data_2GSB # _entry.id 2GSB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GSB pdb_00002gsb 10.2210/pdb2gsb/pdb RCSB RCSB037492 ? ? WWPDB D_1000037492 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GSB _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kurosaki, C.' 1 'Suetake, T.' 2 'Yoshida, M.' 3 'Hayashi, F.' 4 'Yokoyma, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the second SH2 domain of human Ras GTPase-activating protein 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kurosaki, C.' 1 ? primary 'Suetake, T.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Hayashi, F.' 4 ? primary 'Yokoyma, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Ras GTPase-activating protein 1' _entity.formula_weight 13534.019 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH2 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GTPase-activating protein, GAP, Ras p21 protein activator, p120GAP, RasGAP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGG RYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGG RYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 GLU n 1 10 GLU n 1 11 ASP n 1 12 PRO n 1 13 HIS n 1 14 GLU n 1 15 GLY n 1 16 LYS n 1 17 ILE n 1 18 TRP n 1 19 PHE n 1 20 HIS n 1 21 GLY n 1 22 LYS n 1 23 ILE n 1 24 SER n 1 25 LYS n 1 26 GLN n 1 27 GLU n 1 28 ALA n 1 29 TYR n 1 30 ASN n 1 31 LEU n 1 32 LEU n 1 33 MET n 1 34 THR n 1 35 VAL n 1 36 GLY n 1 37 GLN n 1 38 VAL n 1 39 CYS n 1 40 SER n 1 41 PHE n 1 42 LEU n 1 43 VAL n 1 44 ARG n 1 45 PRO n 1 46 SER n 1 47 ASP n 1 48 ASN n 1 49 THR n 1 50 PRO n 1 51 GLY n 1 52 ASP n 1 53 TYR n 1 54 SER n 1 55 LEU n 1 56 TYR n 1 57 PHE n 1 58 ARG n 1 59 THR n 1 60 ASN n 1 61 GLU n 1 62 ASN n 1 63 ILE n 1 64 GLN n 1 65 ARG n 1 66 PHE n 1 67 LYS n 1 68 ILE n 1 69 CYS n 1 70 PRO n 1 71 THR n 1 72 PRO n 1 73 ASN n 1 74 ASN n 1 75 GLN n 1 76 PHE n 1 77 MET n 1 78 MET n 1 79 GLY n 1 80 GLY n 1 81 ARG n 1 82 TYR n 1 83 TYR n 1 84 ASN n 1 85 SER n 1 86 ILE n 1 87 GLY n 1 88 ASP n 1 89 ILE n 1 90 ILE n 1 91 ASP n 1 92 HIS n 1 93 TYR n 1 94 ARG n 1 95 LYS n 1 96 GLU n 1 97 GLN n 1 98 ILE n 1 99 VAL n 1 100 GLU n 1 101 GLY n 1 102 TYR n 1 103 TYR n 1 104 LEU n 1 105 LYS n 1 106 GLU n 1 107 PRO n 1 108 VAL n 1 109 PRO n 1 110 MET n 1 111 GLN n 1 112 ASP n 1 113 GLN n 1 114 SER n 1 115 GLY n 1 116 PRO n 1 117 SER n 1 118 SER n 1 119 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'RASA1, RASA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050711-17 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASA1_HUMAN _struct_ref.pdbx_db_accession P20936 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;REEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIG DIIDHYRKEQIVEGYYLKEPVPMQDQ ; _struct_ref.pdbx_align_begin 341 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GSB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20936 _struct_ref_seq.db_align_beg 341 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 446 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 113 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GSB GLY A 1 ? UNP P20936 ? ? 'cloning artifact' 1 1 1 2GSB SER A 2 ? UNP P20936 ? ? 'cloning artifact' 2 2 1 2GSB SER A 3 ? UNP P20936 ? ? 'cloning artifact' 3 3 1 2GSB GLY A 4 ? UNP P20936 ? ? 'cloning artifact' 4 4 1 2GSB SER A 5 ? UNP P20936 ? ? 'cloning artifact' 5 5 1 2GSB SER A 6 ? UNP P20936 ? ? 'cloning artifact' 6 6 1 2GSB GLY A 7 ? UNP P20936 ? ? 'cloning artifact' 7 7 1 2GSB SER A 114 ? UNP P20936 ? ? 'cloning artifact' 114 8 1 2GSB GLY A 115 ? UNP P20936 ? ? 'cloning artifact' 115 9 1 2GSB PRO A 116 ? UNP P20936 ? ? 'cloning artifact' 116 10 1 2GSB SER A 117 ? UNP P20936 ? ? 'cloning artifact' 117 11 1 2GSB SER A 118 ? UNP P20936 ? ? 'cloning artifact' 118 12 1 2GSB GLY A 119 ? UNP P20936 ? ? 'cloning artifact' 119 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '120 mM' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.27mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3, 10% D2O; 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O; 90% H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2GSB _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2GSB _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2GSB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1c Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.934 'KOBAYASHI, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2GSB _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2GSB _struct.title 'Solution structure of the second SH2 domain of human Ras GTPase-activating protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GSB _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;GTPase-activating protein, GAP, Ras p21 protein activator, p120GAP, RasGAP, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? LYS A 16 ? PRO A 12 LYS A 16 5 ? 5 HELX_P HELX_P2 2 SER A 24 ? THR A 34 ? SER A 24 THR A 34 1 ? 11 HELX_P HELX_P3 3 SER A 85 ? ARG A 94 ? SER A 85 ARG A 94 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 40 ? PRO A 45 ? SER A 40 PRO A 45 A 2 TYR A 53 ? ARG A 58 ? TYR A 53 ARG A 58 B 1 ILE A 68 ? THR A 71 ? ILE A 68 THR A 71 B 2 GLN A 75 ? MET A 78 ? GLN A 75 MET A 78 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 42 ? N LEU A 42 O TYR A 56 ? O TYR A 56 B 1 2 N THR A 71 ? N THR A 71 O GLN A 75 ? O GLN A 75 # _database_PDB_matrix.entry_id 2GSB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GSB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 MET 77 77 77 MET MET A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLY 119 119 119 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-01 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? -170.88 148.95 2 1 THR A 34 ? ? -105.88 -69.74 3 1 VAL A 38 ? ? -38.49 140.12 4 1 PRO A 50 ? ? -69.81 91.35 5 1 PRO A 72 ? ? -69.79 1.44 6 1 SER A 114 ? ? -34.51 120.03 7 1 SER A 117 ? ? -50.37 100.89 8 2 SER A 5 ? ? -38.25 133.55 9 2 ARG A 8 ? ? -52.61 99.33 10 2 ILE A 23 ? ? -57.72 177.31 11 2 PRO A 50 ? ? -69.81 89.57 12 2 PRO A 72 ? ? -69.74 2.10 13 2 ASN A 73 ? ? -105.02 41.28 14 2 MET A 78 ? ? -95.77 -64.65 15 2 ARG A 94 ? ? -39.67 -35.77 16 2 GLN A 111 ? ? -112.74 64.55 17 2 PRO A 116 ? ? -69.79 -165.92 18 3 SER A 2 ? ? 38.27 42.10 19 3 SER A 5 ? ? -49.83 163.30 20 3 SER A 6 ? ? -107.93 42.05 21 3 ALA A 28 ? ? -34.94 -35.62 22 3 THR A 34 ? ? -99.22 -72.69 23 3 VAL A 38 ? ? -34.65 142.49 24 3 SER A 46 ? ? -57.14 102.52 25 3 PRO A 50 ? ? -69.80 92.13 26 3 ASP A 112 ? ? -44.03 109.34 27 4 SER A 5 ? ? -131.31 -51.03 28 4 ILE A 23 ? ? -62.18 -178.96 29 4 THR A 34 ? ? -113.55 -74.30 30 4 ASP A 47 ? ? -94.46 -61.76 31 4 PRO A 50 ? ? -69.78 4.99 32 4 MET A 78 ? ? -115.30 68.51 33 4 GLU A 100 ? ? -81.40 39.95 34 4 PRO A 107 ? ? -69.70 -177.28 35 4 ASP A 112 ? ? -37.14 129.23 36 4 GLN A 113 ? ? -50.73 99.30 37 4 SER A 118 ? ? -58.40 100.57 38 5 ARG A 8 ? ? -37.11 120.43 39 5 ILE A 23 ? ? -55.24 -175.44 40 5 THR A 34 ? ? -118.74 -74.68 41 5 LEU A 42 ? ? -173.58 144.50 42 5 SER A 46 ? ? -44.88 102.70 43 5 GLU A 61 ? ? -80.12 -75.07 44 5 PRO A 72 ? ? -69.74 0.03 45 5 GLN A 97 ? ? -48.48 100.06 46 5 LYS A 105 ? ? -103.96 -68.38 47 6 SER A 5 ? ? -40.14 160.29 48 6 THR A 34 ? ? -128.45 -72.75 49 6 SER A 46 ? ? -57.70 -175.92 50 6 ASP A 47 ? ? -123.10 -75.20 51 6 THR A 49 ? ? -34.47 151.87 52 6 PRO A 50 ? ? -69.76 79.69 53 6 PRO A 72 ? ? -69.74 2.09 54 6 MET A 78 ? ? -108.72 -60.01 55 6 ILE A 89 ? ? -37.06 -36.82 56 6 GLU A 100 ? ? -82.65 38.19 57 6 GLN A 113 ? ? -78.15 49.55 58 7 ILE A 23 ? ? -68.68 -178.95 59 7 THR A 34 ? ? -112.11 -74.58 60 7 ASN A 48 ? ? 34.01 48.72 61 7 PRO A 50 ? ? -69.70 7.61 62 7 ASP A 52 ? ? -45.45 162.31 63 7 MET A 78 ? ? -120.86 -56.62 64 7 GLN A 97 ? ? -52.93 94.07 65 7 SER A 117 ? ? -49.25 103.90 66 8 THR A 34 ? ? -119.30 -74.48 67 8 SER A 46 ? ? -58.21 173.61 68 8 GLU A 61 ? ? -72.03 -74.38 69 8 ASN A 73 ? ? -89.09 37.40 70 8 ASP A 91 ? ? -37.04 -32.05 71 8 GLU A 100 ? ? -82.17 39.03 72 8 LYS A 105 ? ? -81.14 -73.58 73 8 ASP A 112 ? ? -48.53 160.34 74 8 SER A 118 ? ? -47.63 169.12 75 9 ILE A 23 ? ? -51.25 -176.00 76 9 THR A 34 ? ? -112.65 -74.02 77 9 ASN A 48 ? ? -35.58 -74.99 78 9 PRO A 50 ? ? -69.74 93.27 79 9 GLU A 100 ? ? -83.40 36.30 80 9 LYS A 105 ? ? -73.15 -72.63 81 10 SER A 5 ? ? -170.34 118.56 82 10 ILE A 23 ? ? -68.25 -175.04 83 10 THR A 34 ? ? -111.03 -75.04 84 10 ASN A 48 ? ? 45.42 27.68 85 10 ILE A 89 ? ? -37.05 -36.23 86 10 GLU A 100 ? ? -81.99 39.10 87 10 LYS A 105 ? ? -74.19 -71.68 88 10 ASP A 112 ? ? -39.00 133.30 89 10 GLN A 113 ? ? -107.00 -67.41 90 11 SER A 3 ? ? -66.14 86.62 91 11 ARG A 8 ? ? 33.81 47.51 92 11 GLU A 14 ? ? -81.87 42.95 93 11 LEU A 32 ? ? -49.41 -18.55 94 11 THR A 34 ? ? -103.70 -74.01 95 11 SER A 46 ? ? -58.64 170.50 96 11 ASN A 60 ? ? -33.79 -34.29 97 11 GLU A 61 ? ? -82.21 -74.63 98 11 ASN A 73 ? ? -105.43 50.09 99 11 ASN A 74 ? ? 37.09 51.52 100 11 ILE A 89 ? ? -37.07 -31.05 101 11 GLU A 100 ? ? -35.26 -31.82 102 11 GLN A 113 ? ? 35.57 46.26 103 11 SER A 114 ? ? -39.33 -36.75 104 11 SER A 117 ? ? -43.68 101.75 105 12 ARG A 8 ? ? -34.79 107.22 106 12 ILE A 23 ? ? -66.27 -175.11 107 12 THR A 34 ? ? -115.44 -75.00 108 12 GLU A 61 ? ? -67.14 -72.14 109 12 ILE A 89 ? ? -34.67 -32.42 110 12 GLN A 97 ? ? -44.20 108.38 111 12 GLU A 100 ? ? -80.72 40.47 112 12 LYS A 105 ? ? -68.79 -74.16 113 12 PRO A 107 ? ? -69.69 -179.95 114 12 SER A 114 ? ? -119.39 79.59 115 12 SER A 117 ? ? -39.90 101.28 116 12 SER A 118 ? ? -40.75 108.03 117 13 LYS A 16 ? ? -36.68 135.61 118 13 ILE A 23 ? ? -61.80 -176.64 119 13 THR A 34 ? ? -106.04 -75.06 120 13 LEU A 42 ? ? -172.51 142.75 121 13 SER A 46 ? ? -37.66 137.14 122 13 ASN A 48 ? ? -71.74 -72.22 123 13 PRO A 50 ? ? -69.81 4.72 124 13 ARG A 65 ? ? -166.29 114.39 125 13 PRO A 72 ? ? -69.67 0.77 126 13 ASN A 74 ? ? 38.96 48.62 127 13 GLU A 100 ? ? -35.08 -36.69 128 13 ASP A 112 ? ? -89.87 39.04 129 14 ILE A 23 ? ? -58.95 176.37 130 14 ASN A 62 ? ? -172.37 -179.85 131 14 GLN A 97 ? ? -34.65 117.78 132 14 LYS A 105 ? ? -77.65 -71.16 133 14 MET A 110 ? ? -52.51 176.64 134 14 GLN A 111 ? ? -112.13 73.30 135 14 ASP A 112 ? ? -69.91 96.58 136 14 SER A 117 ? ? -36.67 130.97 137 15 GLU A 14 ? ? -88.38 33.38 138 15 SER A 46 ? ? -49.42 172.85 139 15 PRO A 50 ? ? -69.79 88.80 140 15 GLU A 61 ? ? -100.00 -75.03 141 15 ASN A 73 ? ? -102.00 43.95 142 15 ASN A 74 ? ? 37.75 40.99 143 15 GLU A 100 ? ? -37.26 -32.50 144 15 SER A 114 ? ? -106.32 71.32 145 16 SER A 5 ? ? 34.34 48.99 146 16 LYS A 16 ? ? -48.63 155.52 147 16 ILE A 23 ? ? -66.51 -175.99 148 16 THR A 34 ? ? -112.12 -73.89 149 16 GLU A 61 ? ? -76.80 -72.88 150 16 ASN A 73 ? ? -96.36 38.80 151 16 GLU A 100 ? ? -36.42 -32.82 152 16 LYS A 105 ? ? -77.68 -70.92 153 16 GLN A 111 ? ? -114.89 69.84 154 16 SER A 117 ? ? -39.69 96.41 155 17 LYS A 16 ? ? -39.83 139.72 156 17 THR A 34 ? ? -104.11 -70.96 157 17 ASN A 73 ? ? -87.46 42.40 158 17 ASN A 74 ? ? 38.07 53.53 159 17 MET A 78 ? ? -105.19 72.77 160 17 ILE A 89 ? ? -39.79 -30.16 161 17 GLN A 97 ? ? -45.81 104.75 162 17 MET A 110 ? ? -50.46 -177.63 163 17 ASP A 112 ? ? -170.59 118.51 164 17 SER A 114 ? ? -39.87 109.57 165 18 ILE A 23 ? ? -64.59 -175.20 166 18 THR A 34 ? ? -104.36 -75.06 167 18 ASN A 48 ? ? 36.19 44.49 168 18 PRO A 50 ? ? -69.74 86.09 169 18 ASN A 62 ? ? -174.19 148.90 170 18 GLN A 97 ? ? -38.74 108.91 171 18 GLU A 100 ? ? -81.21 39.10 172 18 LYS A 105 ? ? -75.53 -72.20 173 19 SER A 5 ? ? -127.16 -50.42 174 19 GLU A 9 ? ? -38.60 141.61 175 19 THR A 34 ? ? -113.02 -74.31 176 19 ASP A 47 ? ? -57.90 103.06 177 19 ASN A 73 ? ? -87.79 46.67 178 19 ASN A 74 ? ? 34.13 54.77 179 19 ASP A 112 ? ? -36.78 109.65 180 20 ILE A 23 ? ? -58.80 -177.63 181 20 THR A 34 ? ? -110.82 -75.03 182 20 GLU A 61 ? ? -80.10 -72.93 183 20 ASN A 73 ? ? -102.48 44.64 184 20 ASN A 74 ? ? 37.04 49.97 185 20 GLU A 100 ? ? -36.74 -39.63 186 20 ASP A 112 ? ? 38.37 43.88 #