HEADER LYASE 25-APR-06 2GS8 TITLE STRUCTURE OF MEVALONATE PYROPHOSPHATE DECARBOXYLASE FROM STREPTOCOCCUS TITLE 2 PYOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEVALONATE PYROPHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES M1 GAS; SOURCE 3 ORGANISM_TAXID: 160490; SOURCE 4 STRAIN: SF370; SOURCE 5 GENE: MVAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MEVALONATE PYROPHOSPHATE DECARBOXYLASE, STREPTOCOCCUS PYOGENES, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,H.LI,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2GS8 1 VERSN REVDAT 2 24-FEB-09 2GS8 1 VERSN REVDAT 1 06-JUN-06 2GS8 0 JRNL AUTH M.E.CUFF,H.LI,S.CLANCY,A.JOACHIMIAK JRNL TITL STRUCTURE OF MEVALONATE PYROPHOSPHATE DECARBOXYLASE FROM JRNL TITL 2 STREPTOCOCCUS PYOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3142 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.446 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2757 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3732 ; 1.484 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 5.883 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;40.640 ;25.726 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;12.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.280 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2072 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1474 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1975 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 409 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.309 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 70 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1768 ; 1.099 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2809 ; 1.477 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 2.822 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 920 ; 4.184 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9060 -3.3023 2.5951 REMARK 3 T TENSOR REMARK 3 T11: -0.0426 T22: -0.0787 REMARK 3 T33: -0.0801 T12: 0.0064 REMARK 3 T13: 0.0104 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.6111 L22: 0.8118 REMARK 3 L33: 1.0646 L12: -0.2088 REMARK 3 L13: -0.5052 L23: 0.2066 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0202 S13: -0.0692 REMARK 3 S21: -0.0904 S22: -0.0311 S23: -0.0559 REMARK 3 S31: 0.1861 S32: 0.0453 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5935 12.3821 20.4325 REMARK 3 T TENSOR REMARK 3 T11: -0.0682 T22: -0.0527 REMARK 3 T33: -0.0524 T12: 0.0035 REMARK 3 T13: -0.0030 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.0135 L22: 0.6348 REMARK 3 L33: 0.6281 L12: 0.2812 REMARK 3 L13: 0.0488 L23: 0.0945 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0612 S13: 0.0628 REMARK 3 S21: 0.0287 S22: -0.0449 S23: -0.0531 REMARK 3 S31: 0.0482 S32: 0.0803 S33: 0.0208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908, 0.97919 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 33.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELX, CCP4, MLPHARE, DM, SOLVE/RESOLVE, REMARK 200 O, ARP/WARP, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE, 25% REMARK 280 PEG 3350, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.49700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.99550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.03250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.99550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.49700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.03250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT FOR THE REMARK 300 PROTEIN IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 687 O HOH A 1068 1.89 REMARK 500 O HOH A 700 O HOH A 994 2.00 REMARK 500 CE LYS A 155 O HOH A 766 2.01 REMARK 500 O HOH A 799 O HOH A 1091 2.05 REMARK 500 O HOH A 855 O HOH A 1013 2.09 REMARK 500 O HOH A 761 O HOH A 1064 2.17 REMARK 500 CE LYS A 155 O HOH A 1030 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 302 O HOH A 995 1655 1.49 REMARK 500 O HOH A 779 O HOH A 1091 2555 2.06 REMARK 500 O LYS A 181 NH1 ARG A 296 3645 2.06 REMARK 500 CZ ARG A 302 O HOH A 995 1655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 139 10.39 -148.76 REMARK 500 ILE A 183 149.47 -39.47 REMARK 500 ASP A 276 -148.37 -114.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 177 16.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 835 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A 836 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 890 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 953 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 6.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC29850 RELATED DB: TARGETDB DBREF 2GS8 A 1 314 GB 13622042 AAK33797 1 314 SEQADV 2GS8 SER A -2 GB 13622042 CLONING ARTIFACT SEQADV 2GS8 ASN A -1 GB 13622042 CLONING ARTIFACT SEQADV 2GS8 ALA A 0 GB 13622042 CLONING ARTIFACT SEQADV 2GS8 MSE A 1 GB 13622042 MET 1 MODIFIED RESIDUE SEQADV 2GS8 MSE A 28 GB 13622042 MET 28 MODIFIED RESIDUE SEQADV 2GS8 MSE A 42 GB 13622042 MET 42 MODIFIED RESIDUE SEQADV 2GS8 MSE A 92 GB 13622042 MET 92 MODIFIED RESIDUE SEQADV 2GS8 MSE A 98 GB 13622042 MET 98 MODIFIED RESIDUE SEQADV 2GS8 MSE A 169 GB 13622042 MET 169 MODIFIED RESIDUE SEQADV 2GS8 MSE A 171 GB 13622042 MET 171 MODIFIED RESIDUE SEQADV 2GS8 MSE A 173 GB 13622042 MET 173 MODIFIED RESIDUE SEQADV 2GS8 MSE A 189 GB 13622042 MET 189 MODIFIED RESIDUE SEQADV 2GS8 MSE A 213 GB 13622042 MET 213 MODIFIED RESIDUE SEQADV 2GS8 MSE A 236 GB 13622042 MET 236 MODIFIED RESIDUE SEQADV 2GS8 MSE A 258 GB 13622042 MET 258 MODIFIED RESIDUE SEQADV 2GS8 MSE A 275 GB 13622042 MET 275 MODIFIED RESIDUE SEQRES 1 A 317 SER ASN ALA MSE ASP PRO ASN VAL ILE THR VAL THR SER SEQRES 2 A 317 TYR ALA ASN ILE ALA ILE ILE LYS TYR TRP GLY LYS GLU SEQRES 3 A 317 ASN GLN ALA LYS MSE ILE PRO SER THR SER SER ILE SER SEQRES 4 A 317 LEU THR LEU GLU ASN MSE PHE THR THR THR SER VAL SER SEQRES 5 A 317 PHE LEU PRO ASP THR ALA THR SER ASP GLN PHE TYR ILE SEQRES 6 A 317 ASN GLY ILE LEU GLN ASN ASP GLU GLU HIS THR LYS ILE SEQRES 7 A 317 SER ALA ILE ILE ASP GLN PHE ARG GLN PRO GLY GLN ALA SEQRES 8 A 317 PHE VAL LYS MSE GLU THR GLN ASN ASN MSE PRO THR ALA SEQRES 9 A 317 ALA GLY LEU SER SER SER SER SER GLY LEU SER ALA LEU SEQRES 10 A 317 VAL LYS ALA CYS ASP GLN LEU PHE ASP THR GLN LEU ASP SEQRES 11 A 317 GLN LYS ALA LEU ALA GLN LYS ALA LYS PHE ALA SER GLY SEQRES 12 A 317 SER SER SER ARG SER PHE PHE GLY PRO VAL ALA ALA TRP SEQRES 13 A 317 ASP LYS ASP SER GLY ALA ILE TYR LYS VAL GLU THR ASP SEQRES 14 A 317 LEU LYS MSE ALA MSE ILE MSE LEU VAL LEU ASN ALA ALA SEQRES 15 A 317 LYS LYS PRO ILE SER SER ARG GLU GLY MSE LYS LEU CYS SEQRES 16 A 317 ARG ASP THR SER THR THR PHE ASP GLN TRP VAL GLU GLN SEQRES 17 A 317 SER ALA ILE ASP TYR GLN HIS MSE LEU THR TYR LEU LYS SEQRES 18 A 317 THR ASN ASN PHE GLU LYS VAL GLY GLN LEU THR GLU ALA SEQRES 19 A 317 ASN ALA LEU ALA MSE HIS ALA THR THR LYS THR ALA ASN SEQRES 20 A 317 PRO PRO PHE SER TYR LEU THR LYS GLU SER TYR GLN ALA SEQRES 21 A 317 MSE GLU ALA VAL LYS GLU LEU ARG GLN GLU GLY PHE ALA SEQRES 22 A 317 CYS TYR PHE THR MSE ASP ALA GLY PRO ASN VAL LYS VAL SEQRES 23 A 317 LEU CYS LEU GLU LYS ASP LEU ALA GLN LEU ALA GLU ARG SEQRES 24 A 317 LEU GLY LYS ASN TYR ARG ILE ILE VAL SER LYS THR LYS SEQRES 25 A 317 ASP LEU PRO ASP VAL MODRES 2GS8 MSE A 1 MET SELENOMETHIONINE MODRES 2GS8 MSE A 28 MET SELENOMETHIONINE MODRES 2GS8 MSE A 42 MET SELENOMETHIONINE MODRES 2GS8 MSE A 92 MET SELENOMETHIONINE MODRES 2GS8 MSE A 98 MET SELENOMETHIONINE MODRES 2GS8 MSE A 169 MET SELENOMETHIONINE MODRES 2GS8 MSE A 171 MET SELENOMETHIONINE MODRES 2GS8 MSE A 173 MET SELENOMETHIONINE MODRES 2GS8 MSE A 189 MET SELENOMETHIONINE MODRES 2GS8 MSE A 213 MET SELENOMETHIONINE MODRES 2GS8 MSE A 236 MET SELENOMETHIONINE MODRES 2GS8 MSE A 258 MET SELENOMETHIONINE MODRES 2GS8 MSE A 275 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 28 16 HET MSE A 42 8 HET MSE A 92 8 HET MSE A 98 8 HET MSE A 169 8 HET MSE A 171 16 HET MSE A 173 8 HET MSE A 189 8 HET MSE A 213 8 HET MSE A 236 8 HET MSE A 258 16 HET MSE A 275 8 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET ACY A 601 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACY ACETIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 EDO 9(C2 H6 O2) FORMUL 11 ACY C2 H4 O2 FORMUL 12 HOH *494(H2 O) HELIX 1 1 ASN A 68 ASP A 80 1 13 HELIX 2 2 PRO A 99 GLY A 103 5 5 HELIX 3 3 SER A 105 PHE A 122 1 18 HELIX 4 4 ASP A 127 GLY A 140 1 14 HELIX 5 5 SER A 141 PHE A 147 5 7 HELIX 6 6 SER A 184 SER A 196 1 13 HELIX 7 7 THR A 198 THR A 219 1 22 HELIX 8 8 ASN A 221 LYS A 241 1 21 HELIX 9 9 THR A 251 GLU A 267 1 17 HELIX 10 10 ASP A 289 LYS A 299 1 11 SHEET 1 A 5 VAL A 5 ILE A 17 0 SHEET 2 A 5 SER A 34 PHE A 50 -1 O MSE A 42 N ALA A 12 SHEET 3 A 5 VAL A 90 GLN A 95 -1 O LYS A 91 N SER A 49 SHEET 4 A 5 GLN A 59 ILE A 62 1 N TYR A 61 O THR A 94 SHEET 5 A 5 ILE A 65 LEU A 66 -1 O ILE A 65 N ILE A 62 SHEET 1 B 4 VAL A 5 ILE A 17 0 SHEET 2 B 4 SER A 34 PHE A 50 -1 O MSE A 42 N ALA A 12 SHEET 3 B 4 VAL A 150 TRP A 153 -1 O ALA A 151 N SER A 36 SHEET 4 B 4 ILE A 160 LYS A 162 -1 O TYR A 161 N ALA A 152 SHEET 1 C 2 LYS A 22 ASN A 24 0 SHEET 2 C 2 ILE A 29 PRO A 30 -1 O ILE A 29 N ASN A 24 SHEET 1 D 4 CYS A 271 THR A 274 0 SHEET 2 D 4 VAL A 281 LEU A 286 -1 O LYS A 282 N THR A 274 SHEET 3 D 4 MSE A 169 VAL A 175 -1 N LEU A 174 O VAL A 281 SHEET 4 D 4 ARG A 302 LYS A 307 -1 O ILE A 304 N MSE A 173 LINK C ALA A 0 N MSE A 1 1555 1555 1.31 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C LYS A 27 N AMSE A 28 1555 1555 1.34 LINK C LYS A 27 N BMSE A 28 1555 1555 1.34 LINK C AMSE A 28 N ILE A 29 1555 1555 1.33 LINK C BMSE A 28 N ILE A 29 1555 1555 1.33 LINK C AASN A 41 N MSE A 42 1555 1555 1.33 LINK C BASN A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N PHE A 43 1555 1555 1.33 LINK C LYS A 91 N MSE A 92 1555 1555 1.32 LINK C MSE A 92 N GLU A 93 1555 1555 1.33 LINK C ASN A 97 N MSE A 98 1555 1555 1.34 LINK C MSE A 98 N PRO A 99 1555 1555 1.34 LINK C LYS A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N ALA A 170 1555 1555 1.33 LINK C ALA A 170 N AMSE A 171 1555 1555 1.34 LINK C ALA A 170 N BMSE A 171 1555 1555 1.33 LINK C BMSE A 171 N ILE A 172 1555 1555 1.33 LINK C AMSE A 171 N ILE A 172 1555 1555 1.33 LINK C ILE A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N LEU A 174 1555 1555 1.34 LINK C GLY A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N LYS A 190 1555 1555 1.34 LINK C HIS A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N LEU A 214 1555 1555 1.33 LINK C ALA A 235 N MSE A 236 1555 1555 1.34 LINK C MSE A 236 N HIS A 237 1555 1555 1.33 LINK C ALA A 257 N BMSE A 258 1555 1555 1.33 LINK C ALA A 257 N AMSE A 258 1555 1555 1.34 LINK C BMSE A 258 N BGLU A 259 1555 1555 1.33 LINK C AMSE A 258 N AGLU A 259 1555 1555 1.33 LINK C THR A 274 N MSE A 275 1555 1555 1.34 LINK C MSE A 275 N ASP A 276 1555 1555 1.32 CISPEP 1 GLY A 148 PRO A 149 0 8.80 CISPEP 2 ASN A 244 PRO A 245 0 1.39 SITE 1 AC1 7 PHE A 50 GLN A 87 ALA A 88 HOH A 757 SITE 2 AC1 7 HOH A 911 HOH A 990 HOH A1053 SITE 1 AC2 10 VAL A 8 THR A 9 SER A 10 ALA A 113 SITE 2 AC2 10 LYS A 116 SER A 145 PHE A 146 HOH A 612 SITE 3 AC2 10 HOH A 634 HOH A 690 SITE 1 AC3 8 GLN A 120 GLN A 125 PRO A 246 PHE A 247 SITE 2 AC3 8 HOH A 621 HOH A 651 HOH A 804 HOH A 968 SITE 1 AC4 7 GLN A 59 TYR A 61 SER A 76 ALA A 77 SITE 2 AC4 7 ASP A 80 HOH A 723 HOH A 857 SITE 1 AC5 7 ILE A 14 LEU A 104 MSE A 173 LYS A 282 SITE 2 AC5 7 HOH A 639 HOH A 645 HOH A 900 SITE 1 AC6 7 GLN A 87 MSE A 258 GLU A 259 LYS A 262 SITE 2 AC6 7 EDO A 507 HOH A 684 HOH A1069 SITE 1 AC7 7 GLN A 87 LYS A 241 TYR A 255 EDO A 506 SITE 2 AC7 7 EDO A 508 HOH A 657 HOH A 708 SITE 1 AC8 5 GLN A 87 PHE A 122 TYR A 255 EDO A 507 SITE 2 AC8 5 HOH A 847 SITE 1 AC9 6 TYR A 19 SER A 141 SER A 185 HOH A 638 SITE 2 AC9 6 HOH A 672 HOH A 785 SITE 1 BC1 3 THR A 9 THR A 45 ASP A 166 CRYST1 38.994 72.065 99.991 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025645 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010001 0.00000