data_2GUX # _entry.id 2GUX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2GUX RCSB RCSB037579 WWPDB D_1000037579 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2GTY . unspecified PDB 2GUC . unspecified PDB 2GUD . unspecified PDB 2GUE . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GUX _pdbx_database_status.recvd_initial_deposition_date 2006-05-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ziolkowska, N.E.' 1 'Wlodawer, A.' 2 # _citation.id primary _citation.title 'Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding.' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1127 _citation.page_last 1135 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16843894 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.05.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ziolkowska, N.E.' 1 primary ;O'keefe, B.R. ; 2 primary 'Mori, T.' 3 primary 'Zhu, C.' 4 primary 'Giomarelli, B.' 5 primary 'Vojdani, F.' 6 primary 'Palmer, K.E.' 7 primary 'McMahon, J.B.' 8 primary 'Wlodawer, A.' 9 # _cell.entry_id 2GUX _cell.length_a 66.87 _cell.length_b 66.87 _cell.length_c 68.20 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GUX _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man griffithsin 14609.539 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GRFT # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSHHHHHHSSGLVPRGSLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISN (MSE)TIRSGDYIDNISFETN(MSE)GRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSHHHHHHSSGLVPRGSLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTI RSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 SER n 1 11 SER n 1 12 GLY n 1 13 LEU n 1 14 VAL n 1 15 PRO n 1 16 ARG n 1 17 GLY n 1 18 SER n 1 19 LEU n 1 20 THR n 1 21 HIS n 1 22 ARG n 1 23 LYS n 1 24 PHE n 1 25 GLY n 1 26 GLY n 1 27 SER n 1 28 GLY n 1 29 GLY n 1 30 SER n 1 31 PRO n 1 32 PHE n 1 33 SER n 1 34 GLY n 1 35 LEU n 1 36 SER n 1 37 SER n 1 38 ILE n 1 39 ALA n 1 40 VAL n 1 41 ARG n 1 42 SER n 1 43 GLY n 1 44 SER n 1 45 TYR n 1 46 LEU n 1 47 ASP n 1 48 ALA n 1 49 ILE n 1 50 ILE n 1 51 ILE n 1 52 ASP n 1 53 GLY n 1 54 VAL n 1 55 HIS n 1 56 HIS n 1 57 GLY n 1 58 GLY n 1 59 SER n 1 60 GLY n 1 61 GLY n 1 62 ASN n 1 63 LEU n 1 64 SER n 1 65 PRO n 1 66 THR n 1 67 PHE n 1 68 THR n 1 69 PHE n 1 70 GLY n 1 71 SER n 1 72 GLY n 1 73 GLU n 1 74 TYR n 1 75 ILE n 1 76 SER n 1 77 ASN n 1 78 MSE n 1 79 THR n 1 80 ILE n 1 81 ARG n 1 82 SER n 1 83 GLY n 1 84 ASP n 1 85 TYR n 1 86 ILE n 1 87 ASP n 1 88 ASN n 1 89 ILE n 1 90 SER n 1 91 PHE n 1 92 GLU n 1 93 THR n 1 94 ASN n 1 95 MSE n 1 96 GLY n 1 97 ARG n 1 98 ARG n 1 99 PHE n 1 100 GLY n 1 101 PRO n 1 102 TYR n 1 103 GLY n 1 104 GLY n 1 105 SER n 1 106 GLY n 1 107 GLY n 1 108 SER n 1 109 ALA n 1 110 ASN n 1 111 THR n 1 112 LEU n 1 113 SER n 1 114 ASN n 1 115 VAL n 1 116 LYS n 1 117 VAL n 1 118 ILE n 1 119 GLN n 1 120 ILE n 1 121 ASN n 1 122 GLY n 1 123 SER n 1 124 ALA n 1 125 GLY n 1 126 ASP n 1 127 TYR n 1 128 LEU n 1 129 ASP n 1 130 SER n 1 131 LEU n 1 132 ASP n 1 133 ILE n 1 134 TYR n 1 135 TYR n 1 136 GLU n 1 137 GLN n 1 138 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Griffithsia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Griffithsia _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35158 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRFIN_GRISQ _struct_ref.pdbx_db_accession P84801 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GUX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 18 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P84801 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GUX GLY A 1 ? UNP P84801 ? ? 'CLONING ARTIFACT' -16 1 1 2GUX SER A 2 ? UNP P84801 ? ? 'CLONING ARTIFACT' -15 2 1 2GUX SER A 3 ? UNP P84801 ? ? 'CLONING ARTIFACT' -14 3 1 2GUX HIS A 4 ? UNP P84801 ? ? 'EXPRESSION TAG' -13 4 1 2GUX HIS A 5 ? UNP P84801 ? ? 'EXPRESSION TAG' -12 5 1 2GUX HIS A 6 ? UNP P84801 ? ? 'EXPRESSION TAG' -11 6 1 2GUX HIS A 7 ? UNP P84801 ? ? 'EXPRESSION TAG' -10 7 1 2GUX HIS A 8 ? UNP P84801 ? ? 'EXPRESSION TAG' -9 8 1 2GUX HIS A 9 ? UNP P84801 ? ? 'EXPRESSION TAG' -8 9 1 2GUX SER A 10 ? UNP P84801 ? ? 'CLONING ARTIFACT' -7 10 1 2GUX SER A 11 ? UNP P84801 ? ? 'CLONING ARTIFACT' -6 11 1 2GUX GLY A 12 ? UNP P84801 ? ? 'CLONING ARTIFACT' -5 12 1 2GUX LEU A 13 ? UNP P84801 ? ? 'CLONING ARTIFACT' -4 13 1 2GUX VAL A 14 ? UNP P84801 ? ? 'CLONING ARTIFACT' -3 14 1 2GUX PRO A 15 ? UNP P84801 ? ? 'CLONING ARTIFACT' -2 15 1 2GUX ARG A 16 ? UNP P84801 ? ? 'CLONING ARTIFACT' -1 16 1 2GUX GLY A 17 ? UNP P84801 ? ? 'CLONING ARTIFACT' 0 17 1 2GUX MSE A 78 ? UNP P84801 MET 61 'MODIFIED RESIDUE' 61 18 1 2GUX MSE A 95 ? UNP P84801 MET 78 'MODIFIED RESIDUE' 78 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2GUX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_percent_sol 62.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_details '0.2M ammonium sulfate, 30% PEG 4000, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2005-11-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97926 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97926 # _reflns.entry_id 2GUX _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 12271 _reflns.number_all 12271 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.032 _reflns.pdbx_netI_over_sigmaI 33.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 66.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2GUX _refine.ls_number_reflns_obs 11942 _refine.ls_number_reflns_all 11942 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.31 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 97.33 _refine.ls_R_factor_obs 0.1889 _refine.ls_R_factor_all 0.1889 _refine.ls_R_factor_R_work 0.1889 _refine.ls_R_factor_R_free 0.2541 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 568 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 52.126 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.144 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.080 _refine.overall_SU_B 4.623 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 929 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1058 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 19.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.021 ? 967 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.875 1.954 ? 1305 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.312 5.000 ? 125 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.274 23.182 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.161 15.000 ? 143 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.447 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.140 0.200 ? 132 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 762 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.205 0.200 ? 379 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 638 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.905 0.200 ? 87 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.201 0.200 ? 81 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.253 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.181 1.500 ? 632 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.719 2.000 ? 968 'X-RAY DIFFRACTION' ? r_scbond_it 3.137 3.000 ? 392 'X-RAY DIFFRACTION' ? r_scangle_it 4.186 4.500 ? 337 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 646 _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.percent_reflns_obs 74.17 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GUX _struct.title 'Selenomethionine derivative of griffithsin' _struct.pdbx_descriptor griffithsin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GUX _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'griffithsin, lectins, domain swapping, mannose binding, HIV, SARS, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 77 C ? ? ? 1_555 A MSE 78 N ? ? A ASN 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale ? ? A MSE 78 C ? ? ? 1_555 A THR 79 N ? ? A MSE 61 A THR 62 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A ASN 94 C ? ? ? 1_555 A MSE 95 N ? ? A ASN 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale ? ? A MSE 95 C ? ? ? 1_555 A GLY 96 N ? ? A MSE 78 A GLY 79 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 100 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 83 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 101 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 84 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 54 ? GLY A 57 ? VAL A 37 GLY A 40 A 2 LEU A 46 ? ILE A 51 ? LEU A 29 ILE A 34 A 3 SER A 37 ? SER A 42 ? SER A 20 SER A 25 A 4 ASN A 62 ? LEU A 63 ? ASN A 45 LEU A 46 B 1 VAL A 54 ? GLY A 57 ? VAL A 37 GLY A 40 B 2 LEU A 46 ? ILE A 51 ? LEU A 29 ILE A 34 B 3 SER A 37 ? SER A 42 ? SER A 20 SER A 25 B 4 PHE A 67 ? THR A 68 ? PHE A 50 THR A 51 C 1 ARG A 98 ? GLY A 103 ? ARG A 81 GLY A 86 C 2 ILE A 86 ? THR A 93 ? ILE A 69 THR A 76 C 3 ILE A 75 ? SER A 82 ? ILE A 58 SER A 65 C 4 SER A 108 ? SER A 113 ? SER A 91 SER A 96 D 1 VAL A 115 ? ALA A 124 ? VAL A 98 ALA A 107 D 2 LEU A 128 ? GLN A 137 ? LEU A 111 GLN A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 56 ? O HIS A 39 N ILE A 49 ? N ILE A 32 A 2 3 O ILE A 50 ? O ILE A 33 N ALA A 39 ? N ALA A 22 A 3 4 N SER A 42 ? N SER A 25 O ASN A 62 ? O ASN A 45 B 1 2 O HIS A 56 ? O HIS A 39 N ILE A 49 ? N ILE A 32 B 2 3 O ILE A 50 ? O ILE A 33 N ALA A 39 ? N ALA A 22 B 3 4 N ILE A 38 ? N ILE A 21 O PHE A 67 ? O PHE A 50 C 1 2 O PHE A 99 ? O PHE A 82 N PHE A 91 ? N PHE A 74 C 2 3 O ASP A 87 ? O ASP A 70 N ARG A 81 ? N ARG A 64 C 3 4 N MSE A 78 ? N MSE A 61 O LEU A 112 ? O LEU A 95 D 1 2 N ASN A 121 ? N ASN A 104 O ASP A 132 ? O ASP A 115 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 137' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TYR A 85 ? TYR A 68 . ? 1_555 ? 2 AC1 6 GLY A 125 ? GLY A 108 . ? 1_555 ? 3 AC1 6 ASP A 126 ? ASP A 109 . ? 1_555 ? 4 AC1 6 TYR A 127 ? TYR A 110 . ? 1_555 ? 5 AC1 6 ASP A 129 ? ASP A 112 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 162 . ? 6_664 ? # _database_PDB_matrix.entry_id 2GUX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GUX _atom_sites.fract_transf_matrix[1][1] 0.014953 _atom_sites.fract_transf_matrix[1][2] 0.008633 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017267 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014662 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -16 ? ? ? A . n A 1 2 SER 2 -15 ? ? ? A . n A 1 3 SER 3 -14 ? ? ? A . n A 1 4 HIS 4 -13 ? ? ? A . n A 1 5 HIS 5 -12 ? ? ? A . n A 1 6 HIS 6 -11 ? ? ? A . n A 1 7 HIS 7 -10 ? ? ? A . n A 1 8 HIS 8 -9 ? ? ? A . n A 1 9 HIS 9 -8 ? ? ? A . n A 1 10 SER 10 -7 ? ? ? A . n A 1 11 SER 11 -6 ? ? ? A . n A 1 12 GLY 12 -5 ? ? ? A . n A 1 13 LEU 13 -4 -4 LEU GLY A . n A 1 14 VAL 14 -3 -3 VAL VAL A . n A 1 15 PRO 15 -2 -2 PRO PRO A . n A 1 16 ARG 16 -1 -1 ARG ARG A . n A 1 17 GLY 17 0 0 GLY GLY A . n A 1 18 SER 18 1 1 SER SER A . n A 1 19 LEU 19 2 2 LEU LEU A . n A 1 20 THR 20 3 3 THR THR A . n A 1 21 HIS 21 4 4 HIS HIS A . n A 1 22 ARG 22 5 5 ARG ARG A . n A 1 23 LYS 23 6 6 LYS LYS A . n A 1 24 PHE 24 7 7 PHE PHE A . n A 1 25 GLY 25 8 8 GLY GLY A . n A 1 26 GLY 26 9 9 GLY GLY A . n A 1 27 SER 27 10 10 SER SER A . n A 1 28 GLY 28 11 11 GLY GLY A . n A 1 29 GLY 29 12 12 GLY GLY A . n A 1 30 SER 30 13 13 SER SER A . n A 1 31 PRO 31 14 14 PRO PRO A . n A 1 32 PHE 32 15 15 PHE PHE A . n A 1 33 SER 33 16 16 SER SER A . n A 1 34 GLY 34 17 17 GLY GLY A . n A 1 35 LEU 35 18 18 LEU LEU A . n A 1 36 SER 36 19 19 SER SER A . n A 1 37 SER 37 20 20 SER SER A . n A 1 38 ILE 38 21 21 ILE ILE A . n A 1 39 ALA 39 22 22 ALA ALA A . n A 1 40 VAL 40 23 23 VAL VAL A . n A 1 41 ARG 41 24 24 ARG ARG A . n A 1 42 SER 42 25 25 SER SER A . n A 1 43 GLY 43 26 26 GLY GLY A . n A 1 44 SER 44 27 27 SER SER A . n A 1 45 TYR 45 28 28 TYR TYR A . n A 1 46 LEU 46 29 29 LEU LEU A . n A 1 47 ASP 47 30 30 ASP ASP A . n A 1 48 ALA 48 31 31 ALA ALA A . n A 1 49 ILE 49 32 32 ILE ILE A . n A 1 50 ILE 50 33 33 ILE ILE A . n A 1 51 ILE 51 34 34 ILE ILE A . n A 1 52 ASP 52 35 35 ASP ASP A . n A 1 53 GLY 53 36 36 GLY GLY A . n A 1 54 VAL 54 37 37 VAL VAL A . n A 1 55 HIS 55 38 38 HIS HIS A . n A 1 56 HIS 56 39 39 HIS HIS A . n A 1 57 GLY 57 40 40 GLY GLY A . n A 1 58 GLY 58 41 41 GLY GLY A . n A 1 59 SER 59 42 42 SER SER A . n A 1 60 GLY 60 43 43 GLY GLY A . n A 1 61 GLY 61 44 44 GLY GLY A . n A 1 62 ASN 62 45 45 ASN ASN A . n A 1 63 LEU 63 46 46 LEU LEU A . n A 1 64 SER 64 47 47 SER SER A . n A 1 65 PRO 65 48 48 PRO PRO A . n A 1 66 THR 66 49 49 THR THR A . n A 1 67 PHE 67 50 50 PHE PHE A . n A 1 68 THR 68 51 51 THR THR A . n A 1 69 PHE 69 52 52 PHE PHE A . n A 1 70 GLY 70 53 53 GLY GLY A . n A 1 71 SER 71 54 54 SER SER A . n A 1 72 GLY 72 55 55 GLY GLY A . n A 1 73 GLU 73 56 56 GLU GLU A . n A 1 74 TYR 74 57 57 TYR TYR A . n A 1 75 ILE 75 58 58 ILE ILE A . n A 1 76 SER 76 59 59 SER SER A . n A 1 77 ASN 77 60 60 ASN ASN A . n A 1 78 MSE 78 61 61 MSE SE A . n A 1 79 THR 79 62 62 THR THR A . n A 1 80 ILE 80 63 63 ILE ILE A . n A 1 81 ARG 81 64 64 ARG ARG A . n A 1 82 SER 82 65 65 SER SER A . n A 1 83 GLY 83 66 66 GLY GLY A . n A 1 84 ASP 84 67 67 ASP ASP A . n A 1 85 TYR 85 68 68 TYR TYR A . n A 1 86 ILE 86 69 69 ILE ILE A . n A 1 87 ASP 87 70 70 ASP ASP A . n A 1 88 ASN 88 71 71 ASN ASN A . n A 1 89 ILE 89 72 72 ILE ILE A . n A 1 90 SER 90 73 73 SER SER A . n A 1 91 PHE 91 74 74 PHE PHE A . n A 1 92 GLU 92 75 75 GLU GLU A . n A 1 93 THR 93 76 76 THR THR A . n A 1 94 ASN 94 77 77 ASN ASN A . n A 1 95 MSE 95 78 78 MSE SE A . n A 1 96 GLY 96 79 79 GLY GLY A . n A 1 97 ARG 97 80 80 ARG ARG A . n A 1 98 ARG 98 81 81 ARG ARG A . n A 1 99 PHE 99 82 82 PHE PHE A . n A 1 100 GLY 100 83 83 GLY GLY A . n A 1 101 PRO 101 84 84 PRO PRO A . n A 1 102 TYR 102 85 85 TYR TYR A . n A 1 103 GLY 103 86 86 GLY GLY A . n A 1 104 GLY 104 87 87 GLY GLY A . n A 1 105 SER 105 88 88 SER SER A . n A 1 106 GLY 106 89 89 GLY GLY A . n A 1 107 GLY 107 90 90 GLY GLY A . n A 1 108 SER 108 91 91 SER SER A . n A 1 109 ALA 109 92 92 ALA ALA A . n A 1 110 ASN 110 93 93 ASN ASN A . n A 1 111 THR 111 94 94 THR THR A . n A 1 112 LEU 112 95 95 LEU LEU A . n A 1 113 SER 113 96 96 SER SER A . n A 1 114 ASN 114 97 97 ASN ASN A . n A 1 115 VAL 115 98 98 VAL VAL A . n A 1 116 LYS 116 99 99 LYS LYS A . n A 1 117 VAL 117 100 100 VAL VAL A . n A 1 118 ILE 118 101 101 ILE ILE A . n A 1 119 GLN 119 102 102 GLN GLN A . n A 1 120 ILE 120 103 103 ILE ILE A . n A 1 121 ASN 121 104 104 ASN ASN A . n A 1 122 GLY 122 105 105 GLY GLY A . n A 1 123 SER 123 106 106 SER SER A . n A 1 124 ALA 124 107 107 ALA ALA A . n A 1 125 GLY 125 108 108 GLY GLY A . n A 1 126 ASP 126 109 109 ASP ASP A . n A 1 127 TYR 127 110 110 TYR TYR A . n A 1 128 LEU 128 111 111 LEU LEU A . n A 1 129 ASP 129 112 112 ASP ASP A . n A 1 130 SER 130 113 113 SER SER A . n A 1 131 LEU 131 114 114 LEU LEU A . n A 1 132 ASP 132 115 115 ASP ASP A . n A 1 133 ILE 133 116 116 ILE ILE A . n A 1 134 TYR 134 117 117 TYR TYR A . n A 1 135 TYR 135 118 118 TYR TYR A . n A 1 136 GLU 136 119 119 GLU GLU A . n A 1 137 GLN 137 120 120 GLN GLN A . n A 1 138 TYR 138 121 121 TYR TYR A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 78 A MSE 61 ? MET SELENOMETHIONINE 2 A MSE 95 A MSE 78 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5010 ? 1 MORE -55 ? 1 'SSA (A^2)' 10870 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-01 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 13.3051 _pdbx_refine_tls.origin_y 46.7925 _pdbx_refine_tls.origin_z 0.0226 _pdbx_refine_tls.T[1][1] -0.1090 _pdbx_refine_tls.T[2][2] -0.2576 _pdbx_refine_tls.T[3][3] -0.2026 _pdbx_refine_tls.T[1][2] 0.0701 _pdbx_refine_tls.T[1][3] -0.0435 _pdbx_refine_tls.T[2][3] -0.0878 _pdbx_refine_tls.L[1][1] 3.3698 _pdbx_refine_tls.L[2][2] 4.3787 _pdbx_refine_tls.L[3][3] 3.1965 _pdbx_refine_tls.L[1][2] 0.0328 _pdbx_refine_tls.L[1][3] 1.5029 _pdbx_refine_tls.L[2][3] -1.6616 _pdbx_refine_tls.S[1][1] -0.4398 _pdbx_refine_tls.S[1][2] -0.2130 _pdbx_refine_tls.S[1][3] 0.3706 _pdbx_refine_tls.S[2][1] 0.3009 _pdbx_refine_tls.S[2][2] 0.1062 _pdbx_refine_tls.S[2][3] -0.4699 _pdbx_refine_tls.S[3][1] -0.6270 _pdbx_refine_tls.S[3][2] -0.1856 _pdbx_refine_tls.S[3][3] 0.3336 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -4 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 13 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 121 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 138 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 DENZO 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SCALEPACK 'data scaling' . ? 5 HKL-3000 phasing . ? 6 SHELXE 'model building' . ? 7 SOLVE phasing . ? 8 RESOLVE phasing . ? 9 ARP/wARP 'model building' . ? 10 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 152 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 248 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 166 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 166 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.04 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 29 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 29 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 29 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.01 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation -15.29 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id VAL _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id -3 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 177.35 _pdbx_validate_torsion.psi 149.45 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU -4 ? CB ? A LEU 13 CB 2 1 Y 1 A LEU -4 ? CG ? A LEU 13 CG 3 1 Y 1 A LEU -4 ? CD1 ? A LEU 13 CD1 4 1 Y 1 A LEU -4 ? CD2 ? A LEU 13 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -16 ? A GLY 1 2 1 Y 1 A SER -15 ? A SER 2 3 1 Y 1 A SER -14 ? A SER 3 4 1 Y 1 A HIS -13 ? A HIS 4 5 1 Y 1 A HIS -12 ? A HIS 5 6 1 Y 1 A HIS -11 ? A HIS 6 7 1 Y 1 A HIS -10 ? A HIS 7 8 1 Y 1 A HIS -9 ? A HIS 8 9 1 Y 1 A HIS -8 ? A HIS 9 10 1 Y 1 A SER -7 ? A SER 10 11 1 Y 1 A SER -6 ? A SER 11 12 1 Y 1 A GLY -5 ? A GLY 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 137 127 SO4 SO4 A . C 3 HOH 1 138 1 HOH HOH A . C 3 HOH 2 139 2 HOH HOH A . C 3 HOH 3 140 3 HOH HOH A . C 3 HOH 4 141 4 HOH HOH A . C 3 HOH 5 142 5 HOH HOH A . C 3 HOH 6 143 6 HOH HOH A . C 3 HOH 7 144 7 HOH HOH A . C 3 HOH 8 145 8 HOH HOH A . C 3 HOH 9 146 9 HOH HOH A . C 3 HOH 10 147 10 HOH HOH A . C 3 HOH 11 148 11 HOH HOH A . C 3 HOH 12 149 12 HOH HOH A . C 3 HOH 13 150 13 HOH HOH A . C 3 HOH 14 151 14 HOH HOH A . C 3 HOH 15 152 15 HOH HOH A . C 3 HOH 16 153 16 HOH HOH A . C 3 HOH 17 154 17 HOH HOH A . C 3 HOH 18 155 18 HOH HOH A . C 3 HOH 19 156 19 HOH HOH A . C 3 HOH 20 157 20 HOH HOH A . C 3 HOH 21 158 21 HOH HOH A . C 3 HOH 22 159 22 HOH HOH A . C 3 HOH 23 160 23 HOH HOH A . C 3 HOH 24 161 24 HOH HOH A . C 3 HOH 25 162 25 HOH HOH A . C 3 HOH 26 163 26 HOH HOH A . C 3 HOH 27 164 27 HOH HOH A . C 3 HOH 28 165 28 HOH HOH A . C 3 HOH 29 166 29 HOH HOH A . C 3 HOH 30 167 30 HOH HOH A . C 3 HOH 31 168 31 HOH HOH A . C 3 HOH 32 169 32 HOH HOH A . C 3 HOH 33 170 33 HOH HOH A . C 3 HOH 34 171 34 HOH HOH A . C 3 HOH 35 172 35 HOH HOH A . C 3 HOH 36 173 36 HOH HOH A . C 3 HOH 37 174 37 HOH HOH A . C 3 HOH 38 175 38 HOH HOH A . C 3 HOH 39 176 39 HOH HOH A . C 3 HOH 40 177 40 HOH HOH A . C 3 HOH 41 178 41 HOH HOH A . C 3 HOH 42 179 42 HOH HOH A . C 3 HOH 43 180 43 HOH HOH A . C 3 HOH 44 181 44 HOH HOH A . C 3 HOH 45 182 45 HOH HOH A . C 3 HOH 46 183 46 HOH HOH A . C 3 HOH 47 184 47 HOH HOH A . C 3 HOH 48 185 48 HOH HOH A . C 3 HOH 49 186 49 HOH HOH A . C 3 HOH 50 187 50 HOH HOH A . C 3 HOH 51 188 51 HOH HOH A . C 3 HOH 52 189 52 HOH HOH A . C 3 HOH 53 190 53 HOH HOH A . C 3 HOH 54 191 54 HOH HOH A . C 3 HOH 55 192 55 HOH HOH A . C 3 HOH 56 193 56 HOH HOH A . C 3 HOH 57 194 57 HOH HOH A . C 3 HOH 58 195 58 HOH HOH A . C 3 HOH 59 196 59 HOH HOH A . C 3 HOH 60 197 60 HOH HOH A . C 3 HOH 61 198 61 HOH HOH A . C 3 HOH 62 199 62 HOH HOH A . C 3 HOH 63 200 63 HOH HOH A . C 3 HOH 64 201 64 HOH HOH A . C 3 HOH 65 202 65 HOH HOH A . C 3 HOH 66 203 66 HOH HOH A . C 3 HOH 67 204 67 HOH HOH A . C 3 HOH 68 205 68 HOH HOH A . C 3 HOH 69 206 69 HOH HOH A . C 3 HOH 70 207 70 HOH HOH A . C 3 HOH 71 208 71 HOH HOH A . C 3 HOH 72 209 72 HOH HOH A . C 3 HOH 73 210 73 HOH HOH A . C 3 HOH 74 211 74 HOH HOH A . C 3 HOH 75 212 75 HOH HOH A . C 3 HOH 76 213 76 HOH HOH A . C 3 HOH 77 214 77 HOH HOH A . C 3 HOH 78 215 78 HOH HOH A . C 3 HOH 79 216 79 HOH HOH A . C 3 HOH 80 217 80 HOH HOH A . C 3 HOH 81 218 81 HOH HOH A . C 3 HOH 82 219 82 HOH HOH A . C 3 HOH 83 220 83 HOH HOH A . C 3 HOH 84 221 84 HOH HOH A . C 3 HOH 85 222 85 HOH HOH A . C 3 HOH 86 223 86 HOH HOH A . C 3 HOH 87 224 87 HOH HOH A . C 3 HOH 88 225 88 HOH HOH A . C 3 HOH 89 226 89 HOH HOH A . C 3 HOH 90 227 90 HOH HOH A . C 3 HOH 91 228 91 HOH HOH A . C 3 HOH 92 229 92 HOH HOH A . C 3 HOH 93 230 93 HOH HOH A . C 3 HOH 94 231 94 HOH HOH A . C 3 HOH 95 232 95 HOH HOH A . C 3 HOH 96 233 96 HOH HOH A . C 3 HOH 97 234 97 HOH HOH A . C 3 HOH 98 235 98 HOH HOH A . C 3 HOH 99 236 99 HOH HOH A . C 3 HOH 100 237 100 HOH HOH A . C 3 HOH 101 238 101 HOH HOH A . C 3 HOH 102 239 102 HOH HOH A . C 3 HOH 103 240 103 HOH HOH A . C 3 HOH 104 241 104 HOH HOH A . C 3 HOH 105 242 105 HOH HOH A . C 3 HOH 106 243 106 HOH HOH A . C 3 HOH 107 244 107 HOH HOH A . C 3 HOH 108 245 108 HOH HOH A . C 3 HOH 109 246 109 HOH HOH A . C 3 HOH 110 247 110 HOH HOH A . C 3 HOH 111 248 111 HOH HOH A . C 3 HOH 112 249 112 HOH HOH A . C 3 HOH 113 250 113 HOH HOH A . C 3 HOH 114 251 114 HOH HOH A . C 3 HOH 115 252 116 HOH HOH A . C 3 HOH 116 253 119 HOH HOH A . C 3 HOH 117 254 126 HOH HOH A . C 3 HOH 118 255 127 HOH HOH A . C 3 HOH 119 256 128 HOH HOH A . C 3 HOH 120 257 129 HOH HOH A . C 3 HOH 121 258 130 HOH HOH A . C 3 HOH 122 259 131 HOH HOH A . C 3 HOH 123 260 132 HOH HOH A . C 3 HOH 124 261 133 HOH HOH A . #