HEADER OXIDOREDUCTASE 22-APR-06 2GR0 TITLE CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM, NAD+ TITLE 2 COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERREDOXIN REDUCTASE BPHA4; COMPND 5 EC: 1.18.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. KKS102; SOURCE 3 ORGANISM_TAXID: 307; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SENDA,M.SENDA REVDAT 5 13-MAR-24 2GR0 1 REMARK REVDAT 4 13-JUL-11 2GR0 1 VERSN REVDAT 3 24-FEB-09 2GR0 1 VERSN REVDAT 2 16-OCT-07 2GR0 1 JRNL REVDAT 1 22-MAY-07 2GR0 0 JRNL AUTH M.SENDA,S.KISHIGAMI,S.KIMURA,M.FUKUDA,T.ISHIDA,T.SENDA JRNL TITL MOLECULAR MECHANISM OF THE REDOX-DEPENDENT INTERACTION JRNL TITL 2 BETWEEN NADH-DEPENDENT FERREDOXIN REDUCTASE AND RIESKE-TYPE JRNL TITL 3 [2FE-2S] FERREDOXIN JRNL REF J.MOL.BIOL. V. 373 382 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17850818 JRNL DOI 10.1016/J.JMB.2007.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 51060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3465 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : -1.02000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : -0.51000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3140 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4284 ; 1.385 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;29.385 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;11.413 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.136 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2382 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1462 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2140 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 257 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2047 ; 0.780 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3184 ; 1.162 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 1.921 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1099 ; 3.091 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 111 REMARK 3 RESIDUE RANGE : A 238 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7430 12.1380 11.9370 REMARK 3 T TENSOR REMARK 3 T11: -0.0096 T22: -0.0492 REMARK 3 T33: -0.0415 T12: 0.0086 REMARK 3 T13: 0.0137 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.7622 L22: 1.0396 REMARK 3 L33: 0.6384 L12: -0.3632 REMARK 3 L13: 0.1880 L23: 0.3720 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.0546 S13: 0.0174 REMARK 3 S21: 0.0768 S22: 0.0051 S23: 0.0565 REMARK 3 S31: 0.0297 S32: -0.0456 S33: 0.0337 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 81.1850 20.6900 4.8810 REMARK 3 T TENSOR REMARK 3 T11: -0.0446 T22: 0.0109 REMARK 3 T33: -0.0422 T12: -0.0393 REMARK 3 T13: 0.0071 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.4528 L22: 0.7361 REMARK 3 L33: 0.9343 L12: 0.1843 REMARK 3 L13: -0.1586 L23: -0.3121 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.0913 S13: -0.0349 REMARK 3 S21: -0.0081 S22: 0.0045 S23: -0.1028 REMARK 3 S31: -0.0770 S32: 0.1849 S33: 0.0465 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 318 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 74.7790 19.5700 32.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: -0.0450 REMARK 3 T33: -0.0783 T12: 0.0362 REMARK 3 T13: -0.0515 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.1729 L22: 2.3233 REMARK 3 L33: 3.7322 L12: -0.5114 REMARK 3 L13: -0.2826 L23: 1.6416 REMARK 3 S TENSOR REMARK 3 S11: -0.1881 S12: -0.3030 S13: 0.1127 REMARK 3 S21: 0.4740 S22: 0.0628 S23: -0.1212 REMARK 3 S31: 0.1772 S32: 0.1270 S33: 0.1253 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1449 A 1449 REMARK 3 ORIGIN FOR THE GROUP (A): 63.2390 12.9010 9.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0055 REMARK 3 T33: -0.0090 T12: 0.0180 REMARK 3 T13: 0.0001 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.5655 L22: 1.1612 REMARK 3 L33: 0.3233 L12: 0.7217 REMARK 3 L13: 0.3426 L23: 0.6039 REMARK 3 S TENSOR REMARK 3 S11: -0.0870 S12: 0.1809 S13: 0.0215 REMARK 3 S21: -0.0534 S22: 0.0831 S23: 0.0040 REMARK 3 S31: -0.0673 S32: 0.1657 S33: 0.0039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53813 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 5.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.08167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.16333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.62250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 142.70417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.54083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.08167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.16333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 142.70417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.62250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.54083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.54083 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 407 REMARK 465 ALA A 408 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 286 O HOH A 1641 1.39 REMARK 500 OG SER A 282 O HOH A 1641 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -120.94 -125.02 REMARK 500 ARG A 130 -42.62 -130.00 REMARK 500 ALA A 184 36.39 -145.53 REMARK 500 ASP A 252 88.77 -158.18 REMARK 500 GLU A 289 49.79 -102.04 REMARK 500 LYS A 351 109.05 -163.50 REMARK 500 ASN A 370 60.06 -151.86 REMARK 500 LYS A 386 71.42 -118.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GQW RELATED DB: PDB REMARK 900 RELATED ID: 2GQY RELATED DB: PDB REMARK 900 RELATED ID: 2GQZ RELATED DB: PDB REMARK 900 RELATED ID: 2GR1 RELATED DB: PDB REMARK 900 RELATED ID: 2GR2 RELATED DB: PDB REMARK 900 RELATED ID: 2GR3 RELATED DB: PDB DBREF 2GR0 A 1 408 GB 9929802 BAA04112 1 408 SEQRES 1 A 408 MET SER GLN GLU ALA LEU LYS ALA PRO VAL VAL VAL LEU SEQRES 2 A 408 GLY ALA GLY LEU ALA SER VAL SER PHE VAL ALA GLU LEU SEQRES 3 A 408 ARG GLN ALA GLY TYR GLN GLY LEU ILE THR VAL VAL GLY SEQRES 4 A 408 ASP GLU ALA GLU ARG PRO TYR ASP ARG PRO PRO LEU SER SEQRES 5 A 408 LYS ASP PHE MET ALA HIS GLY ASP ALA GLU LYS ILE ARG SEQRES 6 A 408 LEU ASP CYS LYS ARG ALA PRO GLU VAL GLU TRP LEU LEU SEQRES 7 A 408 GLY VAL THR ALA GLN SER PHE ASP PRO GLN ALA HIS THR SEQRES 8 A 408 VAL ALA LEU SER ASP GLY ARG THR LEU PRO TYR GLY THR SEQRES 9 A 408 LEU VAL LEU ALA THR GLY ALA ALA PRO ARG ALA LEU PRO SEQRES 10 A 408 THR LEU GLN GLY ALA THR MET PRO VAL HIS THR LEU ARG SEQRES 11 A 408 THR LEU GLU ASP ALA ARG ARG ILE GLN ALA GLY LEU ARG SEQRES 12 A 408 PRO GLN SER ARG LEU LEU ILE VAL GLY GLY GLY VAL ILE SEQRES 13 A 408 GLY LEU GLU LEU ALA ALA THR ALA ARG THR ALA GLY VAL SEQRES 14 A 408 HIS VAL SER LEU VAL GLU THR GLN PRO ARG LEU MET SER SEQRES 15 A 408 ARG ALA ALA PRO ALA THR LEU ALA ASP PHE VAL ALA ARG SEQRES 16 A 408 TYR HIS ALA ALA GLN GLY VAL ASP LEU ARG PHE GLU ARG SEQRES 17 A 408 SER VAL THR GLY SER VAL ASP GLY VAL VAL LEU LEU ASP SEQRES 18 A 408 ASP GLY THR ARG ILE ALA ALA ASP MET VAL VAL VAL GLY SEQRES 19 A 408 ILE GLY VAL LEU ALA ASN ASP ALA LEU ALA ARG ALA ALA SEQRES 20 A 408 GLY LEU ALA CYS ASP ASP GLY ILE PHE VAL ASP ALA TYR SEQRES 21 A 408 GLY ARG THR THR CYS PRO ASP VAL TYR ALA LEU GLY ASP SEQRES 22 A 408 VAL THR ARG GLN ARG ASN PRO LEU SER GLY ARG PHE GLU SEQRES 23 A 408 ARG ILE GLU THR TRP SER ASN ALA GLN ASN GLN GLY ILE SEQRES 24 A 408 ALA VAL ALA ARG HIS LEU VAL ASP PRO THR ALA PRO GLY SEQRES 25 A 408 TYR ALA GLU LEU PRO TRP TYR TRP SER ASP GLN GLY ALA SEQRES 26 A 408 LEU ARG ILE GLN VAL ALA GLY LEU ALA SER GLY ASP GLU SEQRES 27 A 408 GLU ILE VAL ARG GLY GLU VAL SER LEU ASP ALA PRO LYS SEQRES 28 A 408 PHE THR LEU ILE GLU LEU GLN LYS GLY ARG ILE VAL GLY SEQRES 29 A 408 ALA THR CYS VAL ASN ASN ALA ARG ASP PHE ALA PRO LEU SEQRES 30 A 408 ARG ARG LEU LEU ALA VAL GLY ALA LYS PRO ASP ARG ALA SEQRES 31 A 408 ALA LEU ALA ASP PRO ALA THR ASP LEU ARG LYS LEU ALA SEQRES 32 A 408 ALA ALA VAL ALA ALA HET FAD A1449 53 HET ADP A1001 27 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *302(H2 O) HELIX 1 1 GLY A 16 GLY A 30 1 15 HELIX 2 2 ARG A 48 SER A 52 5 5 HELIX 3 3 LYS A 53 GLY A 59 1 7 HELIX 4 4 ASP A 60 ILE A 64 5 5 HELIX 5 5 LEU A 116 GLN A 120 5 5 HELIX 6 6 THR A 131 GLY A 141 1 11 HELIX 7 7 GLY A 154 ALA A 167 1 14 HELIX 8 8 PRO A 186 GLN A 200 1 15 HELIX 9 9 ASP A 241 GLY A 248 1 8 HELIX 10 10 THR A 290 ASP A 307 1 18 HELIX 11 11 ASN A 370 VAL A 383 1 14 HELIX 12 12 ASP A 388 ASP A 394 1 7 HELIX 13 13 ASP A 398 VAL A 406 1 9 SHEET 1 A 5 GLU A 75 LEU A 78 0 SHEET 2 A 5 ILE A 35 GLY A 39 1 N VAL A 37 O LEU A 77 SHEET 3 A 5 VAL A 10 LEU A 13 1 N VAL A 12 O VAL A 38 SHEET 4 A 5 THR A 104 LEU A 107 1 O VAL A 106 N LEU A 13 SHEET 5 A 5 VAL A 268 ALA A 270 1 O TYR A 269 N LEU A 107 SHEET 1 B 3 ALA A 82 ASP A 86 0 SHEET 2 B 3 THR A 91 LEU A 94 -1 O ALA A 93 N GLN A 83 SHEET 3 B 3 THR A 99 PRO A 101 -1 O LEU A 100 N VAL A 92 SHEET 1 C 2 ALA A 111 PRO A 113 0 SHEET 2 C 2 VAL A 237 ALA A 239 -1 O LEU A 238 N ALA A 112 SHEET 1 D 5 VAL A 126 THR A 128 0 SHEET 2 D 5 MET A 230 VAL A 233 1 O VAL A 233 N HIS A 127 SHEET 3 D 5 ARG A 147 VAL A 151 1 N VAL A 151 O VAL A 232 SHEET 4 D 5 HIS A 170 GLU A 175 1 O HIS A 170 N LEU A 148 SHEET 5 D 5 ASP A 203 PHE A 206 1 O ARG A 205 N GLU A 175 SHEET 1 E 3 VAL A 210 VAL A 214 0 SHEET 2 E 3 VAL A 217 LEU A 220 -1 O LEU A 219 N GLY A 212 SHEET 3 E 3 ARG A 225 ALA A 227 -1 O ILE A 226 N VAL A 218 SHEET 1 F 3 ILE A 255 PHE A 256 0 SHEET 2 F 3 THR A 275 ASN A 279 1 O ARG A 276 N ILE A 255 SHEET 3 F 3 ARG A 284 GLU A 286 -1 O ARG A 284 N ASN A 279 SHEET 1 G 5 TRP A 318 GLN A 323 0 SHEET 2 G 5 LEU A 326 GLY A 332 -1 O ILE A 328 N SER A 321 SHEET 3 G 5 ARG A 361 VAL A 368 -1 O ALA A 365 N ALA A 331 SHEET 4 G 5 PHE A 352 GLN A 358 -1 N GLU A 356 O VAL A 363 SHEET 5 G 5 GLU A 338 ARG A 342 -1 N GLU A 338 O LEU A 357 CISPEP 1 ALA A 8 PRO A 9 0 -6.95 SITE 1 AC1 35 GLY A 14 GLY A 16 LEU A 17 ALA A 18 SITE 2 AC1 35 VAL A 38 ASP A 40 GLU A 41 ARG A 48 SITE 3 AC1 35 PRO A 49 SER A 52 LYS A 53 VAL A 80 SITE 4 AC1 35 ALA A 82 ALA A 108 THR A 109 GLY A 110 SITE 5 AC1 35 ARG A 130 ILE A 156 GLY A 272 ASP A 273 SITE 6 AC1 35 GLU A 289 THR A 290 TRP A 291 ALA A 294 SITE 7 AC1 35 TYR A 319 TRP A 320 HOH A1450 HOH A1451 SITE 8 AC1 35 HOH A1452 HOH A1456 HOH A1459 HOH A1478 SITE 9 AC1 35 HOH A1484 HOH A1486 HOH A1535 SITE 1 AC2 21 ARG A 114 LEU A 116 VAL A 151 GLY A 152 SITE 2 AC2 21 GLY A 153 GLY A 154 ILE A 156 GLU A 175 SITE 3 AC2 21 THR A 176 GLN A 177 SER A 182 ARG A 183 SITE 4 AC2 21 GLY A 234 ILE A 235 GLY A 236 HOH A1536 SITE 5 AC2 21 HOH A1646 HOH A1673 HOH A1684 HOH A1685 SITE 6 AC2 21 HOH A1696 CRYST1 98.283 98.283 171.245 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010175 0.005874 0.000000 0.00000 SCALE2 0.000000 0.011749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005840 0.00000