HEADER TRANSPORT PROTEIN 29-APR-06 2GUF TITLE IN MESO CRYSTAL STRUCTURE OF THE COBALAMIN TRANSPORTER, BTUB COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN B12 TRANSPORTER BTUB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COBALAMIN RECEPTOR, OUTER MEMBRANE COBALAMIN TRANSLOCATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, CUBIC MESOPHASE, COBALAMIN, BTUB, COLICIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CAFFREY,V.CHEREZOV,E.YAMASHITA,W.A.CRAMER REVDAT 4 14-FEB-24 2GUF 1 REMARK REVDAT 3 13-JUL-11 2GUF 1 VERSN REVDAT 2 24-FEB-09 2GUF 1 VERSN REVDAT 1 05-DEC-06 2GUF 0 JRNL AUTH V.CHEREZOV,E.YAMASHITA,W.LIU,M.ZHALNINA,W.A.CRAMER,M.CAFFREY JRNL TITL IN MESO STRUCTURE OF THE COBALAMIN TRANSPORTER, BTUB, AT JRNL TITL 2 1.95 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 364 716 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17028020 JRNL DOI 10.1016/J.JMB.2006.09.022 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 48447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4385 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 299 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.69000 REMARK 3 B22 (A**2) : -2.02000 REMARK 3 B33 (A**2) : -2.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.758 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4850 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6509 ; 2.012 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 7.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;37.737 ;23.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 711 ;17.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 681 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3619 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2192 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3207 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 471 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 89 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2775 ; 1.221 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4400 ; 1.968 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2372 ; 3.025 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2109 ; 4.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5859 7.1663 23.1827 REMARK 3 T TENSOR REMARK 3 T11: -0.0911 T22: -0.0076 REMARK 3 T33: 0.0018 T12: 0.0174 REMARK 3 T13: 0.0140 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.5053 L22: 1.3732 REMARK 3 L33: 0.7372 L12: 0.0856 REMARK 3 L13: -0.2212 L23: -0.2516 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.0203 S13: 0.0065 REMARK 3 S21: 0.0567 S22: -0.0230 S23: -0.1493 REMARK 3 S31: 0.0929 S32: 0.1477 S33: 0.0805 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 594 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3549 7.1810 19.9236 REMARK 3 T TENSOR REMARK 3 T11: -0.0474 T22: -0.0184 REMARK 3 T33: -0.0540 T12: 0.0169 REMARK 3 T13: 0.0052 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.3986 L22: 0.5629 REMARK 3 L33: 0.4933 L12: 0.0255 REMARK 3 L13: -0.2878 L23: -0.1988 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0280 S13: -0.0281 REMARK 3 S21: 0.0678 S22: 0.0046 S23: -0.0523 REMARK 3 S31: 0.0876 S32: 0.1050 S33: 0.0285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9124 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51400 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.30500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.34050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.43850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.34050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.43850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 57 REMARK 465 GLY A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 GLN A 62 REMARK 465 GLY A 177 REMARK 465 TYR A 178 REMARK 465 ASP A 179 REMARK 465 VAL A 180 REMARK 465 VAL A 181 REMARK 465 ALA A 182 REMARK 465 TYR A 183 REMARK 465 GLY A 184 REMARK 465 ASN A 185 REMARK 465 THR A 186 REMARK 465 GLY A 187 REMARK 465 THR A 188 REMARK 465 GLN A 189 REMARK 465 ALA A 190 REMARK 465 GLN A 191 REMARK 465 THR A 192 REMARK 465 ASP A 193 REMARK 465 ASN A 194 REMARK 465 ASP A 230 REMARK 465 ALA A 231 REMARK 465 TYR A 232 REMARK 465 TYR A 233 REMARK 465 SER A 234 REMARK 465 PRO A 235 REMARK 465 GLY A 236 REMARK 465 SER A 237 REMARK 465 PRO A 238 REMARK 465 LEU A 239 REMARK 465 LEU A 240 REMARK 465 GLU A 574 REMARK 465 THR A 575 REMARK 465 VAL A 576 REMARK 465 TYR A 577 REMARK 465 GLY A 578 REMARK 465 TYR A 579 REMARK 465 GLN A 580 REMARK 465 THR A 581 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 432 O HOH A 957 1.78 REMARK 500 OH TYR A 221 O HOH A 1032 1.98 REMARK 500 O HOH A 1143 O HOH A 1153 2.14 REMARK 500 O HOH A 952 O HOH A 988 2.14 REMARK 500 O HOH A 1029 O HOH A 1105 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -15.40 77.81 REMARK 500 ASN A 86 101.36 -58.45 REMARK 500 ARG A 114 31.64 -151.03 REMARK 500 ASP A 121 -24.67 96.54 REMARK 500 GLU A 135 78.93 -160.48 REMARK 500 LEU A 160 65.02 -106.59 REMARK 500 HIS A 308 69.09 -110.04 REMARK 500 PRO A 324 -141.09 -77.98 REMARK 500 ASN A 407 117.05 -162.84 REMARK 500 ASP A 513 -7.34 76.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 241 THR A 242 148.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MPG A 701 REMARK 610 MPG A 702 REMARK 610 MPG A 703 REMARK 610 MPG A 704 REMARK 610 MPG A 705 REMARK 610 MPG A 706 REMARK 610 MPG A 707 REMARK 610 MPG A 708 REMARK 610 MPG A 709 REMARK 610 MPG A 710 REMARK 610 MPG A 711 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 904 DBREF 2GUF A 1 594 UNP P06129 BTUB_ECOLI 21 614 SEQRES 1 A 594 GLN ASP THR SER PRO ASP THR LEU VAL VAL THR ALA ASN SEQRES 2 A 594 ARG PHE GLU GLN PRO ARG SER THR VAL LEU ALA PRO THR SEQRES 3 A 594 THR VAL VAL THR ARG GLN ASP ILE ASP ARG TRP GLN SER SEQRES 4 A 594 THR SER VAL ASN ASP VAL LEU ARG ARG LEU PRO GLY VAL SEQRES 5 A 594 ASP ILE THR GLN ASN GLY GLY SER GLY GLN LEU SER SER SEQRES 6 A 594 ILE PHE ILE ARG GLY THR ASN ALA SER HIS VAL LEU VAL SEQRES 7 A 594 LEU ILE ASP GLY VAL ARG LEU ASN LEU ALA GLY VAL SER SEQRES 8 A 594 GLY SER ALA ASP LEU SER GLN PHE PRO ILE ALA LEU VAL SEQRES 9 A 594 GLN ARG VAL GLU TYR ILE ARG GLY PRO ARG SER ALA VAL SEQRES 10 A 594 TYR GLY SER ASP ALA ILE GLY GLY VAL VAL ASN ILE ILE SEQRES 11 A 594 THR THR ARG ASP GLU PRO GLY THR GLU ILE SER ALA GLY SEQRES 12 A 594 TRP GLY SER ASN SER TYR GLN ASN TYR ASP VAL SER THR SEQRES 13 A 594 GLN GLN GLN LEU GLY ASP LYS THR ARG VAL THR LEU LEU SEQRES 14 A 594 GLY ASP TYR ALA HIS THR HIS GLY TYR ASP VAL VAL ALA SEQRES 15 A 594 TYR GLY ASN THR GLY THR GLN ALA GLN THR ASP ASN ASP SEQRES 16 A 594 GLY PHE LEU SER LYS THR LEU TYR GLY ALA LEU GLU HIS SEQRES 17 A 594 ASN PHE THR ASP ALA TRP SER GLY PHE VAL ARG GLY TYR SEQRES 18 A 594 GLY TYR ASP ASN ARG THR ASN TYR ASP ALA TYR TYR SER SEQRES 19 A 594 PRO GLY SER PRO LEU LEU ASP THR ARG LYS LEU TYR SER SEQRES 20 A 594 GLN SER TRP ASP ALA GLY LEU ARG TYR ASN GLY GLU LEU SEQRES 21 A 594 ILE LYS SER GLN LEU ILE THR SER TYR SER HIS SER LYS SEQRES 22 A 594 ASP TYR ASN TYR ASP PRO HIS TYR GLY ARG TYR ASP SER SEQRES 23 A 594 SER ALA THR LEU ASP GLU MET LYS GLN TYR THR VAL GLN SEQRES 24 A 594 TRP ALA ASN ASN VAL ILE VAL GLY HIS GLY SER ILE GLY SEQRES 25 A 594 ALA GLY VAL ASP TRP GLN LYS GLN THR THR THR PRO GLY SEQRES 26 A 594 THR GLY TYR VAL GLU ASP GLY TYR ASP GLN ARG ASN THR SEQRES 27 A 594 GLY ILE TYR LEU THR GLY LEU GLN GLN VAL GLY ASP PHE SEQRES 28 A 594 THR PHE GLU GLY ALA ALA ARG SER ASP ASP ASN SER GLN SEQRES 29 A 594 PHE GLY ARG HIS GLY THR TRP GLN THR SER ALA GLY TRP SEQRES 30 A 594 GLU PHE ILE GLU GLY TYR ARG PHE ILE ALA SER TYR GLY SEQRES 31 A 594 THR SER TYR LYS ALA PRO ASN LEU GLY GLN LEU TYR GLY SEQRES 32 A 594 PHE TYR GLY ASN PRO ASN LEU ASP PRO GLU LYS SER LYS SEQRES 33 A 594 GLN TRP GLU GLY ALA PHE GLU GLY LEU THR ALA GLY VAL SEQRES 34 A 594 ASN TRP ARG ILE SER GLY TYR ARG ASN ASP VAL SER ASP SEQRES 35 A 594 LEU ILE ASP TYR ASP ASP HIS THR LEU LYS TYR TYR ASN SEQRES 36 A 594 GLU GLY LYS ALA ARG ILE LYS GLY VAL GLU ALA THR ALA SEQRES 37 A 594 ASN PHE ASP THR GLY PRO LEU THR HIS THR VAL SER TYR SEQRES 38 A 594 ASP TYR VAL ASP ALA ARG ASN ALA ILE THR ASP THR PRO SEQRES 39 A 594 LEU LEU ARG ARG ALA LYS GLN GLN VAL LYS TYR GLN LEU SEQRES 40 A 594 ASP TRP GLN LEU TYR ASP PHE ASP TRP GLY ILE THR TYR SEQRES 41 A 594 GLN TYR LEU GLY THR ARG TYR ASP LYS ASP TYR SER SER SEQRES 42 A 594 TYR PRO TYR GLN THR VAL LYS MET GLY GLY VAL SER LEU SEQRES 43 A 594 TRP ASP LEU ALA VAL ALA TYR PRO VAL THR SER HIS LEU SEQRES 44 A 594 THR VAL ARG GLY LYS ILE ALA ASN LEU PHE ASP LYS ASP SEQRES 45 A 594 TYR GLU THR VAL TYR GLY TYR GLN THR ALA GLY ARG GLU SEQRES 46 A 594 TYR THR LEU SER GLY SER TYR THR PHE HET MPG A 701 24 HET MPG A 702 24 HET MPG A 703 24 HET MPG A 704 24 HET MPG A 705 24 HET MPG A 706 24 HET MPG A 707 24 HET MPG A 708 24 HET MPG A 709 24 HET MPG A 710 24 HET MPG A 711 24 HET FMT A 801 3 HET MPD A 901 8 HET MPD A 902 8 HET MPD A 903 8 HET MPD A 904 8 HETNAM MPG [(Z)-OCTADEC-9-ENYL] (2R)-2,3-BIS(OXIDANYL)PROPANOATE HETNAM FMT FORMIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 MPG 11(C21 H40 O4) FORMUL 13 FMT C H2 O2 FORMUL 14 MPD 4(C6 H14 O2) FORMUL 18 HOH *297(H2 O) HELIX 1 1 SER A 20 VAL A 22 5 3 HELIX 2 2 ARG A 31 GLN A 38 1 8 HELIX 3 3 VAL A 42 ARG A 47 1 6 HELIX 4 4 SER A 74 VAL A 76 5 3 HELIX 5 5 SER A 91 PHE A 99 5 9 HELIX 6 6 PRO A 100 VAL A 104 5 5 HELIX 7 7 ARG A 114 GLY A 119 1 6 HELIX 8 8 TYR A 328 GLY A 332 5 5 HELIX 9 9 ASN A 397 GLY A 403 1 7 SHEET 1 A 2 LEU A 8 VAL A 9 0 SHEET 2 A 2 GLN A 17 PRO A 18 -1 O GLN A 17 N VAL A 9 SHEET 1 B 5 THR A 26 THR A 30 0 SHEET 2 B 5 ARG A 106 ARG A 111 -1 O TYR A 109 N THR A 27 SHEET 3 B 5 GLY A 125 ILE A 130 -1 O ILE A 130 N ARG A 106 SHEET 4 B 5 LEU A 77 ILE A 80 1 N LEU A 77 O VAL A 127 SHEET 5 B 5 VAL A 83 ARG A 84 -1 O VAL A 83 N ILE A 80 SHEET 1 C 3 VAL A 52 THR A 55 0 SHEET 2 C 3 SER A 65 ILE A 68 -1 O PHE A 67 N ASP A 53 SHEET 3 C 3 THR A 71 ASN A 72 -1 O THR A 71 N ILE A 68 SHEET 1 D23 GLY A 137 GLY A 145 0 SHEET 2 D23 TYR A 149 GLN A 159 -1 O GLN A 157 N GLY A 137 SHEET 3 D23 THR A 164 THR A 175 -1 O LEU A 168 N THR A 156 SHEET 4 D23 PHE A 197 ASN A 209 -1 O GLU A 207 N ARG A 165 SHEET 5 D23 TRP A 214 THR A 227 -1 O VAL A 218 N LEU A 206 SHEET 6 D23 THR A 242 ASN A 257 -1 O ARG A 255 N SER A 215 SHEET 7 D23 ILE A 261 TYR A 277 -1 O TYR A 269 N TRP A 250 SHEET 8 D23 THR A 289 ILE A 305 -1 O ASN A 303 N LYS A 262 SHEET 9 D23 GLY A 309 THR A 323 -1 O THR A 323 N GLU A 292 SHEET 10 D23 TYR A 333 VAL A 348 -1 O ASN A 337 N GLN A 318 SHEET 11 D23 PHE A 351 ASN A 362 -1 O ASP A 361 N THR A 338 SHEET 12 D23 GLY A 366 ILE A 380 -1 O GLY A 366 N ASN A 362 SHEET 13 D23 TYR A 383 LYS A 394 -1 O THR A 391 N TRP A 371 SHEET 14 D23 GLU A 413 THR A 426 -1 O GLU A 423 N ARG A 384 SHEET 15 D23 VAL A 429 ASP A 447 -1 O SER A 441 N LYS A 414 SHEET 16 D23 LYS A 452 THR A 472 -1 O GLU A 456 N LEU A 443 SHEET 17 D23 LEU A 475 ASN A 488 -1 O ASP A 485 N LYS A 462 SHEET 18 D23 GLN A 501 LEU A 511 -1 O GLN A 506 N THR A 478 SHEET 19 D23 PHE A 514 LEU A 523 -1 O TRP A 516 N TRP A 509 SHEET 20 D23 VAL A 544 PRO A 554 -1 O ALA A 550 N GLY A 517 SHEET 21 D23 LEU A 559 ALA A 566 -1 O ILE A 565 N LEU A 549 SHEET 22 D23 GLU A 585 THR A 593 -1 O SER A 589 N ARG A 562 SHEET 23 D23 GLY A 137 GLY A 145 -1 N ILE A 140 O TYR A 592 SHEET 1 E 2 ARG A 526 ASP A 530 0 SHEET 2 E 2 GLN A 537 MET A 541 -1 O MET A 541 N ARG A 526 CISPEP 1 TYR A 534 PRO A 535 0 3.68 SITE 1 AC1 9 TRP A 214 TYR A 256 ASN A 302 LEU A 342 SITE 2 AC1 9 ALA A 466 VAL A 479 TYR A 481 MPG A 704 SITE 3 AC1 9 MPG A 705 SITE 1 AC2 13 ILE A 140 SER A 141 ALA A 142 VAL A 154 SITE 2 AC2 13 ASP A 171 LYS A 200 THR A 201 LEU A 202 SITE 3 AC2 13 GLY A 222 ASP A 224 LEU A 559 GLY A 590 SITE 4 AC2 13 TYR A 592 SITE 1 AC3 9 LEU A 254 SER A 263 VAL A 298 TRP A 300 SITE 2 AC3 9 VAL A 315 THR A 338 TYR A 383 HOH A1143 SITE 3 AC3 9 HOH A1153 SITE 1 AC4 16 ASN A 302 ALA A 313 GLY A 314 ALA A 357 SITE 2 AC4 16 ARG A 358 GLY A 369 THR A 370 TRP A 371 SITE 3 AC4 16 THR A 391 TRP A 431 ALA A 468 PHE A 470 SITE 4 AC4 16 THR A 472 MPG A 701 MPG A 705 MPD A 904 SITE 1 AC5 11 ILE A 311 GLY A 344 ALA A 357 TRP A 371 SITE 2 AC5 11 THR A 472 HIS A 477 VAL A 479 VAL A 503 SITE 3 AC5 11 TYR A 505 MPG A 701 MPG A 704 SITE 1 AC6 3 TYR A 296 TRP A 317 LYS A 319 SITE 1 AC7 8 GLY A 307 GLN A 346 TYR A 520 TYR A 522 SITE 2 AC7 8 SER A 545 MPG A 711 HOH A1133 HOH A1156 SITE 1 AC8 6 THR A 138 VAL A 154 TYR A 221 GLN A 248 SITE 2 AC8 6 PHE A 594 HOH A1103 SITE 1 AC9 9 LEU A 160 GLY A 161 ASP A 162 LYS A 163 SITE 2 AC9 9 THR A 164 HIS A 208 GLY A 216 PHE A 217 SITE 3 AC9 9 TYR A 586 SITE 1 BC1 9 THR A 373 SER A 374 ALA A 375 ALA A 387 SITE 2 BC1 9 SER A 388 GLU A 419 GLY A 420 ALA A 421 SITE 3 BC1 9 MPG A 711 SITE 1 BC2 7 GLN A 346 THR A 373 TYR A 389 LYS A 416 SITE 2 BC2 7 TRP A 418 MPG A 707 MPG A 710 SITE 1 BC3 5 THR A 30 ARG A 31 GLN A 105 ARG A 106 SITE 2 BC3 5 HOH A1162 SITE 1 BC4 7 ASN A 86 ASP A 95 TYR A 223 SER A 272 SITE 2 BC4 7 MET A 293 HOH A 999 HOH A1051 SITE 1 BC5 7 GLN A 318 GLN A 320 GLN A 335 ASN A 337 SITE 2 BC5 7 ALA A 395 ASN A 397 HOH A1167 SITE 1 BC6 6 SER A 91 ALA A 94 TYR A 405 TYR A 446 SITE 2 BC6 6 TYR A 453 HOH A1026 SITE 1 BC7 7 SER A 286 SER A 359 HIS A 368 GLY A 369 SITE 2 BC7 7 ALA A 427 ASP A 471 MPG A 704 CRYST1 72.610 80.877 118.681 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008426 0.00000