HEADER HYDROLASE 02-MAY-06 2GUY TITLE ORTHORHOMBIC CRYSTAL STRUCTURE (SPACE GROUP P21212) OF ASPERGILLUS TITLE 2 NIGER ALPHA-AMYLASE AT 1.6 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAKA-AMYLASE A, TAA, 1,4- ALPHA-D-GLUCAN GLUCANOHYDROLASE; COMPND 5 EC: 3.2.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; SOURCE 3 ORGANISM_TAXID: 5062 KEYWDS (BETA-ALPHA) 8 BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VUJICIC ZAGAR REVDAT 7 06-NOV-24 2GUY 1 REMARK REVDAT 6 30-AUG-23 2GUY 1 HETSYN REVDAT 5 29-JUL-20 2GUY 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 18-OCT-17 2GUY 1 REMARK REVDAT 3 13-JUL-11 2GUY 1 VERSN REVDAT 2 24-FEB-09 2GUY 1 VERSN REVDAT 1 15-AUG-06 2GUY 0 JRNL AUTH A.VUJICIC-ZAGAR,B.W.DIJKSTRA JRNL TITL MONOCLINIC CRYSTAL FORM OF ASPERGILLUS NIGER ALPHA-AMYLASE JRNL TITL 2 IN COMPLEX WITH MALTOSE AT 1.8 ANGSTROMS RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 62 716 2006 JRNL REFN ESSN 1744-3091 JRNL PMID 16880540 JRNL DOI 10.1107/S1744309106024729 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 60711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3245 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 564 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.205 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3828 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5234 ; 1.483 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;35.711 ;25.115 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;13.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2950 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1903 ; 0.217 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2703 ; 0.324 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 815 ; 0.172 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.030 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.235 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 98 ; 0.279 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2394 ; 1.158 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3805 ; 1.726 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1659 ; 1.482 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1429 ; 2.129 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5739 6.5953 18.7641 REMARK 3 T TENSOR REMARK 3 T11: -0.0168 T22: -0.0169 REMARK 3 T33: -0.0373 T12: 0.0354 REMARK 3 T13: 0.0160 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.0247 L22: 0.8174 REMARK 3 L33: 0.6026 L12: -0.3997 REMARK 3 L13: 0.0484 L23: -0.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.1099 S12: 0.1992 S13: 0.0083 REMARK 3 S21: -0.0613 S22: -0.1166 S23: -0.0204 REMARK 3 S31: -0.0035 S32: -0.0366 S33: 0.0068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91835 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65130 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7TAA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.2M NA-ACETATE, 0.1M NA REMARK 280 -CACODYLATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.39950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.61400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.39950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.61400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1252 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 477 REMARK 465 SER A 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 412 CE1 TYR A 419 2.02 REMARK 500 O HOH A 1147 O HOH A 1521 2.09 REMARK 500 O HOH A 1177 O HOH A 1443 2.12 REMARK 500 O HOH A 1311 O HOH A 1375 2.12 REMARK 500 OE1 GLU A 109 O HOH A 1452 2.13 REMARK 500 O HOH A 1112 O HOH A 1446 2.17 REMARK 500 OG SER A 422 ND2 ASN A 450 2.17 REMARK 500 O HOH A 1134 O HOH A 1566 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1227 O HOH A 1302 2555 2.03 REMARK 500 O HOH A 1428 O HOH A 1441 3556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 45.81 -79.57 REMARK 500 TRP A 83 61.50 -119.95 REMARK 500 GLN A 85 -34.80 -130.64 REMARK 500 ALA A 329 121.60 -36.03 REMARK 500 ASP A 340 126.94 -33.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 121 OD1 REMARK 620 2 GLU A 162 O 152.1 REMARK 620 3 ASP A 175 OD2 124.0 78.1 REMARK 620 4 ASP A 175 OD1 75.8 115.7 51.7 REMARK 620 5 HIS A 210 O 73.8 81.7 159.0 136.1 REMARK 620 6 HOH A1026 O 116.4 72.5 96.4 139.5 83.0 REMARK 620 7 HOH A1050 O 88.7 73.9 88.7 68.3 80.1 144.2 REMARK 620 8 HOH A1194 O 73.4 132.4 77.4 77.8 121.4 70.4 144.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TAA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAMILY 13 ALPHA AMYLASE FROM ASPERGILLUS REMARK 900 ORYZAE IN COMPLEX WITH ACARBOSE REMARK 900 RELATED ID: 6TAA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 2TAA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 CURRENTLY THERE IS NO AMINOACID SEQUENCE DATABASE REFERENCE REMARK 999 AVAILABLE FOR THE PROTEIN DBREF 2GUY A 1 478 UNP P0C1B3 AMYA1_ASPOR 22 499 SEQRES 1 A 478 ALA THR PRO ALA ASP TRP ARG SER GLN SER ILE TYR PHE SEQRES 2 A 478 LEU LEU THR ASP ARG PHE ALA ARG THR ASP GLY SER THR SEQRES 3 A 478 THR ALA THR CYS ASN THR ALA ASP GLN LYS TYR CYS GLY SEQRES 4 A 478 GLY THR TRP GLN GLY ILE ILE ASP LYS LEU ASP TYR ILE SEQRES 5 A 478 GLN GLY MET GLY PHE THR ALA ILE TRP ILE THR PRO VAL SEQRES 6 A 478 THR ALA GLN LEU PRO GLN THR THR ALA TYR GLY ASP ALA SEQRES 7 A 478 TYR HIS GLY TYR TRP GLN GLN ASP ILE TYR SER LEU ASN SEQRES 8 A 478 GLU ASN TYR GLY THR ALA ASP ASP LEU LYS ALA LEU SER SEQRES 9 A 478 SER ALA LEU HIS GLU ARG GLY MET TYR LEU MET VAL ASP SEQRES 10 A 478 VAL VAL ALA ASN HIS MET GLY TYR ASP GLY ALA GLY SER SEQRES 11 A 478 SER VAL ASP TYR SER VAL PHE LYS PRO PHE SER SER GLN SEQRES 12 A 478 ASP TYR PHE HIS PRO PHE CYS PHE ILE GLN ASN TYR GLU SEQRES 13 A 478 ASP GLN THR GLN VAL GLU ASP CYS TRP LEU GLY ASP ASN SEQRES 14 A 478 THR VAL SER LEU PRO ASP LEU ASP THR THR LYS ASP VAL SEQRES 15 A 478 VAL LYS ASN GLU TRP TYR ASP TRP VAL GLY SER LEU VAL SEQRES 16 A 478 SER ASN TYR SER ILE ASP GLY LEU ARG ILE ASP THR VAL SEQRES 17 A 478 LYS HIS VAL GLN LYS ASP PHE TRP PRO GLY TYR ASN LYS SEQRES 18 A 478 ALA ALA GLY VAL TYR CYS ILE GLY GLU VAL LEU ASP GLY SEQRES 19 A 478 ASP PRO ALA TYR THR CYS PRO TYR GLN ASN VAL MET ASP SEQRES 20 A 478 GLY VAL LEU ASN TYR PRO ILE TYR TYR PRO LEU LEU ASN SEQRES 21 A 478 ALA PHE LYS SER THR SER GLY SER MET ASP ASP LEU TYR SEQRES 22 A 478 ASN MET ILE ASN THR VAL LYS SER ASP CYS PRO ASP SER SEQRES 23 A 478 THR LEU LEU GLY THR PHE VAL GLU ASN HIS ASP ASN PRO SEQRES 24 A 478 ARG PHE ALA SER TYR THR ASN ASP ILE ALA LEU ALA LYS SEQRES 25 A 478 ASN VAL ALA ALA PHE ILE ILE LEU ASN ASP GLY ILE PRO SEQRES 26 A 478 ILE ILE TYR ALA GLY GLN GLU GLN HIS TYR ALA GLY GLY SEQRES 27 A 478 ASN ASP PRO ALA ASN ARG GLU ALA THR TRP LEU SER GLY SEQRES 28 A 478 TYR PRO THR ASP SER GLU LEU TYR LYS LEU ILE ALA SER SEQRES 29 A 478 ALA ASN ALA ILE ARG ASN TYR ALA ILE SER LYS ASP THR SEQRES 30 A 478 GLY PHE VAL THR TYR LYS ASN TRP PRO ILE TYR LYS ASP SEQRES 31 A 478 ASP THR THR ILE ALA MET ARG LYS GLY THR ASP GLY SER SEQRES 32 A 478 GLN ILE VAL THR ILE LEU SER ASN LYS GLY ALA SER GLY SEQRES 33 A 478 ASP SER TYR THR LEU SER LEU SER GLY ALA GLY TYR THR SEQRES 34 A 478 ALA GLY GLN GLN LEU THR GLU VAL ILE GLY CYS THR THR SEQRES 35 A 478 VAL THR VAL GLY SER ASP GLY ASN VAL PRO VAL PRO MET SEQRES 36 A 478 ALA GLY GLY LEU PRO ARG VAL LEU TYR PRO THR GLU LYS SEQRES 37 A 478 LEU ALA GLY SER LYS ILE CYS SER SER SER MODRES 2GUY ASN A 197 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET CA A 601 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 HOH *564(H2 O) HELIX 1 1 THR A 2 ARG A 7 1 6 HELIX 2 2 LEU A 15 ALA A 20 1 6 HELIX 3 3 ASN A 31 GLN A 35 5 5 HELIX 4 4 THR A 41 LYS A 48 1 8 HELIX 5 5 LYS A 48 GLY A 54 1 7 HELIX 6 6 THR A 96 ARG A 110 1 15 HELIX 7 7 ALA A 128 VAL A 132 5 5 HELIX 8 8 ASP A 133 PHE A 137 5 5 HELIX 9 9 SER A 142 PHE A 146 5 5 HELIX 10 10 ASP A 157 CYS A 164 1 8 HELIX 11 11 LYS A 180 SER A 199 1 20 HELIX 12 12 THR A 207 VAL A 211 5 5 HELIX 13 13 GLN A 212 ASP A 214 5 3 HELIX 14 14 PHE A 215 GLY A 224 1 10 HELIX 15 15 ASP A 235 CYS A 240 1 6 HELIX 16 16 PRO A 241 VAL A 245 5 5 HELIX 17 17 ASN A 251 LYS A 263 1 13 HELIX 18 18 SER A 268 CYS A 283 1 16 HELIX 19 19 ASP A 285 LEU A 288 5 4 HELIX 20 20 ARG A 300 TYR A 304 5 5 HELIX 21 21 ASP A 307 ASN A 321 1 15 HELIX 22 22 GLY A 330 HIS A 334 5 5 HELIX 23 23 ALA A 346 GLY A 351 5 6 HELIX 24 24 SER A 356 ASP A 376 1 21 HELIX 25 25 GLU A 467 ALA A 470 5 4 SHEET 1 A 8 GLY A 248 VAL A 249 0 SHEET 2 A 8 TYR A 226 GLY A 229 1 N GLY A 229 O GLY A 248 SHEET 3 A 8 GLY A 202 ILE A 205 1 N ILE A 205 O ILE A 228 SHEET 4 A 8 TYR A 113 VAL A 118 1 N VAL A 118 O ARG A 204 SHEET 5 A 8 ALA A 59 ILE A 62 1 N ILE A 60 O MET A 115 SHEET 6 A 8 ILE A 11 LEU A 14 1 N LEU A 14 O TRP A 61 SHEET 7 A 8 ILE A 324 TYR A 328 1 O PRO A 325 N ILE A 11 SHEET 8 A 8 GLY A 290 THR A 291 1 N THR A 291 O ILE A 326 SHEET 1 B 2 THR A 66 GLN A 68 0 SHEET 2 B 2 GLN A 84 LEU A 90 -1 O GLN A 85 N ALA A 67 SHEET 1 C 3 TYR A 125 ASP A 126 0 SHEET 2 C 3 VAL A 171 LEU A 173 -1 O SER A 172 N TYR A 125 SHEET 3 C 3 LEU A 166 GLY A 167 -1 N LEU A 166 O LEU A 173 SHEET 1 D 6 TRP A 385 ASP A 390 0 SHEET 2 D 6 THR A 393 LYS A 398 -1 O ALA A 395 N TYR A 388 SHEET 3 D 6 ILE A 405 SER A 410 -1 O LEU A 409 N ILE A 394 SHEET 4 D 6 ARG A 461 PRO A 465 -1 O LEU A 463 N VAL A 406 SHEET 5 D 6 GLN A 433 GLU A 436 -1 N THR A 435 O TYR A 464 SHEET 6 D 6 THR A 441 THR A 444 -1 O VAL A 443 N LEU A 434 SHEET 1 E 2 TYR A 419 LEU A 423 0 SHEET 2 E 2 VAL A 451 MET A 455 -1 O MET A 455 N TYR A 419 SSBOND 1 CYS A 30 CYS A 38 1555 1555 2.13 SSBOND 2 CYS A 150 CYS A 164 1555 1555 2.49 SSBOND 3 CYS A 240 CYS A 283 1555 1555 2.04 SSBOND 4 CYS A 440 CYS A 475 1555 1555 2.05 LINK ND2 ASN A 197 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.46 LINK OD1 ASN A 121 CA CA A 601 1555 1555 2.38 LINK O GLU A 162 CA CA A 601 1555 1555 2.44 LINK OD2 ASP A 175 CA CA A 601 1555 1555 2.50 LINK OD1 ASP A 175 CA CA A 601 1555 1555 2.61 LINK O HIS A 210 CA CA A 601 1555 1555 2.41 LINK CA CA A 601 O HOH A1026 1555 1555 2.48 LINK CA CA A 601 O HOH A1050 1555 1555 2.51 LINK CA CA A 601 O HOH A1194 1555 1555 2.43 CISPEP 1 LYS A 138 PRO A 139 0 4.88 CISPEP 2 ASP A 340 PRO A 341 0 5.20 CRYST1 102.799 63.228 74.456 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013431 0.00000