data_2GUI # _entry.id 2GUI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GUI pdb_00002gui 10.2210/pdb2gui/pdb RCSB RCSB037565 ? ? WWPDB D_1000037565 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1J53 'Crystal structure of the N-terminal Exonuclease Domain of the Epsilon Subunit of E.coli DNA Polymerase III at pH 8.5' unspecified PDB 1J54 'Crystal structure of the N-terminal exonuclease domain of the epsilon subunit of E.coli DNA polymerase III at pH 5.8' unspecified # _pdbx_database_status.entry_id 2GUI _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-04-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, A.Y.' 1 'Carr, P.D.' 2 'Ollis, D.L.' 3 'Dixon, N.E.' 4 # _citation.id primary _citation.title 'Structure and Function of Cyclized Versions of the Proofreading Exonuclease Subunit E. coli DNA Polymerase III' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, A.Y.' 1 ? primary 'Carr, P.D.' 2 ? primary 'Oliis, D.L.' 3 ? primary 'Dixon, N.E.' 4 ? # _cell.length_a 60.099 _cell.length_b 60.099 _cell.length_c 109.164 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2GUI _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 2GUI _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase III epsilon subunit' 21618.559 1 2.7.7.7 ? 'N-terminal exonuclease domain, residues 2-186' ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 3 non-polymer syn "URIDINE-5'-MONOPHOSPHATE" 324.181 2 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 6 water nat water 18.015 240 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SIEFSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP TFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNS KRTLHGALLDAQILAEVYLAMTGGQTSMATRESG ; _entity_poly.pdbx_seq_one_letter_code_can ;SIEFSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP TFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNS KRTLHGALLDAQILAEVYLAMTGGQTSMATRESG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 GLU n 1 4 PHE n 1 5 SER n 1 6 THR n 1 7 ALA n 1 8 ILE n 1 9 THR n 1 10 ARG n 1 11 GLN n 1 12 ILE n 1 13 VAL n 1 14 LEU n 1 15 ASP n 1 16 THR n 1 17 GLU n 1 18 THR n 1 19 THR n 1 20 GLY n 1 21 MET n 1 22 ASN n 1 23 GLN n 1 24 ILE n 1 25 GLY n 1 26 ALA n 1 27 HIS n 1 28 TYR n 1 29 GLU n 1 30 GLY n 1 31 HIS n 1 32 LYS n 1 33 ILE n 1 34 ILE n 1 35 GLU n 1 36 ILE n 1 37 GLY n 1 38 ALA n 1 39 VAL n 1 40 GLU n 1 41 VAL n 1 42 VAL n 1 43 ASN n 1 44 ARG n 1 45 ARG n 1 46 LEU n 1 47 THR n 1 48 GLY n 1 49 ASN n 1 50 ASN n 1 51 PHE n 1 52 HIS n 1 53 VAL n 1 54 TYR n 1 55 LEU n 1 56 LYS n 1 57 PRO n 1 58 ASP n 1 59 ARG n 1 60 LEU n 1 61 VAL n 1 62 ASP n 1 63 PRO n 1 64 GLU n 1 65 ALA n 1 66 PHE n 1 67 GLY n 1 68 VAL n 1 69 HIS n 1 70 GLY n 1 71 ILE n 1 72 ALA n 1 73 ASP n 1 74 GLU n 1 75 PHE n 1 76 LEU n 1 77 LEU n 1 78 ASP n 1 79 LYS n 1 80 PRO n 1 81 THR n 1 82 PHE n 1 83 ALA n 1 84 GLU n 1 85 VAL n 1 86 ALA n 1 87 ASP n 1 88 GLU n 1 89 PHE n 1 90 MET n 1 91 ASP n 1 92 TYR n 1 93 ILE n 1 94 ARG n 1 95 GLY n 1 96 ALA n 1 97 GLU n 1 98 LEU n 1 99 VAL n 1 100 ILE n 1 101 HIS n 1 102 ASN n 1 103 ALA n 1 104 ALA n 1 105 PHE n 1 106 ASP n 1 107 ILE n 1 108 GLY n 1 109 PHE n 1 110 MET n 1 111 ASP n 1 112 TYR n 1 113 GLU n 1 114 PHE n 1 115 SER n 1 116 LEU n 1 117 LEU n 1 118 LYS n 1 119 ARG n 1 120 ASP n 1 121 ILE n 1 122 PRO n 1 123 LYS n 1 124 THR n 1 125 ASN n 1 126 THR n 1 127 PHE n 1 128 CYS n 1 129 LYS n 1 130 VAL n 1 131 THR n 1 132 ASP n 1 133 SER n 1 134 LEU n 1 135 ALA n 1 136 VAL n 1 137 ALA n 1 138 ARG n 1 139 LYS n 1 140 MET n 1 141 PHE n 1 142 PRO n 1 143 GLY n 1 144 LYS n 1 145 ARG n 1 146 ASN n 1 147 SER n 1 148 LEU n 1 149 ASP n 1 150 ALA n 1 151 LEU n 1 152 CYS n 1 153 ALA n 1 154 ARG n 1 155 TYR n 1 156 GLU n 1 157 ILE n 1 158 ASP n 1 159 ASN n 1 160 SER n 1 161 LYS n 1 162 ARG n 1 163 THR n 1 164 LEU n 1 165 HIS n 1 166 GLY n 1 167 ALA n 1 168 LEU n 1 169 LEU n 1 170 ASP n 1 171 ALA n 1 172 GLN n 1 173 ILE n 1 174 LEU n 1 175 ALA n 1 176 GLU n 1 177 VAL n 1 178 TYR n 1 179 LEU n 1 180 ALA n 1 181 MET n 1 182 THR n 1 183 GLY n 1 184 GLY n 1 185 GLN n 1 186 THR n 1 187 SER n 1 188 MET n 1 189 ALA n 1 190 THR n 1 191 ARG n 1 192 GLU n 1 193 SER n 1 194 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'dnaQ, mutD' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGL1182 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DPO3E_ECOLI _struct_ref.pdbx_db_accession P03007 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAE VADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTL HGALLDAQILAEVYLAMTGGQTSMA ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GUI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 189 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03007 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 186 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 186 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GUI SER A 1 ? UNP P03007 ? ? 'SEE REMARK 999' -2 1 1 2GUI ILE A 2 ? UNP P03007 ? ? 'SEE REMARK 999' -1 2 1 2GUI GLU A 3 ? UNP P03007 ? ? 'SEE REMARK 999' 0 3 1 2GUI PHE A 4 ? UNP P03007 ? ? 'SEE REMARK 999' 1 4 1 2GUI THR A 190 ? UNP P03007 ? ? 'SEE REMARK 999' 187 5 1 2GUI ARG A 191 ? UNP P03007 ? ? 'SEE REMARK 999' 188 6 1 2GUI GLU A 192 ? UNP P03007 ? ? 'SEE REMARK 999' 189 7 1 2GUI SER A 193 ? UNP P03007 ? ? 'SEE REMARK 999' 190 8 1 2GUI GLY A 194 ? UNP P03007 ? ? 'SEE REMARK 999' 191 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U5P non-polymer . "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2GUI _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M Cacodylate Acid, 20% PEG-8K, 2.5 mM UMP, 5 mM MnSO4, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2004-03-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(III) double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.128 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-ID-B' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.128 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-ID-B # _reflns.entry_id 2GUI _reflns.d_resolution_low 26.9 _reflns.d_resolution_high 1.6 _reflns.number_obs 27900 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 9.0 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 96.2 _reflns_shell.Rmerge_I_obs 0.155 _reflns_shell.meanI_over_sigI_obs 4.97 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all 2618 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.600 _refine.ls_d_res_low 26.880 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.830 _refine.ls_number_reflns_obs 25755 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.16195 _refine.ls_R_factor_R_work 0.16016 _refine.ls_R_factor_R_free 0.19746 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1366 _refine.B_iso_mean 13.751 _refine.aniso_B[1][1] 0.000 _refine.aniso_B[2][2] 0.000 _refine.aniso_B[3][3] 0.000 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.pdbx_overall_ESU_R 0.084 _refine.pdbx_overall_ESU_R_Free 0.085 _refine.overall_SU_ML 0.046 _refine.overall_SU_B 1.244 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2GUI _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.16195 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 'PDB entry 1J53' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1368 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 240 _refine_hist.number_atoms_total 1658 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 26.880 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1503 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2042 1.372 1.981 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 189 5.810 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 69 34.412 24.203 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 245 11.732 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 22.647 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 231 0.078 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1135 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 864 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1092 0.317 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 252 0.135 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 37 0.220 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 31 0.094 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 927 0.718 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1474 1.185 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 622 1.918 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 568 3.085 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.641 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.020 _refine_ls_shell.number_reflns_R_work 1837 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.R_factor_R_free 0.253 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1933 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GUI _struct.title 'Structure and Function of Cyclized Versions of the Proofreading Exonuclease Subunit of E. coli DNA Polymerase III' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GUI _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'DNA polymerase proofreading domain, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 62 ? GLY A 70 ? ASP A 59 GLY A 67 1 ? 9 HELX_P HELX_P2 2 ALA A 72 ? LEU A 77 ? ALA A 69 LEU A 74 1 ? 6 HELX_P HELX_P3 3 THR A 81 ? ARG A 94 ? THR A 78 ARG A 91 1 ? 14 HELX_P HELX_P4 4 ALA A 103 ? LEU A 117 ? ALA A 100 LEU A 114 1 ? 15 HELX_P HELX_P5 5 LYS A 123 ? PHE A 127 ? LYS A 120 PHE A 124 5 ? 5 HELX_P HELX_P6 6 SER A 133 ? PHE A 141 ? SER A 130 PHE A 138 1 ? 9 HELX_P HELX_P7 7 SER A 147 ? TYR A 155 ? SER A 144 TYR A 152 1 ? 9 HELX_P HELX_P8 8 GLY A 166 ? THR A 182 ? GLY A 163 THR A 179 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 15 OD1 ? ? ? 1_555 B MN . MN ? ? A ASP 12 A MN 3000 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc2 metalc ? ? A ASP 15 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 12 A MN 3001 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc3 metalc ? ? A GLU 17 OE2 ? ? ? 1_555 C MN . MN ? ? A GLU 14 A MN 3001 1_555 ? ? ? ? ? ? ? 1.970 ? ? metalc4 metalc ? ? A ASP 170 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 167 A MN 3001 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc5 metalc ? ? D U5P . O1P ? ? ? 1_555 B MN . MN ? ? A U5P 2000 A MN 3000 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc6 metalc ? ? D U5P . O3P ? ? ? 1_555 B MN . MN ? ? A U5P 2000 A MN 3000 1_555 ? ? ? ? ? ? ? 2.420 ? ? metalc7 metalc ? ? D U5P . O3P ? ? ? 1_555 C MN . MN ? ? A U5P 2000 A MN 3001 1_555 ? ? ? ? ? ? ? 1.898 ? ? metalc8 metalc ? ? B MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 3000 A HOH 5002 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc9 metalc ? ? B MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 3000 A HOH 5012 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc10 metalc ? ? B MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 3000 A HOH 5024 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc11 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 3001 A HOH 5100 1_555 ? ? ? ? ? ? ? 2.335 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 45 ? LEU A 46 ? ARG A 42 LEU A 43 A 2 ILE A 33 ? VAL A 42 ? ILE A 30 VAL A 39 A 3 PHE A 51 ? TYR A 54 ? PHE A 48 TYR A 51 B 1 ARG A 45 ? LEU A 46 ? ARG A 42 LEU A 43 B 2 ILE A 33 ? VAL A 42 ? ILE A 30 VAL A 39 B 3 ARG A 10 ? THR A 18 ? ARG A 7 THR A 15 B 4 GLU A 97 ? ILE A 100 ? GLU A 94 ILE A 97 B 5 LYS A 129 ? ASP A 132 ? LYS A 126 ASP A 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 45 ? O ARG A 42 N VAL A 42 ? N VAL A 39 A 2 3 N ILE A 36 ? N ILE A 33 O VAL A 53 ? O VAL A 50 B 1 2 O ARG A 45 ? O ARG A 42 N VAL A 42 ? N VAL A 39 B 2 3 O VAL A 41 ? O VAL A 38 N GLN A 11 ? N GLN A 8 B 3 4 N ILE A 12 ? N ILE A 9 O GLU A 97 ? O GLU A 94 B 4 5 N LEU A 98 ? N LEU A 95 O THR A 131 ? O THR A 128 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 3000 ? 6 'BINDING SITE FOR RESIDUE MN A 3000' AC2 Software A MN 3001 ? 6 'BINDING SITE FOR RESIDUE MN A 3001' AC3 Software A U5P 2000 ? 19 'BINDING SITE FOR RESIDUE U5P A 2000' AC4 Software A U5P 2100 ? 12 'BINDING SITE FOR RESIDUE U5P A 2100' AC5 Software A EDO 4000 ? 1 'BINDING SITE FOR RESIDUE EDO A 4000' AC6 Software A EDO 5000 ? 5 'BINDING SITE FOR RESIDUE EDO A 5000' AC7 Software A PEG 3824 ? 8 'BINDING SITE FOR RESIDUE PEG A 3824' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 15 ? ASP A 12 . ? 1_555 ? 2 AC1 6 U5P D . ? U5P A 2000 . ? 1_555 ? 3 AC1 6 MN C . ? MN A 3001 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH A 5002 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH A 5012 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 5024 . ? 1_555 ? 7 AC2 6 ASP A 15 ? ASP A 12 . ? 1_555 ? 8 AC2 6 GLU A 17 ? GLU A 14 . ? 1_555 ? 9 AC2 6 ASP A 170 ? ASP A 167 . ? 1_555 ? 10 AC2 6 U5P D . ? U5P A 2000 . ? 1_555 ? 11 AC2 6 MN B . ? MN A 3000 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH A 5100 . ? 1_555 ? 13 AC3 19 ASP A 15 ? ASP A 12 . ? 1_555 ? 14 AC3 19 THR A 16 ? THR A 13 . ? 1_555 ? 15 AC3 19 GLU A 17 ? GLU A 14 . ? 1_555 ? 16 AC3 19 THR A 18 ? THR A 15 . ? 1_555 ? 17 AC3 19 GLY A 20 ? GLY A 17 . ? 1_555 ? 18 AC3 19 MET A 21 ? MET A 18 . ? 1_555 ? 19 AC3 19 GLU A 64 ? GLU A 61 . ? 1_555 ? 20 AC3 19 ALA A 65 ? ALA A 62 . ? 1_555 ? 21 AC3 19 VAL A 68 ? VAL A 65 . ? 1_555 ? 22 AC3 19 HIS A 69 ? HIS A 66 . ? 1_555 ? 23 AC3 19 PHE A 105 ? PHE A 102 . ? 1_555 ? 24 AC3 19 HIS A 165 ? HIS A 162 . ? 1_555 ? 25 AC3 19 ASP A 170 ? ASP A 167 . ? 1_555 ? 26 AC3 19 U5P E . ? U5P A 2100 . ? 1_555 ? 27 AC3 19 MN B . ? MN A 3000 . ? 1_555 ? 28 AC3 19 MN C . ? MN A 3001 . ? 1_555 ? 29 AC3 19 HOH I . ? HOH A 5100 . ? 1_555 ? 30 AC3 19 HOH I . ? HOH A 5102 . ? 1_555 ? 31 AC3 19 HOH I . ? HOH A 5175 . ? 1_555 ? 32 AC4 12 HIS A 101 ? HIS A 98 . ? 1_555 ? 33 AC4 12 ASN A 102 ? ASN A 99 . ? 1_555 ? 34 AC4 12 SER A 147 ? SER A 144 . ? 1_555 ? 35 AC4 12 LEU A 148 ? LEU A 145 . ? 1_555 ? 36 AC4 12 ARG A 162 ? ARG A 159 . ? 1_555 ? 37 AC4 12 HIS A 165 ? HIS A 162 . ? 1_555 ? 38 AC4 12 U5P D . ? U5P A 2000 . ? 1_555 ? 39 AC4 12 HOH I . ? HOH A 5012 . ? 1_555 ? 40 AC4 12 HOH I . ? HOH A 5023 . ? 3_555 ? 41 AC4 12 HOH I . ? HOH A 5030 . ? 1_555 ? 42 AC4 12 HOH I . ? HOH A 5175 . ? 1_555 ? 43 AC4 12 HOH I . ? HOH A 5191 . ? 1_555 ? 44 AC5 1 PHE A 127 ? PHE A 124 . ? 1_555 ? 45 AC6 5 ILE A 107 ? ILE A 104 . ? 1_555 ? 46 AC6 5 ASN A 125 ? ASN A 122 . ? 1_555 ? 47 AC6 5 VAL A 130 ? VAL A 127 . ? 1_555 ? 48 AC6 5 HOH I . ? HOH A 5146 . ? 1_555 ? 49 AC6 5 HOH I . ? HOH A 5153 . ? 1_555 ? 50 AC7 8 ILE A 24 ? ILE A 21 . ? 4_454 ? 51 AC7 8 GLY A 25 ? GLY A 22 . ? 4_454 ? 52 AC7 8 HIS A 69 ? HIS A 66 . ? 1_555 ? 53 AC7 8 GLY A 70 ? GLY A 67 . ? 1_555 ? 54 AC7 8 PHE A 75 ? PHE A 72 . ? 1_555 ? 55 AC7 8 LEU A 164 ? LEU A 161 . ? 1_555 ? 56 AC7 8 HOH I . ? HOH A 5097 . ? 1_555 ? 57 AC7 8 HOH I . ? HOH A 5198 . ? 4_454 ? # _atom_sites.entry_id 2GUI _atom_sites.fract_transf_matrix[1][1] 0.01664 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01664 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00916 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ILE 2 -1 ? ? ? A . n A 1 3 GLU 3 0 ? ? ? A . n A 1 4 PHE 4 1 ? ? ? A . n A 1 5 SER 5 2 ? ? ? A . n A 1 6 THR 6 3 ? ? ? A . n A 1 7 ALA 7 4 ? ? ? A . n A 1 8 ILE 8 5 5 ILE ILE A . n A 1 9 THR 9 6 6 THR THR A . n A 1 10 ARG 10 7 7 ARG ARG A . n A 1 11 GLN 11 8 8 GLN GLN A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 VAL 13 10 10 VAL VAL A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 ASP 15 12 12 ASP ASP A . n A 1 16 THR 16 13 13 THR THR A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 THR 19 16 16 THR THR A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 MET 21 18 18 MET MET A . n A 1 22 ASN 22 19 19 ASN ASN A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 ILE 24 21 21 ILE ILE A . n A 1 25 GLY 25 22 22 GLY GLY A . n A 1 26 ALA 26 23 23 ALA ALA A . n A 1 27 HIS 27 24 24 HIS HIS A . n A 1 28 TYR 28 25 25 TYR TYR A . n A 1 29 GLU 29 26 26 GLU GLU A . n A 1 30 GLY 30 27 27 GLY GLY A . n A 1 31 HIS 31 28 28 HIS HIS A . n A 1 32 LYS 32 29 29 LYS LYS A . n A 1 33 ILE 33 30 30 ILE ILE A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 GLU 35 32 32 GLU GLU A . n A 1 36 ILE 36 33 33 ILE ILE A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 VAL 39 36 36 VAL VAL A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 VAL 41 38 38 VAL VAL A . n A 1 42 VAL 42 39 39 VAL VAL A . n A 1 43 ASN 43 40 40 ASN ASN A . n A 1 44 ARG 44 41 41 ARG ARG A . n A 1 45 ARG 45 42 42 ARG ARG A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 THR 47 44 44 THR THR A . n A 1 48 GLY 48 45 45 GLY GLY A . n A 1 49 ASN 49 46 46 ASN ASN A . n A 1 50 ASN 50 47 47 ASN ASN A . n A 1 51 PHE 51 48 48 PHE PHE A . n A 1 52 HIS 52 49 49 HIS HIS A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 TYR 54 51 51 TYR TYR A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 LYS 56 53 53 LYS LYS A . n A 1 57 PRO 57 54 54 PRO PRO A . n A 1 58 ASP 58 55 55 ASP ASP A . n A 1 59 ARG 59 56 56 ARG ARG A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 VAL 61 58 58 VAL VAL A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 PRO 63 60 60 PRO PRO A . n A 1 64 GLU 64 61 61 GLU GLU A . n A 1 65 ALA 65 62 62 ALA ALA A . n A 1 66 PHE 66 63 63 PHE PHE A . n A 1 67 GLY 67 64 64 GLY GLY A . n A 1 68 VAL 68 65 65 VAL VAL A . n A 1 69 HIS 69 66 66 HIS HIS A . n A 1 70 GLY 70 67 67 GLY GLY A . n A 1 71 ILE 71 68 68 ILE ILE A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 ASP 73 70 70 ASP ASP A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 LEU 77 74 74 LEU LEU A . n A 1 78 ASP 78 75 75 ASP ASP A . n A 1 79 LYS 79 76 76 LYS LYS A . n A 1 80 PRO 80 77 77 PRO PRO A . n A 1 81 THR 81 78 78 THR THR A . n A 1 82 PHE 82 79 79 PHE PHE A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 VAL 85 82 82 VAL VAL A . n A 1 86 ALA 86 83 83 ALA ALA A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 GLU 88 85 85 GLU GLU A . n A 1 89 PHE 89 86 86 PHE PHE A . n A 1 90 MET 90 87 87 MET MET A . n A 1 91 ASP 91 88 88 ASP ASP A . n A 1 92 TYR 92 89 89 TYR TYR A . n A 1 93 ILE 93 90 90 ILE ILE A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 GLY 95 92 92 GLY GLY A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 LEU 98 95 95 LEU LEU A . n A 1 99 VAL 99 96 96 VAL VAL A . n A 1 100 ILE 100 97 97 ILE ILE A . n A 1 101 HIS 101 98 98 HIS HIS A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 ALA 103 100 100 ALA ALA A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 PHE 105 102 102 PHE PHE A . n A 1 106 ASP 106 103 103 ASP ASP A . n A 1 107 ILE 107 104 104 ILE ILE A . n A 1 108 GLY 108 105 105 GLY GLY A . n A 1 109 PHE 109 106 106 PHE PHE A . n A 1 110 MET 110 107 107 MET MET A . n A 1 111 ASP 111 108 108 ASP ASP A . n A 1 112 TYR 112 109 109 TYR TYR A . n A 1 113 GLU 113 110 110 GLU GLU A . n A 1 114 PHE 114 111 111 PHE PHE A . n A 1 115 SER 115 112 112 SER SER A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 LEU 117 114 114 LEU LEU A . n A 1 118 LYS 118 115 115 LYS LYS A . n A 1 119 ARG 119 116 116 ARG ARG A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 ILE 121 118 118 ILE ILE A . n A 1 122 PRO 122 119 119 PRO PRO A . n A 1 123 LYS 123 120 120 LYS LYS A . n A 1 124 THR 124 121 121 THR THR A . n A 1 125 ASN 125 122 122 ASN ASN A . n A 1 126 THR 126 123 123 THR THR A . n A 1 127 PHE 127 124 124 PHE PHE A . n A 1 128 CYS 128 125 125 CYS CYS A . n A 1 129 LYS 129 126 126 LYS LYS A . n A 1 130 VAL 130 127 127 VAL VAL A . n A 1 131 THR 131 128 128 THR THR A . n A 1 132 ASP 132 129 129 ASP ASP A . n A 1 133 SER 133 130 130 SER SER A . n A 1 134 LEU 134 131 131 LEU LEU A . n A 1 135 ALA 135 132 132 ALA ALA A . n A 1 136 VAL 136 133 133 VAL VAL A . n A 1 137 ALA 137 134 134 ALA ALA A . n A 1 138 ARG 138 135 135 ARG ARG A . n A 1 139 LYS 139 136 136 LYS LYS A . n A 1 140 MET 140 137 137 MET MET A . n A 1 141 PHE 141 138 138 PHE PHE A . n A 1 142 PRO 142 139 139 PRO PRO A . n A 1 143 GLY 143 140 140 GLY GLY A . n A 1 144 LYS 144 141 141 LYS LYS A . n A 1 145 ARG 145 142 142 ARG ARG A . n A 1 146 ASN 146 143 143 ASN ASN A . n A 1 147 SER 147 144 144 SER SER A . n A 1 148 LEU 148 145 145 LEU LEU A . n A 1 149 ASP 149 146 146 ASP ASP A . n A 1 150 ALA 150 147 147 ALA ALA A . n A 1 151 LEU 151 148 148 LEU LEU A . n A 1 152 CYS 152 149 149 CYS CYS A . n A 1 153 ALA 153 150 150 ALA ALA A . n A 1 154 ARG 154 151 151 ARG ARG A . n A 1 155 TYR 155 152 152 TYR TYR A . n A 1 156 GLU 156 153 153 GLU GLU A . n A 1 157 ILE 157 154 154 ILE ILE A . n A 1 158 ASP 158 155 155 ASP ASP A . n A 1 159 ASN 159 156 156 ASN ASN A . n A 1 160 SER 160 157 157 SER SER A . n A 1 161 LYS 161 158 158 LYS LYS A . n A 1 162 ARG 162 159 159 ARG ARG A . n A 1 163 THR 163 160 160 THR THR A . n A 1 164 LEU 164 161 161 LEU LEU A . n A 1 165 HIS 165 162 162 HIS HIS A . n A 1 166 GLY 166 163 163 GLY GLY A . n A 1 167 ALA 167 164 164 ALA ALA A . n A 1 168 LEU 168 165 165 LEU LEU A . n A 1 169 LEU 169 166 166 LEU LEU A . n A 1 170 ASP 170 167 167 ASP ASP A . n A 1 171 ALA 171 168 168 ALA ALA A . n A 1 172 GLN 172 169 169 GLN GLN A . n A 1 173 ILE 173 170 170 ILE ILE A . n A 1 174 LEU 174 171 171 LEU LEU A . n A 1 175 ALA 175 172 172 ALA ALA A . n A 1 176 GLU 176 173 173 GLU GLU A . n A 1 177 VAL 177 174 174 VAL VAL A . n A 1 178 TYR 178 175 175 TYR TYR A . n A 1 179 LEU 179 176 176 LEU LEU A . n A 1 180 ALA 180 177 177 ALA ALA A . n A 1 181 MET 181 178 178 MET MET A . n A 1 182 THR 182 179 179 THR THR A . n A 1 183 GLY 183 180 180 GLY GLY A . n A 1 184 GLY 184 181 ? ? ? A . n A 1 185 GLN 185 182 ? ? ? A . n A 1 186 THR 186 183 ? ? ? A . n A 1 187 SER 187 184 ? ? ? A . n A 1 188 MET 188 185 ? ? ? A . n A 1 189 ALA 189 186 ? ? ? A . n A 1 190 THR 190 187 ? ? ? A . n A 1 191 ARG 191 188 ? ? ? A . n A 1 192 GLU 192 189 ? ? ? A . n A 1 193 SER 193 190 ? ? ? A . n A 1 194 GLY 194 191 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 3000 3000 MN MN A . C 2 MN 1 3001 3001 MN MN A . D 3 U5P 1 2000 2000 U5P U5P A . E 3 U5P 1 2100 2100 U5P U5P A . F 4 EDO 1 4000 4000 EDO EGL A . G 4 EDO 1 5000 5000 EDO EGL A . H 5 PEG 1 3824 3824 PEG PEG A . I 6 HOH 1 5001 1 HOH HOH A . I 6 HOH 2 5002 2 HOH HOH A . I 6 HOH 3 5003 3 HOH HOH A . I 6 HOH 4 5004 4 HOH HOH A . I 6 HOH 5 5005 5 HOH HOH A . I 6 HOH 6 5006 6 HOH HOH A . I 6 HOH 7 5007 7 HOH HOH A . I 6 HOH 8 5008 8 HOH HOH A . I 6 HOH 9 5009 9 HOH HOH A . I 6 HOH 10 5010 10 HOH HOH A . I 6 HOH 11 5011 11 HOH HOH A . I 6 HOH 12 5012 12 HOH HOH A . I 6 HOH 13 5013 13 HOH HOH A . I 6 HOH 14 5014 14 HOH HOH A . I 6 HOH 15 5015 15 HOH HOH A . I 6 HOH 16 5016 16 HOH HOH A . I 6 HOH 17 5017 17 HOH HOH A . I 6 HOH 18 5018 18 HOH HOH A . I 6 HOH 19 5019 19 HOH HOH A . I 6 HOH 20 5020 20 HOH HOH A . I 6 HOH 21 5021 21 HOH HOH A . I 6 HOH 22 5022 22 HOH HOH A . I 6 HOH 23 5023 23 HOH HOH A . I 6 HOH 24 5024 24 HOH HOH A . I 6 HOH 25 5025 25 HOH HOH A . I 6 HOH 26 5026 26 HOH HOH A . I 6 HOH 27 5027 27 HOH HOH A . I 6 HOH 28 5028 28 HOH HOH A . I 6 HOH 29 5029 29 HOH HOH A . I 6 HOH 30 5030 30 HOH HOH A . I 6 HOH 31 5031 31 HOH HOH A . I 6 HOH 32 5032 32 HOH HOH A . I 6 HOH 33 5033 33 HOH HOH A . I 6 HOH 34 5034 34 HOH HOH A . I 6 HOH 35 5035 35 HOH HOH A . I 6 HOH 36 5036 36 HOH HOH A . I 6 HOH 37 5037 37 HOH HOH A . I 6 HOH 38 5038 38 HOH HOH A . I 6 HOH 39 5039 39 HOH HOH A . I 6 HOH 40 5040 40 HOH HOH A . I 6 HOH 41 5041 41 HOH HOH A . I 6 HOH 42 5042 42 HOH HOH A . I 6 HOH 43 5043 43 HOH HOH A . I 6 HOH 44 5044 44 HOH HOH A . I 6 HOH 45 5045 45 HOH HOH A . I 6 HOH 46 5046 46 HOH HOH A . I 6 HOH 47 5047 47 HOH HOH A . I 6 HOH 48 5048 48 HOH HOH A . I 6 HOH 49 5049 49 HOH HOH A . I 6 HOH 50 5050 50 HOH HOH A . I 6 HOH 51 5051 51 HOH HOH A . I 6 HOH 52 5052 52 HOH HOH A . I 6 HOH 53 5053 53 HOH HOH A . I 6 HOH 54 5054 54 HOH HOH A . I 6 HOH 55 5055 55 HOH HOH A . I 6 HOH 56 5056 56 HOH HOH A . I 6 HOH 57 5057 57 HOH HOH A . I 6 HOH 58 5058 58 HOH HOH A . I 6 HOH 59 5059 59 HOH HOH A . I 6 HOH 60 5060 60 HOH HOH A . I 6 HOH 61 5061 61 HOH HOH A . I 6 HOH 62 5062 62 HOH HOH A . I 6 HOH 63 5063 63 HOH HOH A . I 6 HOH 64 5064 64 HOH HOH A . I 6 HOH 65 5065 65 HOH HOH A . I 6 HOH 66 5066 66 HOH HOH A . I 6 HOH 67 5067 67 HOH HOH A . I 6 HOH 68 5068 68 HOH HOH A . I 6 HOH 69 5069 69 HOH HOH A . I 6 HOH 70 5070 70 HOH HOH A . I 6 HOH 71 5071 71 HOH HOH A . I 6 HOH 72 5072 72 HOH HOH A . I 6 HOH 73 5073 73 HOH HOH A . I 6 HOH 74 5074 74 HOH HOH A . I 6 HOH 75 5075 75 HOH HOH A . I 6 HOH 76 5076 76 HOH HOH A . I 6 HOH 77 5077 77 HOH HOH A . I 6 HOH 78 5078 78 HOH HOH A . I 6 HOH 79 5079 79 HOH HOH A . I 6 HOH 80 5080 80 HOH HOH A . I 6 HOH 81 5081 81 HOH HOH A . I 6 HOH 82 5082 82 HOH HOH A . I 6 HOH 83 5083 83 HOH HOH A . I 6 HOH 84 5084 84 HOH HOH A . I 6 HOH 85 5085 85 HOH HOH A . I 6 HOH 86 5086 86 HOH HOH A . I 6 HOH 87 5087 87 HOH HOH A . I 6 HOH 88 5088 88 HOH HOH A . I 6 HOH 89 5089 89 HOH HOH A . I 6 HOH 90 5090 90 HOH HOH A . I 6 HOH 91 5091 91 HOH HOH A . I 6 HOH 92 5092 92 HOH HOH A . I 6 HOH 93 5093 93 HOH HOH A . I 6 HOH 94 5094 94 HOH HOH A . I 6 HOH 95 5095 95 HOH HOH A . I 6 HOH 96 5096 96 HOH HOH A . I 6 HOH 97 5097 97 HOH HOH A . I 6 HOH 98 5098 98 HOH HOH A . I 6 HOH 99 5099 99 HOH HOH A . I 6 HOH 100 5100 100 HOH HOH A . I 6 HOH 101 5101 101 HOH HOH A . I 6 HOH 102 5102 102 HOH HOH A . I 6 HOH 103 5103 103 HOH HOH A . I 6 HOH 104 5104 104 HOH HOH A . I 6 HOH 105 5105 105 HOH HOH A . I 6 HOH 106 5106 106 HOH HOH A . I 6 HOH 107 5107 107 HOH HOH A . I 6 HOH 108 5108 108 HOH HOH A . I 6 HOH 109 5109 109 HOH HOH A . I 6 HOH 110 5110 110 HOH HOH A . I 6 HOH 111 5111 111 HOH HOH A . I 6 HOH 112 5112 112 HOH HOH A . I 6 HOH 113 5113 113 HOH HOH A . I 6 HOH 114 5114 114 HOH HOH A . I 6 HOH 115 5115 115 HOH HOH A . I 6 HOH 116 5116 116 HOH HOH A . I 6 HOH 117 5117 117 HOH HOH A . I 6 HOH 118 5118 118 HOH HOH A . I 6 HOH 119 5119 119 HOH HOH A . I 6 HOH 120 5120 120 HOH HOH A . I 6 HOH 121 5121 121 HOH HOH A . I 6 HOH 122 5122 122 HOH HOH A . I 6 HOH 123 5123 123 HOH HOH A . I 6 HOH 124 5124 124 HOH HOH A . I 6 HOH 125 5125 125 HOH HOH A . I 6 HOH 126 5126 126 HOH HOH A . I 6 HOH 127 5127 127 HOH HOH A . I 6 HOH 128 5128 128 HOH HOH A . I 6 HOH 129 5129 129 HOH HOH A . I 6 HOH 130 5130 130 HOH HOH A . I 6 HOH 131 5131 131 HOH HOH A . I 6 HOH 132 5132 132 HOH HOH A . I 6 HOH 133 5133 133 HOH HOH A . I 6 HOH 134 5134 134 HOH HOH A . I 6 HOH 135 5135 135 HOH HOH A . I 6 HOH 136 5136 136 HOH HOH A . I 6 HOH 137 5137 137 HOH HOH A . I 6 HOH 138 5138 138 HOH HOH A . I 6 HOH 139 5139 139 HOH HOH A . I 6 HOH 140 5140 140 HOH HOH A . I 6 HOH 141 5141 141 HOH HOH A . I 6 HOH 142 5142 142 HOH HOH A . I 6 HOH 143 5143 143 HOH HOH A . I 6 HOH 144 5144 144 HOH HOH A . I 6 HOH 145 5145 145 HOH HOH A . I 6 HOH 146 5146 146 HOH HOH A . I 6 HOH 147 5147 147 HOH HOH A . I 6 HOH 148 5148 148 HOH HOH A . I 6 HOH 149 5149 149 HOH HOH A . I 6 HOH 150 5150 150 HOH HOH A . I 6 HOH 151 5151 151 HOH HOH A . I 6 HOH 152 5152 152 HOH HOH A . I 6 HOH 153 5153 153 HOH HOH A . I 6 HOH 154 5154 154 HOH HOH A . I 6 HOH 155 5155 155 HOH HOH A . I 6 HOH 156 5156 156 HOH HOH A . I 6 HOH 157 5157 157 HOH HOH A . I 6 HOH 158 5158 158 HOH HOH A . I 6 HOH 159 5159 159 HOH HOH A . I 6 HOH 160 5160 160 HOH HOH A . I 6 HOH 161 5161 161 HOH HOH A . I 6 HOH 162 5162 162 HOH HOH A . I 6 HOH 163 5163 163 HOH HOH A . I 6 HOH 164 5164 164 HOH HOH A . I 6 HOH 165 5165 165 HOH HOH A . I 6 HOH 166 5166 166 HOH HOH A . I 6 HOH 167 5167 167 HOH HOH A . I 6 HOH 168 5168 168 HOH HOH A . I 6 HOH 169 5169 169 HOH HOH A . I 6 HOH 170 5170 170 HOH HOH A . I 6 HOH 171 5171 171 HOH HOH A . I 6 HOH 172 5172 172 HOH HOH A . I 6 HOH 173 5173 173 HOH HOH A . I 6 HOH 174 5174 174 HOH HOH A . I 6 HOH 175 5175 175 HOH HOH A . I 6 HOH 176 5176 176 HOH HOH A . I 6 HOH 177 5177 177 HOH HOH A . I 6 HOH 178 5178 178 HOH HOH A . I 6 HOH 179 5179 179 HOH HOH A . I 6 HOH 180 5180 180 HOH HOH A . I 6 HOH 181 5181 181 HOH HOH A . I 6 HOH 182 5182 182 HOH HOH A . I 6 HOH 183 5183 183 HOH HOH A . I 6 HOH 184 5184 184 HOH HOH A . I 6 HOH 185 5185 185 HOH HOH A . I 6 HOH 186 5186 186 HOH HOH A . I 6 HOH 187 5187 187 HOH HOH A . I 6 HOH 188 5188 188 HOH HOH A . I 6 HOH 189 5189 189 HOH HOH A . I 6 HOH 190 5190 190 HOH HOH A . I 6 HOH 191 5191 191 HOH HOH A . I 6 HOH 192 5192 192 HOH HOH A . I 6 HOH 193 5193 193 HOH HOH A . I 6 HOH 194 5194 194 HOH HOH A . I 6 HOH 195 5195 195 HOH HOH A . I 6 HOH 196 5196 196 HOH HOH A . I 6 HOH 197 5197 197 HOH HOH A . I 6 HOH 198 5198 198 HOH HOH A . I 6 HOH 199 5199 199 HOH HOH A . I 6 HOH 200 5200 200 HOH HOH A . I 6 HOH 201 5201 201 HOH HOH A . I 6 HOH 202 5202 202 HOH HOH A . I 6 HOH 203 5203 203 HOH HOH A . I 6 HOH 204 5204 204 HOH HOH A . I 6 HOH 205 5205 205 HOH HOH A . I 6 HOH 206 5206 206 HOH HOH A . I 6 HOH 207 5207 207 HOH HOH A . I 6 HOH 208 5208 208 HOH HOH A . I 6 HOH 209 5209 209 HOH HOH A . I 6 HOH 210 5210 210 HOH HOH A . I 6 HOH 211 5211 211 HOH HOH A . I 6 HOH 212 5212 212 HOH HOH A . I 6 HOH 213 5213 213 HOH HOH A . I 6 HOH 214 5214 214 HOH HOH A . I 6 HOH 215 5215 215 HOH HOH A . I 6 HOH 216 5216 216 HOH HOH A . I 6 HOH 217 5217 217 HOH HOH A . I 6 HOH 218 5218 218 HOH HOH A . I 6 HOH 219 5219 219 HOH HOH A . I 6 HOH 220 5220 220 HOH HOH A . I 6 HOH 221 5221 221 HOH HOH A . I 6 HOH 222 5222 222 HOH HOH A . I 6 HOH 223 5223 223 HOH HOH A . I 6 HOH 224 5224 224 HOH HOH A . I 6 HOH 225 5225 225 HOH HOH A . I 6 HOH 226 5226 226 HOH HOH A . I 6 HOH 227 5227 227 HOH HOH A . I 6 HOH 228 5228 228 HOH HOH A . I 6 HOH 229 5229 229 HOH HOH A . I 6 HOH 230 5230 230 HOH HOH A . I 6 HOH 231 5231 231 HOH HOH A . I 6 HOH 232 5232 232 HOH HOH A . I 6 HOH 233 5233 233 HOH HOH A . I 6 HOH 234 5234 234 HOH HOH A . I 6 HOH 235 5235 235 HOH HOH A . I 6 HOH 236 5236 236 HOH HOH A . I 6 HOH 237 5237 237 HOH HOH A . I 6 HOH 238 5238 238 HOH HOH A . I 6 HOH 239 5239 239 HOH HOH A . I 6 HOH 240 5240 240 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 5110 ? I HOH . 2 1 A HOH 5132 ? I HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O1P ? D U5P . ? A U5P 2000 ? 1_555 159.2 ? 2 OD1 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O3P ? D U5P . ? A U5P 2000 ? 1_555 96.4 ? 3 O1P ? D U5P . ? A U5P 2000 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O3P ? D U5P . ? A U5P 2000 ? 1_555 62.7 ? 4 OD1 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5002 ? 1_555 86.5 ? 5 O1P ? D U5P . ? A U5P 2000 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5002 ? 1_555 93.1 ? 6 O3P ? D U5P . ? A U5P 2000 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5002 ? 1_555 88.8 ? 7 OD1 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5012 ? 1_555 84.7 ? 8 O1P ? D U5P . ? A U5P 2000 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5012 ? 1_555 95.8 ? 9 O3P ? D U5P . ? A U5P 2000 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5012 ? 1_555 94.0 ? 10 O ? I HOH . ? A HOH 5002 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5012 ? 1_555 171.1 ? 11 OD1 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5024 ? 1_555 91.5 ? 12 O1P ? D U5P . ? A U5P 2000 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5024 ? 1_555 109.3 ? 13 O3P ? D U5P . ? A U5P 2000 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5024 ? 1_555 170.6 ? 14 O ? I HOH . ? A HOH 5002 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5024 ? 1_555 86.5 ? 15 O ? I HOH . ? A HOH 5012 ? 1_555 MN ? B MN . ? A MN 3000 ? 1_555 O ? I HOH . ? A HOH 5024 ? 1_555 91.9 ? 16 OD2 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 OE2 ? A GLU 17 ? A GLU 14 ? 1_555 98.4 ? 17 OD2 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 OD2 ? A ASP 170 ? A ASP 167 ? 1_555 98.8 ? 18 OE2 ? A GLU 17 ? A GLU 14 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 OD2 ? A ASP 170 ? A ASP 167 ? 1_555 113.3 ? 19 OD2 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 O3P ? D U5P . ? A U5P 2000 ? 1_555 104.6 ? 20 OE2 ? A GLU 17 ? A GLU 14 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 O3P ? D U5P . ? A U5P 2000 ? 1_555 120.0 ? 21 OD2 ? A ASP 170 ? A ASP 167 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 O3P ? D U5P . ? A U5P 2000 ? 1_555 116.7 ? 22 OD2 ? A ASP 15 ? A ASP 12 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 O ? I HOH . ? A HOH 5100 ? 1_555 175.4 ? 23 OE2 ? A GLU 17 ? A GLU 14 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 O ? I HOH . ? A HOH 5100 ? 1_555 79.2 ? 24 OD2 ? A ASP 170 ? A ASP 167 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 O ? I HOH . ? A HOH 5100 ? 1_555 85.8 ? 25 O3P ? D U5P . ? A U5P 2000 ? 1_555 MN ? C MN . ? A MN 3001 ? 1_555 O ? I HOH . ? A HOH 5100 ? 1_555 73.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-13 2 'Structure model' 1 1 2008-04-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.value' 27 5 'Structure model' '_struct_conn.pdbx_dist_value' 28 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The protein is a cyclized form of N-terminal domain of epsilon (residue 2-186). The cyclized protein includes 9 amino acid linker, SIEF at the N-terminal and TRESG at the C-terminus ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 99 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 75.13 _pdbx_validate_torsion.psi 57.21 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 42 ? CG ? A ARG 45 CG 2 1 Y 1 A ARG 42 ? CD ? A ARG 45 CD 3 1 Y 1 A ARG 42 ? NE ? A ARG 45 NE 4 1 Y 1 A ARG 42 ? CZ ? A ARG 45 CZ 5 1 Y 1 A ARG 42 ? NH1 ? A ARG 45 NH1 6 1 Y 1 A ARG 42 ? NH2 ? A ARG 45 NH2 7 1 Y 1 A ASP 55 ? CG ? A ASP 58 CG 8 1 Y 1 A ASP 55 ? OD1 ? A ASP 58 OD1 9 1 Y 1 A ASP 55 ? OD2 ? A ASP 58 OD2 10 1 Y 1 A GLU 71 ? CG ? A GLU 74 CG 11 1 Y 1 A GLU 71 ? CD ? A GLU 74 CD 12 1 Y 1 A GLU 71 ? OE1 ? A GLU 74 OE1 13 1 Y 1 A GLU 71 ? OE2 ? A GLU 74 OE2 14 1 Y 1 A LYS 115 ? CG ? A LYS 118 CG 15 1 Y 1 A LYS 115 ? CD ? A LYS 118 CD 16 1 Y 1 A LYS 115 ? CE ? A LYS 118 CE 17 1 Y 1 A LYS 115 ? NZ ? A LYS 118 NZ 18 1 Y 1 A LYS 158 ? CG ? A LYS 161 CG 19 1 Y 1 A LYS 158 ? CD ? A LYS 161 CD 20 1 Y 1 A LYS 158 ? CE ? A LYS 161 CE 21 1 Y 1 A LYS 158 ? NZ ? A LYS 161 NZ 22 1 N 1 A U5P 2000 ? O4 ? D U5P 1 O4 23 1 N 1 A U5P 2100 ? N1 ? E U5P 1 N1 24 1 N 1 A U5P 2100 ? C2 ? E U5P 1 C2 25 1 N 1 A U5P 2100 ? N3 ? E U5P 1 N3 26 1 N 1 A U5P 2100 ? C4 ? E U5P 1 C4 27 1 N 1 A U5P 2100 ? C5 ? E U5P 1 C5 28 1 N 1 A U5P 2100 ? C6 ? E U5P 1 C6 29 1 N 1 A U5P 2100 ? O2 ? E U5P 1 O2 30 1 N 1 A U5P 2100 ? O4 ? E U5P 1 O4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ILE -1 ? A ILE 2 3 1 Y 1 A GLU 0 ? A GLU 3 4 1 Y 1 A PHE 1 ? A PHE 4 5 1 Y 1 A SER 2 ? A SER 5 6 1 Y 1 A THR 3 ? A THR 6 7 1 Y 1 A ALA 4 ? A ALA 7 8 1 Y 1 A GLY 181 ? A GLY 184 9 1 Y 1 A GLN 182 ? A GLN 185 10 1 Y 1 A THR 183 ? A THR 186 11 1 Y 1 A SER 184 ? A SER 187 12 1 Y 1 A MET 185 ? A MET 188 13 1 Y 1 A ALA 186 ? A ALA 189 14 1 Y 1 A THR 187 ? A THR 190 15 1 Y 1 A ARG 188 ? A ARG 191 16 1 Y 1 A GLU 189 ? A GLU 192 17 1 Y 1 A SER 190 ? A SER 193 18 1 Y 1 A GLY 191 ? A GLY 194 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 MN MN MN N N 260 PEG C1 C N N 261 PEG O1 O N N 262 PEG C2 C N N 263 PEG O2 O N N 264 PEG C3 C N N 265 PEG C4 C N N 266 PEG O4 O N N 267 PEG H11 H N N 268 PEG H12 H N N 269 PEG HO1 H N N 270 PEG H21 H N N 271 PEG H22 H N N 272 PEG H31 H N N 273 PEG H32 H N N 274 PEG H41 H N N 275 PEG H42 H N N 276 PEG HO4 H N N 277 PHE N N N N 278 PHE CA C N S 279 PHE C C N N 280 PHE O O N N 281 PHE CB C N N 282 PHE CG C Y N 283 PHE CD1 C Y N 284 PHE CD2 C Y N 285 PHE CE1 C Y N 286 PHE CE2 C Y N 287 PHE CZ C Y N 288 PHE OXT O N N 289 PHE H H N N 290 PHE H2 H N N 291 PHE HA H N N 292 PHE HB2 H N N 293 PHE HB3 H N N 294 PHE HD1 H N N 295 PHE HD2 H N N 296 PHE HE1 H N N 297 PHE HE2 H N N 298 PHE HZ H N N 299 PHE HXT H N N 300 PRO N N N N 301 PRO CA C N S 302 PRO C C N N 303 PRO O O N N 304 PRO CB C N N 305 PRO CG C N N 306 PRO CD C N N 307 PRO OXT O N N 308 PRO H H N N 309 PRO HA H N N 310 PRO HB2 H N N 311 PRO HB3 H N N 312 PRO HG2 H N N 313 PRO HG3 H N N 314 PRO HD2 H N N 315 PRO HD3 H N N 316 PRO HXT H N N 317 SER N N N N 318 SER CA C N S 319 SER C C N N 320 SER O O N N 321 SER CB C N N 322 SER OG O N N 323 SER OXT O N N 324 SER H H N N 325 SER H2 H N N 326 SER HA H N N 327 SER HB2 H N N 328 SER HB3 H N N 329 SER HG H N N 330 SER HXT H N N 331 THR N N N N 332 THR CA C N S 333 THR C C N N 334 THR O O N N 335 THR CB C N R 336 THR OG1 O N N 337 THR CG2 C N N 338 THR OXT O N N 339 THR H H N N 340 THR H2 H N N 341 THR HA H N N 342 THR HB H N N 343 THR HG1 H N N 344 THR HG21 H N N 345 THR HG22 H N N 346 THR HG23 H N N 347 THR HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 U5P N1 N N N 373 U5P C2 C N N 374 U5P N3 N N N 375 U5P C4 C N N 376 U5P C5 C N N 377 U5P C6 C N N 378 U5P O2 O N N 379 U5P O4 O N N 380 U5P "C1'" C N R 381 U5P "C2'" C N R 382 U5P "O2'" O N N 383 U5P "C3'" C N S 384 U5P "C4'" C N R 385 U5P "O3'" O N N 386 U5P "O4'" O N N 387 U5P "C5'" C N N 388 U5P "O5'" O N N 389 U5P P P N N 390 U5P O1P O N N 391 U5P O2P O N N 392 U5P O3P O N N 393 U5P HN3 H N N 394 U5P H5 H N N 395 U5P H6 H N N 396 U5P "H1'" H N N 397 U5P "H2'" H N N 398 U5P "HO2'" H N N 399 U5P "H3'" H N N 400 U5P "H4'" H N N 401 U5P "HO3'" H N N 402 U5P "H5'1" H N N 403 U5P "H5'2" H N N 404 U5P HOP2 H N N 405 U5P HOP3 H N N 406 VAL N N N N 407 VAL CA C N S 408 VAL C C N N 409 VAL O O N N 410 VAL CB C N N 411 VAL CG1 C N N 412 VAL CG2 C N N 413 VAL OXT O N N 414 VAL H H N N 415 VAL H2 H N N 416 VAL HA H N N 417 VAL HB H N N 418 VAL HG11 H N N 419 VAL HG12 H N N 420 VAL HG13 H N N 421 VAL HG21 H N N 422 VAL HG22 H N N 423 VAL HG23 H N N 424 VAL HXT H N N 425 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PEG C1 O1 sing N N 246 PEG C1 C2 sing N N 247 PEG C1 H11 sing N N 248 PEG C1 H12 sing N N 249 PEG O1 HO1 sing N N 250 PEG C2 O2 sing N N 251 PEG C2 H21 sing N N 252 PEG C2 H22 sing N N 253 PEG O2 C3 sing N N 254 PEG C3 C4 sing N N 255 PEG C3 H31 sing N N 256 PEG C3 H32 sing N N 257 PEG C4 O4 sing N N 258 PEG C4 H41 sing N N 259 PEG C4 H42 sing N N 260 PEG O4 HO4 sing N N 261 PHE N CA sing N N 262 PHE N H sing N N 263 PHE N H2 sing N N 264 PHE CA C sing N N 265 PHE CA CB sing N N 266 PHE CA HA sing N N 267 PHE C O doub N N 268 PHE C OXT sing N N 269 PHE CB CG sing N N 270 PHE CB HB2 sing N N 271 PHE CB HB3 sing N N 272 PHE CG CD1 doub Y N 273 PHE CG CD2 sing Y N 274 PHE CD1 CE1 sing Y N 275 PHE CD1 HD1 sing N N 276 PHE CD2 CE2 doub Y N 277 PHE CD2 HD2 sing N N 278 PHE CE1 CZ doub Y N 279 PHE CE1 HE1 sing N N 280 PHE CE2 CZ sing Y N 281 PHE CE2 HE2 sing N N 282 PHE CZ HZ sing N N 283 PHE OXT HXT sing N N 284 PRO N CA sing N N 285 PRO N CD sing N N 286 PRO N H sing N N 287 PRO CA C sing N N 288 PRO CA CB sing N N 289 PRO CA HA sing N N 290 PRO C O doub N N 291 PRO C OXT sing N N 292 PRO CB CG sing N N 293 PRO CB HB2 sing N N 294 PRO CB HB3 sing N N 295 PRO CG CD sing N N 296 PRO CG HG2 sing N N 297 PRO CG HG3 sing N N 298 PRO CD HD2 sing N N 299 PRO CD HD3 sing N N 300 PRO OXT HXT sing N N 301 SER N CA sing N N 302 SER N H sing N N 303 SER N H2 sing N N 304 SER CA C sing N N 305 SER CA CB sing N N 306 SER CA HA sing N N 307 SER C O doub N N 308 SER C OXT sing N N 309 SER CB OG sing N N 310 SER CB HB2 sing N N 311 SER CB HB3 sing N N 312 SER OG HG sing N N 313 SER OXT HXT sing N N 314 THR N CA sing N N 315 THR N H sing N N 316 THR N H2 sing N N 317 THR CA C sing N N 318 THR CA CB sing N N 319 THR CA HA sing N N 320 THR C O doub N N 321 THR C OXT sing N N 322 THR CB OG1 sing N N 323 THR CB CG2 sing N N 324 THR CB HB sing N N 325 THR OG1 HG1 sing N N 326 THR CG2 HG21 sing N N 327 THR CG2 HG22 sing N N 328 THR CG2 HG23 sing N N 329 THR OXT HXT sing N N 330 TYR N CA sing N N 331 TYR N H sing N N 332 TYR N H2 sing N N 333 TYR CA C sing N N 334 TYR CA CB sing N N 335 TYR CA HA sing N N 336 TYR C O doub N N 337 TYR C OXT sing N N 338 TYR CB CG sing N N 339 TYR CB HB2 sing N N 340 TYR CB HB3 sing N N 341 TYR CG CD1 doub Y N 342 TYR CG CD2 sing Y N 343 TYR CD1 CE1 sing Y N 344 TYR CD1 HD1 sing N N 345 TYR CD2 CE2 doub Y N 346 TYR CD2 HD2 sing N N 347 TYR CE1 CZ doub Y N 348 TYR CE1 HE1 sing N N 349 TYR CE2 CZ sing Y N 350 TYR CE2 HE2 sing N N 351 TYR CZ OH sing N N 352 TYR OH HH sing N N 353 TYR OXT HXT sing N N 354 U5P N1 C2 sing N N 355 U5P N1 C6 sing N N 356 U5P N1 "C1'" sing N N 357 U5P C2 N3 sing N N 358 U5P C2 O2 doub N N 359 U5P N3 C4 sing N N 360 U5P N3 HN3 sing N N 361 U5P C4 C5 sing N N 362 U5P C4 O4 doub N N 363 U5P C5 C6 doub N N 364 U5P C5 H5 sing N N 365 U5P C6 H6 sing N N 366 U5P "C1'" "C2'" sing N N 367 U5P "C1'" "O4'" sing N N 368 U5P "C1'" "H1'" sing N N 369 U5P "C2'" "O2'" sing N N 370 U5P "C2'" "C3'" sing N N 371 U5P "C2'" "H2'" sing N N 372 U5P "O2'" "HO2'" sing N N 373 U5P "C3'" "C4'" sing N N 374 U5P "C3'" "O3'" sing N N 375 U5P "C3'" "H3'" sing N N 376 U5P "C4'" "O4'" sing N N 377 U5P "C4'" "C5'" sing N N 378 U5P "C4'" "H4'" sing N N 379 U5P "O3'" "HO3'" sing N N 380 U5P "C5'" "O5'" sing N N 381 U5P "C5'" "H5'1" sing N N 382 U5P "C5'" "H5'2" sing N N 383 U5P "O5'" P sing N N 384 U5P P O1P doub N N 385 U5P P O2P sing N N 386 U5P P O3P sing N N 387 U5P O2P HOP2 sing N N 388 U5P O3P HOP3 sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 "URIDINE-5'-MONOPHOSPHATE" U5P 4 1,2-ETHANEDIOL EDO 5 'DI(HYDROXYETHYL)ETHER' PEG 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J53 _pdbx_initial_refinement_model.details 'PDB entry 1J53' #