HEADER SIGNALING PROTEIN 28-APR-06 2GTJ TITLE REDUCED FORM OF ADAP HSH3-N-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FYN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HSH3-N (REDUCED); COMPND 5 SYNONYM: ADAP, FYN-T-BINDING PROTEIN, FYB-120/130, P120/P130, SLP-76- COMPND 6 ASSOCIATED PHOSPHOPROTEIN, SLAP-130; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYB, SLAP130; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET24D KEYWDS SH3, REDOX, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.ZIMMERMANN,R.KUEHNE,C.FREUND REVDAT 4 09-MAR-22 2GTJ 1 REMARK SEQADV REVDAT 3 24-FEB-09 2GTJ 1 VERSN REVDAT 2 26-JUN-07 2GTJ 1 JRNL REVDAT 1 05-JUN-07 2GTJ 0 JRNL AUTH J.ZIMMERMANN,R.KUHNE,M.SYLVESTER,C.FREUND JRNL TITL REDOX-REGULATED CONFORMATIONAL CHANGES IN AN SH3 DOMAIN JRNL REF BIOCHEMISTRY V. 46 6971 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17511475 JRNL DOI 10.1021/BI700437R REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ZIMMERMANN,C.FREUND REMARK 1 TITL NMR ASSIGNMENT OF THE REDUCED AND OXIDIZED FORMS OF THE REMARK 1 TITL 2 HUMAN ADAP HSH3-1 DOMAIN. REMARK 1 REF J.BIOMOL.NMR V. 32 94 2005 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 16041492 REMARK 1 DOI 10.1007/S10858-005-3984-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ANSIG 3.3, X-PLOR REMARK 3 AUTHORS : PER KRAULIS (ANSIG), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED WITH XPLOR REMARK 3 -NIH, THE FINAL STRUCTURES WERE SUBJECTED TO WATER REFINEMENT REMARK 3 WITH XPLOR-NIH REMARK 4 REMARK 4 2GTJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000037531. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HSH3-N, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM NACL, PH 7.4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, AZARA, X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 GLY A 75 N GLY A 75 CA -0.097 REMARK 500 3 GLY A 75 N GLY A 75 CA -0.099 REMARK 500 5 GLY A 75 N GLY A 75 CA -0.110 REMARK 500 6 GLY A 75 N GLY A 75 CA -0.101 REMARK 500 7 GLY A 75 N GLY A 75 CA -0.097 REMARK 500 8 GLY A 75 N GLY A 75 CA -0.100 REMARK 500 9 GLY A 75 N GLY A 75 CA -0.093 REMARK 500 14 GLY A 75 N GLY A 75 CA -0.109 REMARK 500 16 GLY A 75 N GLY A 75 CA -0.097 REMARK 500 18 GLY A 75 N GLY A 75 CA -0.096 REMARK 500 20 GLY A 75 N GLY A 75 CA -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 9 84.96 67.82 REMARK 500 1 GLU A 12 46.58 -83.72 REMARK 500 1 LYS A 20 90.99 70.91 REMARK 500 1 THR A 22 -72.38 68.81 REMARK 500 1 ASN A 42 82.60 64.77 REMARK 500 1 GLN A 51 122.05 80.07 REMARK 500 1 TYR A 76 75.18 46.01 REMARK 500 1 THR A 79 -38.78 -35.53 REMARK 500 1 ASP A 87 -92.77 89.23 REMARK 500 1 SER A 88 -82.58 168.16 REMARK 500 1 LEU A 89 -54.95 -153.09 REMARK 500 2 GLU A 7 -63.08 -98.88 REMARK 500 2 LYS A 8 -47.61 -178.48 REMARK 500 2 GLU A 9 -68.92 72.18 REMARK 500 2 GLU A 14 29.45 83.72 REMARK 500 2 LYS A 20 93.48 75.11 REMARK 500 2 THR A 22 -38.30 64.97 REMARK 500 2 GLN A 51 99.32 77.63 REMARK 500 2 ASP A 59 70.78 55.14 REMARK 500 2 TYR A 76 100.55 -45.52 REMARK 500 2 THR A 79 -39.46 -36.11 REMARK 500 3 LYS A 2 77.18 64.66 REMARK 500 3 LYS A 11 93.17 70.42 REMARK 500 3 LYS A 20 88.51 68.13 REMARK 500 3 ASN A 42 86.64 66.55 REMARK 500 3 GLN A 51 108.08 76.34 REMARK 500 3 TYR A 76 96.49 -49.38 REMARK 500 3 THR A 79 -35.96 -36.02 REMARK 500 3 LYS A 93 95.18 57.63 REMARK 500 4 LYS A 6 -149.48 -121.97 REMARK 500 4 GLU A 7 65.95 61.36 REMARK 500 4 GLU A 14 21.62 85.29 REMARK 500 4 LYS A 20 89.40 70.09 REMARK 500 4 THR A 22 -69.60 69.88 REMARK 500 4 ASN A 42 87.38 71.52 REMARK 500 4 GLN A 51 113.93 66.34 REMARK 500 4 ASP A 59 10.91 82.82 REMARK 500 4 TYR A 74 61.31 -119.73 REMARK 500 4 TYR A 76 101.05 -34.29 REMARK 500 4 THR A 79 -35.90 -36.11 REMARK 500 4 ASP A 87 61.45 -167.17 REMARK 500 4 SER A 88 -62.11 -95.70 REMARK 500 4 LYS A 93 79.06 60.55 REMARK 500 5 LYS A 3 86.99 69.31 REMARK 500 5 LYS A 8 -75.47 -80.62 REMARK 500 5 LYS A 10 -19.83 -146.19 REMARK 500 5 LYS A 11 150.88 74.49 REMARK 500 5 LYS A 20 88.25 75.00 REMARK 500 5 LEU A 21 -69.90 -99.94 REMARK 500 5 THR A 22 84.37 54.02 REMARK 500 REMARK 500 THIS ENTRY HAS 250 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 71 0.09 SIDE CHAIN REMARK 500 18 ARG A 56 0.09 SIDE CHAIN REMARK 500 19 ARG A 56 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2GTJ A 1 94 UNP O15117 FYB_HUMAN 486 579 SEQADV 2GTJ LEU A 95 UNP O15117 CLONING ARTIFACT SEQADV 2GTJ GLU A 96 UNP O15117 CLONING ARTIFACT SEQRES 1 A 96 GLU LYS LYS GLU GLN LYS GLU LYS GLU LYS LYS GLU GLN SEQRES 2 A 96 GLU ILE LYS LYS LYS PHE LYS LEU THR GLY PRO ILE GLN SEQRES 3 A 96 VAL ILE HIS LEU ALA LYS ALA CYS CYS ASP VAL LYS GLY SEQRES 4 A 96 GLY LYS ASN GLU LEU SER PHE LYS GLN GLY GLU GLN ILE SEQRES 5 A 96 GLU ILE ILE ARG ILE THR ASP ASN PRO GLU GLY LYS TRP SEQRES 6 A 96 LEU GLY ARG THR ALA ARG GLY SER TYR GLY TYR ILE LYS SEQRES 7 A 96 THR THR ALA VAL GLU ILE ASP TYR ASP SER LEU LYS LEU SEQRES 8 A 96 LYS LYS ASP LEU GLU HELIX 1 1 GLU A 12 LYS A 20 1 9 HELIX 2 2 LYS A 78 THR A 80 5 3 SHEET 1 A 4 LEU A 66 ARG A 68 0 SHEET 2 A 4 ILE A 52 ARG A 56 -1 N ILE A 55 O LEU A 66 SHEET 3 A 4 HIS A 29 ALA A 33 -1 N ALA A 31 O ILE A 52 SHEET 4 A 4 VAL A 82 ILE A 84 -1 O GLU A 83 N LYS A 32 SHEET 1 B 2 VAL A 37 LYS A 38 0 SHEET 2 B 2 SER A 45 PHE A 46 -1 O PHE A 46 N VAL A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1