HEADER TRANSFERASE 01-MAY-06 2GUP TITLE STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A ROK FAMILY PROTEIN TITLE 2 FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH SUCROSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROK FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS SUGAR KINASE, ROK FAMILY, STREPTOCOCCUS PNEUMONIAE TIGR4, APC80695, KEYWDS 2 SUCROSE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,H.LI,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 5 20-NOV-24 2GUP 1 HETSYN REVDAT 4 29-JUL-20 2GUP 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 13-JUL-11 2GUP 1 VERSN REVDAT 2 24-FEB-09 2GUP 1 VERSN REVDAT 1 30-MAY-06 2GUP 0 JRNL AUTH K.TAN,H.LI,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A ROK FAMILY PROTEIN FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH SUCROSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 21779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2336 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3187 ; 2.288 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 6.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;38.377 ;25.481 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;16.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;27.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1732 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 974 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1603 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 1.713 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2282 ; 2.528 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1009 ; 4.198 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 905 ; 5.828 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 19.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG-8000, 0.1M MGCL2, 0.1M REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.83850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.83850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.33250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.33250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.83850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.33250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.83850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.33250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IT IS A DIMER, WHICH CAN BE FORMED FROM THE TWO MONOMERS REMARK 300 WITH THE SYMMETRY OPERATIONS OF (X,Y,Z) AND (-X,Y,1/2-Z). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.83850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 14 CB LYS A 14 CG 0.164 REMARK 500 VAL A 69 CB VAL A 69 CG1 0.141 REMARK 500 TRP A 84 CB TRP A 84 CG 0.112 REMARK 500 VAL A 122 CB VAL A 122 CG1 0.136 REMARK 500 GLU A 178 CG GLU A 178 CD 0.093 REMARK 500 TYR A 269 CD1 TYR A 269 CE1 0.135 REMARK 500 TYR A 276 CD1 TYR A 276 CE1 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 97 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 LEU A 97 CB - CG - CD2 ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU A 110 CB - CG - CD2 ANGL. DEV. = -13.9 DEGREES REMARK 500 LEU A 137 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP A 253 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 76 77.97 -119.21 REMARK 500 GLU A 116 -63.52 -106.86 REMARK 500 ASN A 134 57.26 32.75 REMARK 500 ALA A 157 -124.68 -146.46 REMARK 500 ASN A 198 107.87 -57.71 REMARK 500 THR A 259 -73.70 -111.52 REMARK 500 HIS A 270 -64.51 -146.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80695 RELATED DB: TARGETDB DBREF 2GUP A 1 289 GB 14973654 AAK76199 1 289 SEQADV 2GUP SER A -2 GB 14973654 CLONING ARTIFACT SEQADV 2GUP ASN A -1 GB 14973654 CLONING ARTIFACT SEQADV 2GUP ALA A 0 GB 14973654 CLONING ARTIFACT SEQADV 2GUP MSE A 1 GB 14973654 MET 1 MODIFIED RESIDUE SEQADV 2GUP MSE A 57 GB 14973654 MET 57 MODIFIED RESIDUE SEQADV 2GUP MSE A 131 GB 14973654 MET 131 MODIFIED RESIDUE SEQADV 2GUP MSE A 151 GB 14973654 MET 151 MODIFIED RESIDUE SEQADV 2GUP MSE A 172 GB 14973654 MET 172 MODIFIED RESIDUE SEQADV 2GUP MSE A 208 GB 14973654 MET 208 MODIFIED RESIDUE SEQRES 1 A 292 SER ASN ALA MSE THR ILE ALA THR ILE ASP ILE GLY GLY SEQRES 2 A 292 THR GLY ILE LYS PHE ALA SER LEU THR PRO ASP GLY LYS SEQRES 3 A 292 ILE LEU ASP LYS THR SER ILE SER THR PRO GLU ASN LEU SEQRES 4 A 292 GLU ASP LEU LEU ALA TRP LEU ASP GLN ARG LEU SER GLU SEQRES 5 A 292 GLN ASP TYR SER GLY ILE ALA MSE SER VAL PRO GLY ALA SEQRES 6 A 292 VAL ASN GLN GLU THR GLY VAL ILE ASP GLY PHE SER ALA SEQRES 7 A 292 VAL PRO TYR ILE HIS GLY PHE SER TRP TYR GLU ALA LEU SEQRES 8 A 292 SER SER TYR GLN LEU PRO VAL HIS LEU GLU ASN ASP ALA SEQRES 9 A 292 ASN CYS VAL GLY LEU SER GLU LEU LEU ALA HIS PRO GLU SEQRES 10 A 292 LEU GLU ASN ALA ALA CYS VAL VAL ILE GLY THR GLY ILE SEQRES 11 A 292 GLY GLY ALA MSE ILE ILE ASN GLY ARG LEU HIS ARG GLY SEQRES 12 A 292 ARG HIS GLY LEU GLY GLY GLU PHE GLY TYR MSE THR THR SEQRES 13 A 292 LEU ALA PRO ALA GLU LYS LEU ASN ASN TRP SER GLN LEU SEQRES 14 A 292 ALA SER THR GLY ASN MSE VAL ARG TYR VAL ILE GLU LYS SEQRES 15 A 292 SER GLY HIS THR ASP TRP ASP GLY ARG LYS ILE TYR GLN SEQRES 16 A 292 GLU ALA ALA ALA GLY ASN ILE LEU CYS GLN GLU ALA ILE SEQRES 17 A 292 GLU ARG MSE ASN ARG ASN LEU ALA GLN GLY LEU LEU ASN SEQRES 18 A 292 ILE GLN TYR LEU ILE ASP PRO GLY VAL ILE SER LEU GLY SEQRES 19 A 292 GLY SER ILE SER GLN ASN PRO ASP PHE ILE GLN GLY VAL SEQRES 20 A 292 LYS LYS ALA VAL GLU ASP PHE VAL ASP ALA TYR GLU GLU SEQRES 21 A 292 TYR THR VAL ALA PRO VAL ILE GLN ALA CYS THR TYR HIS SEQRES 22 A 292 ALA ASP ALA ASN LEU TYR GLY ALA LEU VAL ASN TRP LEU SEQRES 23 A 292 GLN GLU GLU LYS GLN TRP MODRES 2GUP MSE A 1 MET SELENOMETHIONINE MODRES 2GUP MSE A 57 MET SELENOMETHIONINE MODRES 2GUP MSE A 131 MET SELENOMETHIONINE MODRES 2GUP MSE A 151 MET SELENOMETHIONINE MODRES 2GUP MSE A 172 MET SELENOMETHIONINE MODRES 2GUP MSE A 208 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 57 8 HET MSE A 131 8 HET MSE A 151 8 HET MSE A 172 8 HET MSE A 208 8 HET GLC B 1 11 HET FRU B 2 12 HET GLC C 1 11 HET FRU C 2 12 HET GLC D 1 11 HET FRU D 2 12 HET TRS A 293 8 HETNAM MSE SELENOMETHIONINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN TRS TRIS BUFFER FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 GLC 3(C6 H12 O6) FORMUL 2 FRU 3(C6 H12 O6) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *84(H2 O) HELIX 1 1 ASN A 35 SER A 48 1 14 HELIX 2 2 VAL A 76 HIS A 80 5 5 HELIX 3 3 SER A 83 LEU A 88 1 6 HELIX 4 4 SER A 89 GLN A 92 5 4 HELIX 5 5 ASP A 100 HIS A 112 1 13 HELIX 6 6 GLU A 147 MSE A 151 5 5 HELIX 7 7 ASN A 162 SER A 168 1 7 HELIX 8 8 SER A 168 GLY A 181 1 14 HELIX 9 9 ASP A 186 ALA A 196 1 11 HELIX 10 10 ASN A 198 ASP A 224 1 27 HELIX 11 11 GLY A 232 GLN A 236 5 5 HELIX 12 12 ASN A 237 TYR A 255 1 19 HELIX 13 13 ASP A 272 GLU A 286 1 15 SHEET 1 A 5 ILE A 24 ILE A 30 0 SHEET 2 A 5 GLY A 12 LEU A 18 -1 N SER A 17 O LEU A 25 SHEET 3 A 5 ILE A 3 GLY A 9 -1 N THR A 5 O ALA A 16 SHEET 4 A 5 GLY A 54 VAL A 59 1 O SER A 58 N ILE A 6 SHEET 5 A 5 VAL A 95 ASN A 99 1 O GLU A 98 N VAL A 59 SHEET 1 B 2 ALA A 62 VAL A 63 0 SHEET 2 B 2 ILE A 70 ASP A 71 -1 O ASP A 71 N ALA A 62 SHEET 1 C 5 ARG A 136 HIS A 138 0 SHEET 2 C 5 ILE A 127 ILE A 133 -1 N ILE A 133 O ARG A 136 SHEET 3 C 5 ALA A 118 ILE A 123 -1 N VAL A 122 O GLY A 128 SHEET 4 C 5 VAL A 227 GLY A 231 1 O GLY A 231 N VAL A 121 SHEET 5 C 5 ILE A 264 ALA A 266 1 O GLN A 265 N LEU A 230 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C ALA A 56 N MSE A 57 1555 1555 1.34 LINK C MSE A 57 N SER A 58 1555 1555 1.31 LINK C ALA A 130 N MSE A 131 1555 1555 1.32 LINK C MSE A 131 N ILE A 132 1555 1555 1.34 LINK C TYR A 150 N MSE A 151 1555 1555 1.32 LINK C MSE A 151 N THR A 152 1555 1555 1.31 LINK C ASN A 171 N MSE A 172 1555 1555 1.34 LINK C MSE A 172 N VAL A 173 1555 1555 1.34 LINK C ARG A 207 N MSE A 208 1555 1555 1.32 LINK C MSE A 208 N ASN A 209 1555 1555 1.33 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.46 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.44 LINK C1 GLC D 1 O2 FRU D 2 1555 1555 1.43 CRYST1 54.678 114.665 117.677 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008498 0.00000 HETATM 1 N MSE A 1 11.732 8.043 5.267 1.00 59.04 N HETATM 2 CA MSE A 1 10.584 8.993 5.486 1.00 60.08 C HETATM 3 C MSE A 1 10.968 10.427 5.059 1.00 57.50 C HETATM 4 O MSE A 1 11.980 11.007 5.535 1.00 57.89 O HETATM 5 CB MSE A 1 10.130 9.012 6.941 1.00 59.98 C HETATM 6 CG MSE A 1 8.698 9.454 7.133 1.00 61.04 C HETATM 7 SE MSE A 1 7.999 9.401 9.001 0.55 69.22 SE HETATM 8 CE MSE A 1 6.231 8.536 8.736 1.00 66.19 C