HEADER TRANSPORT PROTEIN 25-APR-06 2GRY TITLE CRYSTAL STRUCTURE OF THE HUMAN KIF2 MOTOR DOMAIN IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KIF2 MOTOR DOMAIN; COMPND 5 SYNONYM: KINESIN-2, HK2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF2, KNS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE-3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS KINESIN, MOTOR DOMAIN, ADP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2GRY 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2GRY 1 REMARK REVDAT 3 13-JUL-11 2GRY 1 VERSN REVDAT 2 24-FEB-09 2GRY 1 VERSN REVDAT 1 09-MAY-06 2GRY 0 JRNL AUTH J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN KIF2 MOTOR DOMAIN IN COMPLEX JRNL TITL 2 WITH ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.137 REMARK 3 FREE R VALUE TEST SET COUNT : 1077 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29700 REMARK 3 B22 (A**2) : 0.29700 REMARK 3 B33 (A**2) : -0.44600 REMARK 3 B12 (A**2) : 0.14900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2587 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3495 ; 1.394 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 6.419 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;33.455 ;22.778 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;14.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.281 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1897 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1102 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1728 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1688 ; 2.467 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2611 ; 3.518 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 2.814 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 3.862 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 523 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8090 -17.6670 26.4830 REMARK 3 T TENSOR REMARK 3 T11: -0.2625 T22: -0.2870 REMARK 3 T33: -0.2269 T12: 0.0190 REMARK 3 T13: -0.0104 T23: -0.1238 REMARK 3 L TENSOR REMARK 3 L11: 1.5763 L22: 2.0495 REMARK 3 L33: 2.2317 L12: 0.4409 REMARK 3 L13: 0.3256 L23: 0.2999 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0466 S13: 0.1486 REMARK 3 S21: -0.0625 S22: -0.1464 S23: 0.2995 REMARK 3 S31: -0.2207 S32: -0.1139 S33: 0.1549 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6050 -12.8570 15.0630 REMARK 3 T TENSOR REMARK 3 T11: -0.0223 T22: 0.0084 REMARK 3 T33: -0.0134 T12: -0.0013 REMARK 3 T13: -0.0648 T23: -0.0914 REMARK 3 L TENSOR REMARK 3 L11: 4.7492 L22: 28.4363 REMARK 3 L33: 21.0722 L12: -9.9937 REMARK 3 L13: 5.8366 L23: -2.1360 REMARK 3 S TENSOR REMARK 3 S11: 0.4346 S12: 1.0634 S13: -0.0347 REMARK 3 S21: -2.8463 S22: -2.4987 S23: 2.0907 REMARK 3 S31: -1.4136 S32: -0.8899 S33: 2.0640 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0850 -18.0260 -1.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.6113 T22: 0.4566 REMARK 3 T33: 0.4372 T12: 0.0349 REMARK 3 T13: -0.1766 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 16.6922 L22: 8.3559 REMARK 3 L33: 2.8057 L12: -2.9878 REMARK 3 L13: -3.2631 L23: 1.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.1748 S12: 0.7140 S13: 1.1778 REMARK 3 S21: -0.7353 S22: -0.2096 S23: -0.1683 REMARK 3 S31: -0.2989 S32: -0.9722 S33: 0.0347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1V8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.73750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.06681 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 58.56133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.73750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.06681 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 58.56133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.73750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.06681 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.56133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.73750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.06681 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.56133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.73750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.06681 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.56133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.73750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.06681 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 58.56133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.13362 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 117.12267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.13362 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 117.12267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.13362 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 117.12267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.13362 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 117.12267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.13362 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 117.12267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.13362 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 117.12267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT OF THIS REMARK 300 PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 107 REMARK 465 GLY A 108 REMARK 465 SER A 109 REMARK 465 SER A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 SER A 117 REMARK 465 SER A 118 REMARK 465 GLY A 119 REMARK 465 LEU A 120 REMARK 465 VAL A 121 REMARK 465 PRO A 122 REMARK 465 ARG A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 SER A 126 REMARK 465 ARG A 127 REMARK 465 ARG A 128 REMARK 465 LYS A 129 REMARK 465 SER A 130 REMARK 465 ASN A 131 REMARK 465 CYS A 132 REMARK 465 VAL A 133 REMARK 465 LYS A 134 REMARK 465 GLU A 135 REMARK 465 VAL A 136 REMARK 465 GLU A 137 REMARK 465 LYS A 138 REMARK 465 LEU A 139 REMARK 465 GLN A 140 REMARK 465 GLU A 141 REMARK 465 LYS A 142 REMARK 465 ARG A 143 REMARK 465 GLU A 144 REMARK 465 LYS A 145 REMARK 465 ARG A 146 REMARK 465 ARG A 147 REMARK 465 LEU A 148 REMARK 465 GLN A 149 REMARK 465 GLN A 150 REMARK 465 GLN A 151 REMARK 465 GLU A 152 REMARK 465 LEU A 153 REMARK 465 ARG A 154 REMARK 465 GLU A 155 REMARK 465 LYS A 156 REMARK 465 ARG A 157 REMARK 465 ALA A 158 REMARK 465 GLN A 159 REMARK 465 ASP A 160 REMARK 465 VAL A 161 REMARK 465 ASP A 162 REMARK 465 ALA A 163 REMARK 465 THR A 164 REMARK 465 ASN A 165 REMARK 465 PRO A 166 REMARK 465 ASN A 167 REMARK 465 TYR A 168 REMARK 465 THR A 187 REMARK 465 THR A 188 REMARK 465 ALA A 189 REMARK 465 ASP A 190 REMARK 465 ASP A 299 REMARK 465 PHE A 300 REMARK 465 SER A 301 REMARK 465 GLY A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 GLN A 305 REMARK 465 ASP A 306 REMARK 465 CYS A 307 REMARK 465 SER A 396 REMARK 465 GLY A 397 REMARK 465 GLN A 398 REMARK 465 THR A 399 REMARK 465 SER A 400 REMARK 465 ALA A 401 REMARK 465 ASN A 402 REMARK 465 ALA A 403 REMARK 465 GLY A 437 REMARK 465 ALA A 438 REMARK 465 ASP A 439 REMARK 465 THR A 440 REMARK 465 SER A 441 REMARK 465 SER A 442 REMARK 465 ALA A 443 REMARK 465 LYS A 524 REMARK 465 GLU A 525 REMARK 465 LEU A 526 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 169 CD OE1 OE2 REMARK 470 MET A 171 SD CE REMARK 470 ARG A 175 NE CZ NH1 NH2 REMARK 470 ASP A 176 OD1 OD2 REMARK 470 ARG A 184 NE CZ NH1 NH2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLN A 212 CG CD OE1 NE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLU A 231 OE1 OE2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LYS A 324 CD CE NZ REMARK 470 LYS A 325 CD CE NZ REMARK 470 LYS A 329 CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 346 CE NZ REMARK 470 LYS A 356 CE NZ REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 365 CD OE1 NE2 REMARK 470 GLN A 366 OE1 NE2 REMARK 470 GLN A 368 CD OE1 NE2 REMARK 470 GLU A 381 OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ARG A 418 NE CZ NH1 NH2 REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 470 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 214 -18.58 62.76 REMARK 500 ASP A 215 150.70 -47.31 REMARK 500 LEU A 238 3.24 90.19 REMARK 500 THR A 266 -77.52 -121.20 REMARK 500 ASN A 352 57.32 -140.89 REMARK 500 ARG A 418 -76.27 -84.81 REMARK 500 ASN A 471 77.21 -167.06 REMARK 500 ASN A 494 67.16 -115.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 224 ASP A 225 -144.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 293 OG1 REMARK 620 2 ADP A 601 O3B 79.9 REMARK 620 3 HOH A1001 O 86.9 87.9 REMARK 620 4 HOH A1016 O 89.7 169.6 91.3 REMARK 620 5 HOH A1024 O 169.5 97.8 103.4 92.5 REMARK 620 6 HOH A1025 O 76.2 85.4 162.6 92.4 93.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 2003 DBREF 2GRY A 126 526 GB 21594340 AAH31828 126 526 SEQADV 2GRY MET A 107 GB 21594340 CLONING ARTIFACT SEQADV 2GRY GLY A 108 GB 21594340 CLONING ARTIFACT SEQADV 2GRY SER A 109 GB 21594340 CLONING ARTIFACT SEQADV 2GRY SER A 110 GB 21594340 CLONING ARTIFACT SEQADV 2GRY HIS A 111 GB 21594340 EXPRESSION TAG SEQADV 2GRY HIS A 112 GB 21594340 EXPRESSION TAG SEQADV 2GRY HIS A 113 GB 21594340 EXPRESSION TAG SEQADV 2GRY HIS A 114 GB 21594340 EXPRESSION TAG SEQADV 2GRY HIS A 115 GB 21594340 EXPRESSION TAG SEQADV 2GRY HIS A 116 GB 21594340 EXPRESSION TAG SEQADV 2GRY SER A 117 GB 21594340 CLONING ARTIFACT SEQADV 2GRY SER A 118 GB 21594340 CLONING ARTIFACT SEQADV 2GRY GLY A 119 GB 21594340 CLONING ARTIFACT SEQADV 2GRY LEU A 120 GB 21594340 CLONING ARTIFACT SEQADV 2GRY VAL A 121 GB 21594340 CLONING ARTIFACT SEQADV 2GRY PRO A 122 GB 21594340 CLONING ARTIFACT SEQADV 2GRY ARG A 123 GB 21594340 CLONING ARTIFACT SEQADV 2GRY GLY A 124 GB 21594340 CLONING ARTIFACT SEQADV 2GRY SER A 125 GB 21594340 CLONING ARTIFACT SEQRES 1 A 420 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 420 LEU VAL PRO ARG GLY SER SER ARG ARG LYS SER ASN CYS SEQRES 3 A 420 VAL LYS GLU VAL GLU LYS LEU GLN GLU LYS ARG GLU LYS SEQRES 4 A 420 ARG ARG LEU GLN GLN GLN GLU LEU ARG GLU LYS ARG ALA SEQRES 5 A 420 GLN ASP VAL ASP ALA THR ASN PRO ASN TYR GLU ILE MET SEQRES 6 A 420 CYS MET ILE ARG ASP PHE ARG GLY SER LEU ASP TYR ARG SEQRES 7 A 420 PRO LEU THR THR ALA ASP PRO ILE ASP GLU HIS ARG ILE SEQRES 8 A 420 CYS VAL CYS VAL ARG LYS ARG PRO LEU ASN LYS LYS GLU SEQRES 9 A 420 THR GLN MET LYS ASP LEU ASP VAL ILE THR ILE PRO SER SEQRES 10 A 420 LYS ASP VAL VAL MET VAL HIS GLU PRO LYS GLN LYS VAL SEQRES 11 A 420 ASP LEU THR ARG TYR LEU GLU ASN GLN THR PHE ARG PHE SEQRES 12 A 420 ASP TYR ALA PHE ASP ASP SER ALA PRO ASN GLU MET VAL SEQRES 13 A 420 TYR ARG PHE THR ALA ARG PRO LEU VAL GLU THR ILE PHE SEQRES 14 A 420 GLU ARG GLY MET ALA THR CYS PHE ALA TYR GLY GLN THR SEQRES 15 A 420 GLY SER GLY LYS THR HIS THR MET GLY GLY ASP PHE SER SEQRES 16 A 420 GLY LYS ASN GLN ASP CYS SER LYS GLY ILE TYR ALA LEU SEQRES 17 A 420 ALA ALA ARG ASP VAL PHE LEU MET LEU LYS LYS PRO ASN SEQRES 18 A 420 TYR LYS LYS LEU GLU LEU GLN VAL TYR ALA THR PHE PHE SEQRES 19 A 420 GLU ILE TYR SER GLY LYS VAL PHE ASP LEU LEU ASN ARG SEQRES 20 A 420 LYS THR LYS LEU ARG VAL LEU GLU ASP GLY LYS GLN GLN SEQRES 21 A 420 VAL GLN VAL VAL GLY LEU GLN GLU ARG GLU VAL LYS CYS SEQRES 22 A 420 VAL GLU ASP VAL LEU LYS LEU ILE ASP ILE GLY ASN SER SEQRES 23 A 420 CYS ARG THR SER GLY GLN THR SER ALA ASN ALA HIS SER SEQRES 24 A 420 SER ARG SER HIS ALA VAL PHE GLN ILE ILE LEU ARG ARG SEQRES 25 A 420 LYS GLY LYS LEU HIS GLY LYS PHE SER LEU ILE ASP LEU SEQRES 26 A 420 ALA GLY ASN GLU ARG GLY ALA ASP THR SER SER ALA ASP SEQRES 27 A 420 ARG GLN THR ARG LEU GLU GLY ALA GLU ILE ASN LYS SER SEQRES 28 A 420 LEU LEU ALA LEU LYS GLU CYS ILE ARG ALA LEU GLY ARG SEQRES 29 A 420 ASN LYS PRO HIS THR PRO PHE ARG ALA SER LYS LEU THR SEQRES 30 A 420 GLN VAL LEU ARG ASP SER PHE ILE GLY GLU ASN SER ARG SEQRES 31 A 420 THR CYS MET ILE ALA THR ILE SER PRO GLY MET ALA SER SEQRES 32 A 420 CYS GLU ASN THR LEU ASN THR LEU ARG TYR ALA ASN ARG SEQRES 33 A 420 VAL LYS GLU LEU HET MG A 701 1 HET ADP A 601 27 HET UNX A2001 1 HET UNX A2002 1 HET UNX A2003 1 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 UNX 3(X) FORMUL 7 HOH *25(H2 O) HELIX 1 1 GLU A 169 GLY A 179 1 11 HELIX 2 2 ASN A 207 MET A 213 1 7 HELIX 3 3 PRO A 258 THR A 266 1 9 HELIX 4 4 ALA A 267 GLU A 276 1 10 HELIX 5 5 GLY A 291 GLY A 297 1 7 HELIX 6 6 GLY A 310 LEU A 323 1 14 HELIX 7 7 LYS A 325 LYS A 330 1 6 HELIX 8 8 CYS A 379 THR A 395 1 17 HELIX 9 9 ASP A 444 ASN A 471 1 28 HELIX 10 10 LYS A 472 THR A 475 5 4 HELIX 11 11 PRO A 476 ALA A 479 5 4 HELIX 12 12 SER A 480 LEU A 486 1 7 HELIX 13 13 LEU A 486 GLY A 492 1 7 HELIX 14 14 GLY A 506 ALA A 508 5 3 HELIX 15 15 SER A 509 ARG A 522 1 14 SHEET 1 A10 TYR A 251 PHE A 253 0 SHEET 2 A10 ILE A 197 LYS A 203 1 N VAL A 201 O PHE A 253 SHEET 3 A10 SER A 495 ILE A 503 1 O ALA A 501 N CYS A 200 SHEET 4 A10 MET A 279 GLY A 286 1 N PHE A 283 O CYS A 498 SHEET 5 A10 LEU A 422 ASP A 430 1 O ILE A 429 N CYS A 282 SHEET 6 A10 HIS A 409 ARG A 417 -1 N PHE A 412 O LEU A 428 SHEET 7 A10 GLN A 334 TYR A 343 -1 N PHE A 340 O VAL A 411 SHEET 8 A10 LYS A 346 ASP A 349 -1 O PHE A 348 N GLU A 341 SHEET 9 A10 LYS A 356 LEU A 360 -1 O LEU A 357 N VAL A 347 SHEET 10 A10 GLN A 368 VAL A 370 -1 O GLN A 368 N LEU A 360 SHEET 1 B 8 TYR A 251 PHE A 253 0 SHEET 2 B 8 ILE A 197 LYS A 203 1 N VAL A 201 O PHE A 253 SHEET 3 B 8 SER A 495 ILE A 503 1 O ALA A 501 N CYS A 200 SHEET 4 B 8 MET A 279 GLY A 286 1 N PHE A 283 O CYS A 498 SHEET 5 B 8 LEU A 422 ASP A 430 1 O ILE A 429 N CYS A 282 SHEET 6 B 8 HIS A 409 ARG A 417 -1 N PHE A 412 O LEU A 428 SHEET 7 B 8 GLN A 334 TYR A 343 -1 N PHE A 340 O VAL A 411 SHEET 8 B 8 ARG A 375 GLU A 376 -1 O ARG A 375 N ALA A 337 SHEET 1 C 3 ILE A 219 THR A 220 0 SHEET 2 C 3 VAL A 226 GLN A 234 -1 O MET A 228 N THR A 220 SHEET 3 C 3 ARG A 240 ARG A 248 -1 O GLN A 245 N VAL A 229 LINK OG1 THR A 293 MG MG A 701 1555 1555 2.25 LINK O3B ADP A 601 MG MG A 701 1555 1555 2.23 LINK MG MG A 701 O HOH A1001 1555 1555 2.26 LINK MG MG A 701 O HOH A1016 1555 1555 2.15 LINK MG MG A 701 O HOH A1024 1555 1555 2.08 LINK MG MG A 701 O HOH A1025 1555 1555 2.01 SITE 1 AC1 6 THR A 293 ADP A 601 HOH A1001 HOH A1016 SITE 2 AC1 6 HOH A1024 HOH A1025 SITE 1 AC2 15 ARG A 202 ARG A 204 PRO A 205 GLN A 287 SITE 2 AC2 15 THR A 288 GLY A 289 SER A 290 GLY A 291 SITE 3 AC2 15 LYS A 292 THR A 293 HIS A 294 MG A 701 SITE 4 AC2 15 HOH A1014 HOH A1024 HOH A1025 SITE 1 AC3 3 ILE A 342 SER A 344 GLY A 345 SITE 1 AC4 4 GLY A 286 GLN A 287 THR A 502 THR A 516 SITE 1 AC5 4 HIS A 195 ARG A 196 LEU A 270 THR A 497 CRYST1 121.475 121.475 175.684 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008232 0.004753 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005692 0.00000