HEADER HYDROLASE 02-MAY-06 2GV1 TITLE NMR SOLUTION STRUCTURE OF THE ACYLPHOSPHATASE FROM ESCHAERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ACYLPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYLPHOSPHATE PHOSPHOHYDROLASE; COMPND 5 EC: 3.6.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YCCX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLOBULAR ALPHA-HELIX/BETA-SHEET PROTEIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.PAGANO,A.CORAZZA,P.VIGLINO,G.ESPOSITO REVDAT 5 16-OCT-24 2GV1 1 REMARK REVDAT 4 09-MAR-22 2GV1 1 REMARK REVDAT 3 24-FEB-09 2GV1 1 VERSN REVDAT 2 21-NOV-06 2GV1 1 JRNL REVDAT 1 31-OCT-06 2GV1 0 JRNL AUTH K.PAGANO,M.RAMAZZOTTI,P.VIGLINO,G.ESPOSITO,D.DEGL'INNOCENTI, JRNL AUTH 2 N.TADDEI,A.CORAZZA JRNL TITL NMR SOLUTION STRUCTURE OF THE ACYLPHOSPHATASE FROM JRNL TITL 2 ESCHERICHIA COLI. JRNL REF J.BIOMOL.NMR V. 36 199 2006 JRNL REFN ISSN 0925-2738 JRNL PMID 17021943 JRNL DOI 10.1007/S10858-006-9073-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.CORAZZA,C.ROSANO,K.PAGANO,V.ALVERDI,G.ESPOSITO,C.CAPANNI, REMARK 1 AUTH 2 F.BEMPORAD,G.PLAKOUTSI,M.STEFANI,F.CHITI,S.ZUCCOTTI, REMARK 1 AUTH 3 M.BOLOGNESI,P.VIGLINO REMARK 1 TITL STRUCTURE, CONFORMATIONAL STABILITY, AND ENZYMATIC REMARK 1 TITL 2 PROPERTIES OF ACYLPHOSPHATASE FROM THE HYPERTHERMOPHILE REMARK 1 TITL 3 SULFOLOBUS SOLFATARICUS REMARK 1 REF PROTEINS V. 62 64 2006 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 16287076 REMARK 1 DOI 10.1002/PROT.20703 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.M.THUNNISSEN,N.TADDEI,G.LIGURI,G.RAMPONI,P.NORDLUND REMARK 1 TITL CRYSTAL STRUCTURE OF COMMON TYPE ACYLPHOSPHATASE FROM BOVINE REMARK 1 TITL 2 TESTIS REMARK 1 REF STRUCTURE V. 5 69 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 9016712 REMARK 1 DOI 10.1016/S0969-2126(97)00167-6 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.PASTORE,V.SAUDEK,G.RAMPONI,R.J.WILLIAMS REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF ACYLPHOSPHATASE. REFINEMENT REMARK 1 TITL 2 AND STRUCTURE ANALYSIS. REMARK 1 REF J.MOL.BIOL. V. 224 427 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 1313885 REMARK 1 DOI 10.1016/0022-2836(92)91005-A REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.0, DISCOVER 2.9.7 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), MSI, SAN DIEGO CA REMARK 3 (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1029 RESTRAINTS, 970 ARE NOE-DERIVED DISTANCE RESTRAINTS AND 59 REMARK 3 DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 2GV1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037583. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.95 REMARK 210 IONIC STRENGTH : 65 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 30 MM REMARK 210 DEUTERATED SODIUM ACETATE, 50 MM REMARK 210 NACL, 90% H2O, 10% D2O; U-15N, REMARK 210 50 MM SODIUM PHOSPHATE, 30 MM REMARK 210 DEUTERATED SODIUM ACETATE, 50 MM REMARK 210 NACL, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; 2D REMARK 210 15N HSQC; 3D 15N HSQC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.0, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 380 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY AND STANDARD 2D HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 14 CYS A 5 CA - CB - SG ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -51.50 -145.15 REMARK 500 1 TYR A 21 -68.93 -103.56 REMARK 500 1 THR A 33 -161.39 -117.31 REMARK 500 1 THR A 87 -77.32 -77.32 REMARK 500 2 SER A 2 -49.68 -141.26 REMARK 500 2 TYR A 21 -72.21 -98.31 REMARK 500 2 THR A 33 -158.17 -111.47 REMARK 500 2 HIS A 81 77.89 -113.85 REMARK 500 2 THR A 87 -76.95 -83.20 REMARK 500 3 SER A 2 -53.60 -173.12 REMARK 500 3 TYR A 21 -74.61 -87.37 REMARK 500 3 SER A 69 -74.32 -84.69 REMARK 500 3 HIS A 81 72.37 -110.88 REMARK 500 4 ARG A 20 41.54 -68.69 REMARK 500 4 THR A 33 -159.39 -112.27 REMARK 500 5 TYR A 21 -75.05 -94.40 REMARK 500 5 THR A 33 -157.61 -111.87 REMARK 500 5 ARG A 68 -57.11 -136.76 REMARK 500 5 SER A 69 -45.79 -166.79 REMARK 500 5 ARG A 71 78.37 -113.08 REMARK 500 5 HIS A 81 74.22 -110.55 REMARK 500 5 THR A 87 -75.95 -75.54 REMARK 500 6 SER A 2 -53.77 -168.91 REMARK 500 6 TYR A 21 -73.51 -114.27 REMARK 500 6 ALA A 70 159.46 69.79 REMARK 500 6 HIS A 81 77.67 -109.34 REMARK 500 6 THR A 87 -73.43 -74.74 REMARK 500 7 SER A 2 -41.07 -138.17 REMARK 500 7 TYR A 21 -72.42 -110.99 REMARK 500 7 THR A 33 -160.89 -115.61 REMARK 500 7 ALA A 70 148.50 77.67 REMARK 500 7 VAL A 72 94.32 -67.54 REMARK 500 7 HIS A 81 74.21 -109.89 REMARK 500 7 THR A 87 -77.82 -79.59 REMARK 500 8 SER A 2 -49.89 -149.25 REMARK 500 8 TYR A 21 -71.02 -97.42 REMARK 500 8 THR A 33 -162.43 -120.29 REMARK 500 8 THR A 87 -79.26 -79.80 REMARK 500 9 SER A 2 -47.03 -136.42 REMARK 500 9 VAL A 14 -45.84 -131.52 REMARK 500 9 TYR A 21 -72.84 -111.76 REMARK 500 9 ARG A 71 78.45 -115.29 REMARK 500 9 HIS A 81 70.08 -117.43 REMARK 500 9 THR A 87 -75.81 -73.69 REMARK 500 10 SER A 2 -52.54 -140.89 REMARK 500 10 THR A 33 -162.76 -118.73 REMARK 500 10 ALA A 70 -168.82 63.82 REMARK 500 10 THR A 87 -79.93 -79.45 REMARK 500 11 SER A 2 -59.20 175.45 REMARK 500 11 VAL A 4 79.46 -112.78 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 11 0.06 SIDE CHAIN REMARK 500 3 PHE A 19 0.09 SIDE CHAIN REMARK 500 4 TYR A 11 0.09 SIDE CHAIN REMARK 500 4 TYR A 35 0.06 SIDE CHAIN REMARK 500 11 PHE A 19 0.12 SIDE CHAIN REMARK 500 20 TYR A 11 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y9O RELATED DB: PDB REMARK 900 ACYLPHOSPHATASE FROM SULFOLOBUS SOLFATARICUS REMARK 900 RELATED ID: 2ACY RELATED DB: PDB REMARK 900 COMMON TYPE ACYLPHOSPHATASE FROM BOVINE TESTIS REMARK 900 RELATED ID: 1APS RELATED DB: PDB REMARK 900 MUSCLE TYPE ACYLPHOSPHATASE FROM HORSE DBREF 2GV1 A 1 92 UNP P0AB65 ACYP_ECOLI 1 92 SEQRES 1 A 92 MET SER LYS VAL CYS ILE ILE ALA TRP VAL TYR GLY ARG SEQRES 2 A 92 VAL GLN GLY VAL GLY PHE ARG TYR THR THR GLN TYR GLU SEQRES 3 A 92 ALA LYS ARG LEU GLY LEU THR GLY TYR ALA LYS ASN LEU SEQRES 4 A 92 ASP ASP GLY SER VAL GLU VAL VAL ALA CYS GLY GLU GLU SEQRES 5 A 92 GLY GLN VAL GLU LYS LEU MET GLN TRP LEU LYS SER GLY SEQRES 6 A 92 GLY PRO ARG SER ALA ARG VAL GLU ARG VAL LEU SER GLU SEQRES 7 A 92 PRO HIS HIS PRO SER GLY GLU LEU THR ASP PHE ARG ILE SEQRES 8 A 92 ARG HELIX 1 1 THR A 22 GLY A 31 1 10 HELIX 2 2 GLU A 51 GLY A 65 1 15 SHEET 1 A 5 ARG A 71 HIS A 80 0 SHEET 2 A 5 CYS A 5 ARG A 13 -1 N TYR A 11 O ARG A 74 SHEET 3 A 5 VAL A 44 ALA A 48 -1 O VAL A 46 N ALA A 8 SHEET 4 A 5 TYR A 35 ASN A 38 -1 N LYS A 37 O GLU A 45 SHEET 5 A 5 ARG A 90 ILE A 91 1 O ARG A 90 N ALA A 36 SSBOND 1 CYS A 5 CYS A 49 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1