMARK 500 ALA B 72 29.72 173.25 REMARK 500 PRO B 87 -31.97 -34.95 REMARK 500 ALA B 96 -38.14 -166.14 REMARK 500 LYS B 99 5.25 -67.71 REMARK 500 GLU B 102 22.81 -71.26 REMARK 500 CYS B 106 123.29 -174.82 REMARK 500 PRO B 122 -71.43 -72.38 REMARK 500 THR B 134 -52.27 -139.02 REMARK 500 ASN B 142 -32.48 -130.06 REMARK 500 GLU B 151 119.34 -165.73 REMARK 500 GLN B 155 96.51 -161.35 REMARK 500 LYS C 10 -51.63 70.35 REMARK 500 ASP C 13 132.12 -39.13 REMARK 500 GLN C 55 -71.34 -40.10 REMARK 500 PRO C 67 0.62 -61.00 REMARK 500 ASP C 71 91.23 -46.99 REMARK 500 ALA C 72 16.07 -179.20 REMARK 500 ALA C 86 55.50 -146.95 REMARK 500 PRO C 87 64.86 -7.94 REMARK 500 ASP C 88 -8.58 173.52 REMARK 500 THR C 95 44.77 -75.56 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2GQQ A 2 164 UNP P0ACJ0 LRP_ECOLI 1 163 DBREF 2GQQ B 2 164 UNP P0ACJ0 LRP_ECOLI 1 163 DBREF 2GQQ C 2 164 UNP P0ACJ0 LRP_ECOLI 1 163 DBREF 2GQQ D 2 164 UNP P0ACJ0 LRP_ECOLI 1 163 SEQRES 1 A 163 VAL ASP SER LYS LYS ARG PRO GLY LYS ASP LEU ASP ARG SEQRES 2 A 163 ILE ASP ARG ASN ILE LEU ASN GLU LEU GLN LYS ASP GLY SEQRES 3 A 163 ARG ILE SER ASN VAL GLU LEU SER LYS ARG VAL GLY LEU SEQRES 4 A 163 SER PRO THR PRO CYS LEU GLU ARG VAL ARG ARG LEU GLU SEQRES 5 A 163 ARG GLN GLY PHE ILE GLN GLY TYR THR ALA LEU LEU ASN SEQRES 6 A 163 PRO HIS TYR LEU ASP ALA SER LEU LEU VAL PHE VAL GLU SEQRES 7 A 163 ILE THR LEU ASN ARG GLY ALA PRO ASP VAL PHE GLU GLN SEQRES 8 A 163 PHE ASN THR ALA VAL GLN LYS LEU GLU GLU ILE GLN GLU SEQRES 9 A 163 CYS HIS LEU VAL SER GLY ASP PHE ASP TYR LEU LEU LYS SEQRES 10 A 163 THR ARG VAL PRO ASP MET SER ALA TYR ARG LYS LEU LEU SEQRES 11 A 163 GLY GLU THR LEU LEU ARG LEU PRO GLY VAL ASN ASP THR SEQRES 12 A 163 ARG THR TYR VAL VAL MET GLU GLU VAL LYS GLN SER ASN SEQRES 13 A 163 ARG LEU VAL ILE LYS THR ARG SEQRES 1 B 163 VAL ASP SER LYS LYS ARG PRO GLY LYS ASP LEU ASP ARG SEQRES 2 B 163 ILE ASP ARG ASN ILE LEU ASN GLU LEU GLN LYS ASP GLY SEQRES 3 B 163 ARG ILE SER ASN VAL GLU LEU SER LYS ARG VAL GLY LEU SEQRES 4 B 163 SER PRO THR PRO CYS LEU GLU ARG VAL ARG ARG LEU GLU SEQRES 5 B 163 ARG GLN GLY PHE ILE GLN GLY TYR THR ALA LEU LEU ASN SEQRES 6 B 163 PRO HIS TYR LEU ASP ALA SER LEU LEU VAL PHE VAL GLU SEQRES 7 B 163 ILE THR LEU ASN ARG GLY ALA PRO ASP VAL PHE GLU GLN SEQRES 8 B 163 PHE ASN THR ALA VAL GLN LYS LEU GLU GLU ILE GLN GLU SEQRES 9 B 163 CYS HIS LEU VAL SER GLY ASP PHE ASP TYR LEU LEU LYS SEQRES 10 B 163 THR ARG VAL PRO ASP MET SER ALA TYR ARG LYS LEU LEU SEQRES 11 B 163 GLY GLU THR LEU LEU ARG LEU PRO GLY VAL ASN ASP THR SEQRES 12 B 163 ARG THR TYR VAL VAL MET GLU GLU VAL LYS GLN SER ASN SEQRES 13 B 163 ARG LEU VAL ILE LYS THR ARG SEQRES 1 C 163 VAL ASP SER LYS LYS ARG PRO GLY LYS ASP LEU ASP ARG SEQRES 2 C 163 ILE ASP ARG ASN ILE LEU ASN GLU LEU GLN LYS ASP GLY SEQRES 3 C 163 ARG ILE SER ASN VAL GLU LEU SER LYS ARG VAL GLY LEU SEQRES 4 C 163 SER PRO THR PRO CYS LEU GLU ARG VAL ARG ARG LEU GLU SEQRES 5 C 163 ARG GLN GLY PHE ILE GLN GLY TYR THR ALA LEU LEU ASN SEQRES 6 C 163 PRO HIS TYR LEU ASP ALA SER LEU LEU VAL PHE VAL GLU SEQRES 7 C 163 ILE THR LEU ASN ARG GLY ALA PRO ASP VAL PHE GLU GLN SEQRES 8 C 163 PHE ASN THR ALA VAL GLN LYS LEU GLU GLU ILE GLN GLU SEQRES 9 C 163 CYS HIS LEU VAL SER GLY ASP PHE ASP TYR LEU LEU LYS SEQRES 10 C 163 THR ARG VAL PRO ASP MET SER ALA TYR ARG LYS LEU LEU SEQRES 11 C 163 GLY GLU THR LEU LEU ARG LEU PRO GLY VAL ASN ASP THR SEQRES 12 C 163 ARG THR TYR VAL VAL MET GLU GLU VAL LYS GLN SER ASN SEQRES 13 C 163 ARG LEU VAL ILE LYS THR ARG SEQRES 1 D 163 VAL ASP SER LYS LYS ARG PRO GLY LYS ASP LEU ASP ARG SEQRES 2 D 163 ILE ASP ARG ASN ILE LEU ASN GLU LEU GLN LYS ASP GLY SEQRES 3 D 163 ARG ILE SER ASN VAL GLU LEU SER LYS ARG VAL GLY LEU SEQRES 4 D 163 SER PRO THR PRO CYS LEU GLU ARG VAL ARG ARG LEU GLU SEQRES 5 D 163 ARG GLN GLY PHE ILE GLN GLY TYR THR ALA LEU LEU ASN SEQRES 6 D 163 PRO HIS TYR LEU ASP ALA SER LEU LEU VAL PHE VAL GLU SEQRES 7 D 163 ILE THR LEU ASN ARG GLY ALA PRO ASP VAL PHE GLU GLN SEQRES 8 D 163 PHE ASN THR ALA VAL GLN LYS LEU GLU GLU ILE GLN GLU SEQRES 9 D 163 CYS HIS LEU VAL SER GLY ASP PHE ASP TYR LEU LEU LYS SEQRES 10 D 163 THR ARG VAL PRO ASP MET SER ALA TYR ARG LYS LEU LEU SEQRES 11 D 163 GLY GLU THR LEU LEU ARG LEU PRO GLY VAL ASN ASP THR SEQRES 12 D 163 ARG THR TYR VAL VAL MET GLU GLU VAL LYS GLN SER ASN SEQRES 13 D 163 ARG LEU VAL ILE LYS THR ARG HELIX 1 1 ARG A 14 ASP A 26 1 13 HELIX 2 2 VAL A 32 LYS A 36 5 5 HELIX 3 3 ARG A 48 GLY A 56 1 9 HELIX 4 4 ASP A 88 GLN A 98 1 11 HELIX 5 5 ASP A 123 LEU A 131 1 9 HELIX 6 6 ILE B 15 ASP B 26 1 12 HELIX 7 7 SER B 30 VAL B 38 1 9 HELIX 8 8 GLU B 47 GLY B 56 1 10 HELIX 9 9 ASP B 88 GLN B 98 1 11 HELIX 10 10 ASP B 123 LEU B 131 1 9 HELIX 11 11 THR B 134 LEU B 138 5 5 HELIX 12 12 ASP C 13 ASP C 26 1 14 HELIX 13 13 SER C 30 GLY C 39 1 10 HELIX 14 14 SER C 41 GLY C 56 1 16 HELIX 15 15 ASP C 88 THR C 95 1 8 HELIX 16 16 ASP C 123 THR C 134 1 12 HELIX 17 17 ASP D 13 ASP D 26 1 14 HELIX 18 18 SER D 30 GLY D 39 1 10 HELIX 19 19 SER D 41 GLU D 47 1 7 HELIX 20 20 GLU D 47 GLN D 55 1 9 HELIX 21 21 ASP D 88 THR D 95 1 8 HELIX 22 22 ASP D 123 THR D 134 1 12 SHEET 1 A 2 ILE A 58 LEU A 65 0 SHEET 2 A 2 ILE B 58 LEU B 65 -1 O LEU B 64 N GLY A 60 SHEET 1 B 9 LEU A 75 THR A 81 0 SHEET 2 B 9 TYR A 115 ARG A 120 -1 O THR A 119 N VAL A 76 SHEET 3 B 9 ILE A 103 VAL A 109 -1 N GLU A 105 O LYS A 118 SHEET 4 B 9 VAL B 141 LYS B 154 -1 O LYS B 154 N CYS A 106 SHEET 5 B 9 LEU B 74 LEU B 82 -1 N GLU B 79 O ARG B 145 SHEET 6 B 9 TYR B 115 VAL B 121 -1 O VAL B 121 N LEU B 74 SHEET 7 B 9 ILE B 103 VAL B 109 -1 N GLU B 105 O LYS B 118 SHEET 8 B 9 ASP A 143 GLN A 155 -1 N MET A 150 O LEU B 108 SHEET 9 B 9 LEU A 75 THR A 81 -1 N GLU A 79 O ARG A 145 SHEET 1 C 2 ILE C 58 LEU C 65 0 SHEET 2 C 2 ILE D 58 LEU D 65 -1 O LEU D 64 N GLY C 60 SHEET 1 D 9 LEU C 74 THR C 81 0 SHEET 2 D 9 TYR C 115 VAL C 121 -1 O TYR C 115 N ILE C 80 SHEET 3 D 9 ILE C 103 VAL C 109 -1 N GLU C 105 O LYS C 118 SHEET 4 D 9 VAL D 141 GLN D 155 -1 O MET D 150 N LEU C 108 SHEET 5 D 9 LEU D 74 LEU D 82 -1 N GLU D 79 O ARG D 145 SHEET 6 D 9 TYR D 115 VAL D 121 -1 O THR D 119 N VAL D 76 SHEET 7 D 9 ILE D 103 VAL D 109 -1 N GLU D 105 O LYS D 118 SHEET 8 D 9 ASP C 143 GLN C 155 -1 N MET C 150 O LEU D 108 SHEET 9 D 9 LEU C 74 THR C 81 -1 N PHE C 77 O TYR C 147 CRYST1 100.100 237.000 75.600 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009990 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013228 0.00000